mRNA_E-siliculosus-1a_F_contig1454.2659.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1454.2659.1
Unique NamemRNA_E-siliculosus-1a_F_contig1454.2659.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1454.2659.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.120e-49
Identity = 93/135 (68.89%), Postives = 102/135 (75.56%), Query Frame = 1 
Query:    1 LEFCGACRSVPTLQVRVDRQAPPSLWSPRKSNTTPNKRCREVCIMSRVPAVPAFGWMWALPMEILLPRSTTGLHPGPENRRSTELSSAASLGRGGWFQKLRRVVFPSERSVNSVSWPASLRRLSFGRECNQPIVG 405
            LEFCGACRS  +  V++ RQ P SLWSPRKS+ T  KR RE CI SRVPAV A GWMWALPMEILLPRS T LH   ENR+ T  SSA S GR GWFQKL R++F SERSVNSVSWPA L+ LSFG   NQPI+G
Sbjct:   60 LEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQPIIG 194
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BLAST of mRNA_E-siliculosus-1a_F_contig1454.2659.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 4.470e-36
Identity = 77/135 (57.04%), Postives = 92/135 (68.15%), Query Frame = 1 
Query:    1 LEFCGACRSVPTLQVRVDRQAPPSLWSPRKSNTTPNKRCREVCIMSRVPAVPAFGWMWALPMEILLPRSTTGLHPGPENRRSTELSSAASLGRGGWFQKLRRVVFPSERSVNSVSWPASLRRLSFGRECNQPIVG 405
            LE CGACR V TL VRV  Q PPSLW P +++TT N R  +VCI SRVP V AFG  WALPM +L  RS T +  G   RR+   SSAASL    W Q+L+R+VF S+ +VN+ SWPASL++LSFG   NQ IVG
Sbjct:   40 LEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAIVG 174
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BLAST of mRNA_E-siliculosus-1a_F_contig1454.2659.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.040e-33
Identity = 73/132 (55.30%), Postives = 86/132 (65.15%), Query Frame = 1 
Query:    1 LEFCGACRSVPTLQVRVDRQAPPSLWSPRKSNTTPNKRCREVCIMSRVPAVPAFGWMWALPMEILLPRSTTGLHPGPENRRSTELSSAASLGRGGWFQK-LRRVVFPSERSVNSVSWPASLRRLSFGRECNQ 393
            LEFCGACR VPTL VRVDRQ P SLWSP KS+ T  KR RE C+ +RVPAV A G  WAL ME+LL  S   L    + RR +  SS ASLG   W Q  L+R+VF S+   ++ SWPASL +L FG   +Q
Sbjct:   48 LEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDMPASTASWPASLPQLLFGDRFDQ 179
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BLAST of mRNA_E-siliculosus-1a_F_contig1454.2659.1 vs. uniprot
Match: A0A6H5L3M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.690e-19
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 1 
Query:    1 LEFCGACRSVPTLQVRVDRQAPPSLWSPRKSNTTPNKRCREVCIMSRVPAVPAFGWMWALPMEILLPRSTTGLHPGPENRRSTELSSAASLGRGGWFQKLRRVVFPSERSVNSVSWPASLRRLSFGRECNQPIVGAV 411
            L+FCG CRS   L+VRV+  APPSLWSP KS +            +RVPAV A+GW W++P++ LL           E  R      A  L    W Q L+++ F  + +V   SWPASL+ L+FG   NQPI+G V
Sbjct:  135 LKFCGVCRSTSILRVRVEHNAPPSLWSPTKSFSYALPDA-----WNRVPAVRAYGWTWSIPVDTLLKVