mRNA_E-siliculosus-1a_F_contig14541.2662.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Match: D1J7A8_ECTSI (Photosystem I reaction center subunit III n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7A8_ECTSI) HSP 1 Score: 423 bits (1088), Expect = 1.160e-149 Identity = 215/217 (99.08%), Postives = 215/217 (99.08%), Query Frame = 1
Query: 1 MYYTNMYTYFYILCSVENLFFIKIYSFSRFSSIMFKIKKSLLIFFLTLSLPLASFADVAGLTKCSESVPFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 651
MYYT MYTYFYILCSVENLFFIKIYSFSRFSSIMFKIKKSLLIFFLTLSLPLASFADVAGLTKCSESV FNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR
Sbjct: 1 MYYTTMYTYFYILCSVENLFFIKIYSFSRFSSIMFKIKKSLLIFFLTLSLPLASFADVAGLTKCSESVAFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 217
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Match: A0A1I9LVT8_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVT8_9PHAE) HSP 1 Score: 379 bits (972), Expect = 5.790e-132 Identity = 190/218 (87.16%), Postives = 204/218 (93.58%), Query Frame = 1
Query: 1 MYYTNMYTYFYILCSVENLFFIKIYSFSRFSSIMFKIKKSLLIFFLTLSLPLASFADVAGLTKCSESVPFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTT-NPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 651
MYYTNMYTYFYILC+VENLFFIKIY+FS F +IMFK KKSLLIFFLTLSLP SFADVAGLTKCS+S PFNKRLE SVKKLE R++KYEPNSPPAL L++QI TK+RF+RYSNSELLCGK+GLPHLITDGRWDHAVEFMIPG+MFLYI+GWIGWVGRSYLNTVS T+ NPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFL PDSEITVSPR
Sbjct: 1 MYYTNMYTYFYILCNVENLFFIKIYNFSMFLAIMFKFKKSLLIFFLTLSLPFISFADVAGLTKCSDSSPFNKRLESSVKKLETRIKKYEPNSPPALVLQEQIRTTKKRFDRYSNSELLCGKDGLPHLITDGRWDHAVEFMIPGIMFLYISGWIGWVGRSYLNTVSKTSLNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLTPDSEITVSPR 218
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Match: A0A0S0GAQ3_COSCS (Photosystem I reaction center subunit III n=29 Tax=Laminariales TaxID=2886 RepID=A0A0S0GAQ3_COSCS) HSP 1 Score: 339 bits (870), Expect = 1.150e-116 Identity = 167/202 (82.67%), Postives = 182/202 (90.10%), Query Frame = 1
Query: 46 VENLFFIKIYSFSRFSSIMFKIKKSLLIFFLTLSLPLASFADVAGLTKCSESVPFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 651
++NLFFIK +SFS +MF KKS+LIFFL LS+PLA+FADVAGLTKCSES PFNKR + SVKKLE RV+KYEP SPPALALEQQI RTKQRF RYSNSELLCGKEGLPHLITDGRWDHAVEF+IPGMMFLYI+GWIGW GRSYLNTV T+NPTEKEII+DVPLALKIMSSGFIWP+SAWQEFT+G FL PDSEITVSPR
Sbjct: 1 MKNLFFIKTHSFSLLFRLMFNFKKSVLIFFLALSIPLAAFADVAGLTKCSESAPFNKRFDASVKKLEVRVKKYEPGSPPALALEQQITRTKQRFTRYSNSELLCGKEGLPHLITDGRWDHAVEFVIPGMMFLYISGWIGWAGRSYLNTVGATSNPTEKEIILDVPLALKIMSSGFIWPVSAWQEFTTGNFLVPDSEITVSPR 202
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Match: A0A344PFC1_9PHAE (Photosystem I reaction center subunit III n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFC1_9PHAE) HSP 1 Score: 335 bits (858), Expect = 4.240e-115 Identity = 165/184 (89.67%), Postives = 176/184 (95.65%), Query Frame = 1
Query: 100 MFKIKKSLLIFFLTLSLPLASFADVAGLTKCSESVPFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 651
MFK KKSLLIFFL LSLPLASFADVAGLTKCS+S F KRL+ SVKKLEGR++KYEPNSPPALALEQQINRTKQRF+RYSNS+LLCGK+GLPHLITDGRW+HAVEF+IPGMMFLYI+GWIGWVGRSYLNTVS +NPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR
Sbjct: 2 MFKFKKSLLIFFLALSLPLASFADVAGLTKCSDSSAFTKRLDSSVKKLEGRIKKYEPNSPPALALEQQINRTKQRFDRYSNSQLLCGKDGLPHLITDGRWNHAVEFVIPGMMFLYISGWIGWVGRSYLNTVSVFSNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 185
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Match: A0A6B7ILH5_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7ILH5_9PHAE) HSP 1 Score: 332 bits (851), Expect = 4.780e-114 Identity = 161/184 (87.50%), Postives = 172/184 (93.48%), Query Frame = 1
Query: 100 MFKIKKSLLIFFLTLSLPLASFADVAGLTKCSESVPFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 651
MFK KKSLLIF L SLPL +FADVAGLTKCSES FNKRL+ SVKKLEGR+QKYE SPPALALEQQINRTKQRF+RYSNSELLCGK+GLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGR+YLNT+S ++NPTEKEIIIDVPLALKIMSSGFIWP+SAWQEFTSG FLAPDS+ITVSPR
Sbjct: 1 MFKFKKSLLIFVLVFSLPLVTFADVAGLTKCSESTTFNKRLDASVKKLEGRIQKYEAGSPPALALEQQINRTKQRFDRYSNSELLCGKDGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRNYLNTISGSSNPTEKEIIIDVPLALKIMSSGFIWPVSAWQEFTSGNFLAPDSDITVSPR 184
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Match: A0A8F0JXW8_9PHAE (Photosystem I reaction center subunit III n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JXW8_9PHAE) HSP 1 Score: 330 bits (847), Expect = 1.940e-113 Identity = 160/184 (86.96%), Postives = 171/184 (92.93%), Query Frame = 1
Query: 100 MFKIKKSLLIFFLTLSLPLASFADVAGLTKCSESVPFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 651
MF +KKS LIFFL LS+PL +FADVAGLTKCSES PFNKRLE SVKKLE RVQKYE SPPALALEQQINRTKQRF+RYS SELLCGKEGLPHLITDGRWDH+VEF+IPG+MFLYI+GWIGWVGRSYLNTVS T+NPTEKEIIIDVPLALKIMSSGF+WP+SAWQEFT G FLAPDSEITVSPR
Sbjct: 1 MFNLKKSFLIFFLALSIPLTAFADVAGLTKCSESAPFNKRLEASVKKLESRVQKYEVGSPPALALEQQINRTKQRFDRYSKSELLCGKEGLPHLITDGRWDHSVEFVIPGLMFLYISGWIGWVGRSYLNTVSKTSNPTEKEIIIDVPLALKIMSSGFVWPVSAWQEFTGGNFLAPDSEITVSPR 184
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Match: A0A8F0FAP0_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP0_9PHAE) HSP 1 Score: 326 bits (836), Expect = 9.220e-112 Identity = 162/181 (89.50%), Postives = 170/181 (93.92%), Query Frame = 1
Query: 109 IKKSLLIFFLTLSLPLASFADVAGLTKCSESVPFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 651
+KKSLLIFF+TLSLPL +FADVAGLTKCSES FNKRLE SVKKLE RVQKYE SPPALALEQQI+RTKQRF+RYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYI+GWIGWVGR YLNTVSNT+NPTEKEIIIDVPLALKIMS+GFIWP SAWQEFTSG FLA DSEITVSPR
Sbjct: 4 LKKSLLIFFVTLSLPLIAFADVAGLTKCSESAAFNKRLESSVKKLELRVQKYEAGSPPALALEQQISRTKQRFDRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYISGWIGWVGRKYLNTVSNTSNPTEKEIIIDVPLALKIMSTGFIWPASAWQEFTSGNFLASDSEITVSPR 184
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Match: A0A141BSG7_9PHAE (Photosystem I reaction center subunit III n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSG7_9PHAE) HSP 1 Score: 315 bits (806), Expect = 3.670e-107 Identity = 152/181 (83.98%), Postives = 166/181 (91.71%), Query Frame = 1
Query: 109 IKKSLLIFFLTLSLPLASFADVAGLTKCSESVPFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 651
+KKSLLI FLTLSLPL FADVAGLTKCSES FN RLE SV+KLE R++KYE SPPALALEQQINRTKQRFNRYSNSELLCGK+GLPHLITDGRWDHAVEF+IPG+MF+YI+GWIGWVGRSY+N +S T+NPTEKEIIIDVPLA+KIMSSGF+WPISAWQEF SG FLA DSEITVSPR
Sbjct: 6 LKKSLLIVFLTLSLPLTVFADVAGLTKCSESSAFNNRLESSVRKLESRIKKYETGSPPALALEQQINRTKQRFNRYSNSELLCGKDGLPHLITDGRWDHAVEFIIPGIMFIYISGWIGWVGRSYINNISTTSNPTEKEIIIDVPLAIKIMSSGFVWPISAWQEFASGSFLASDSEITVSPR 186
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Match: A0A2R4QPX5_9PHAE (Photosystem I reaction center subunit III n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPX5_9PHAE) HSP 1 Score: 308 bits (788), Expect = 2.020e-104 Identity = 149/181 (82.32%), Postives = 163/181 (90.06%), Query Frame = 1
Query: 109 IKKSLLIFFLTLSLPLASFADVAGLTKCSESVPFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 651
+KK LL+ +T SLP FAD+AGLTKCS+S FN RL+ SVKKLE RV+KYE SPPALALEQQI+RTKQRFNRYSNSELLCGK+GLPHLITDGRWDHAVEF+IPG+MF+YI+GWIGWVGRSY+N VSNT NPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSG FLA DSEITVSPR
Sbjct: 6 LKKLLLVILITFSLPSTIFADIAGLTKCSDSSTFNNRLDSSVKKLESRVKKYEAGSPPALALEQQISRTKQRFNRYSNSELLCGKDGLPHLITDGRWDHAVEFVIPGLMFIYISGWIGWVGRSYINNVSNTKNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGSFLASDSEITVSPR 186
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Match: A0A8F0F743_9PHAE (Photosystem I reaction center subunit III n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F743_9PHAE) HSP 1 Score: 307 bits (787), Expect = 3.190e-104 Identity = 146/185 (78.92%), Postives = 165/185 (89.19%), Query Frame = 1
Query: 97 IMFKIKKSLLIFFLTLSLPLASFADVAGLTKCSESVPFNKRLELSVKKLEGRVQKYEPNSPPALALEQQINRTKQRFNRYSNSELLCGKEGLPHLITDGRWDHAVEFMIPGMMFLYITGWIGWVGRSYLNTVSNTTNPTEKEIIIDVPLALKIMSSGFIWPISAWQEFTSGKFLAPDSEITVSPR 651
+MF ++KSLL FFL +LPL ++ADVAGLTKCS+S FNKR + SVKKLE R+QKYEP SPP LALEQQI RTK RFNRYSNSELLCGK+GLPHLITDGRWDHAVEF+IPG+MF+YI+GWIGWVGR Y+NT+ + NPTEKEIIIDVPLA+KIMSSGFIWPISAWQEFT+G FLA DSEITVSPR
Sbjct: 5 LMFTLRKSLLFFFLAFTLPLNAYADVAGLTKCSDSAAFNKRFDGSVKKLETRIQKYEPGSPPTLALEQQIERTKNRFNRYSNSELLCGKDGLPHLITDGRWDHAVEFIIPGIMFIYISGWIGWVGRKYINTIGTSKNPTEKEIIIDVPLAVKIMSSGFIWPISAWQEFTTGNFLASDSEITVSPR 189 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14541.2662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14541.2662.1 >prot_E-siliculosus-1a_F_contig14541.2662.1 ID=prot_E-siliculosus-1a_F_contig14541.2662.1|Name=mRNA_E-siliculosus-1a_F_contig14541.2662.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=218bp MYYTNMYTYFYILCSVENLFFIKIYSFSRFSSIMFKIKKSLLIFFLTLSLback to top mRNA from alignment at E-siliculosus-1a_F_contig14541:149..802- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14541.2662.1 ID=mRNA_E-siliculosus-1a_F_contig14541.2662.1|Name=mRNA_E-siliculosus-1a_F_contig14541.2662.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=654bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14541:149..802- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14541:149..802- >mRNA_E-siliculosus-1a_F_contig14541.2662.1 ID=mRNA_E-siliculosus-1a_F_contig14541.2662.1|Name=mRNA_E-siliculosus-1a_F_contig14541.2662.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1308bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14541:149..802- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |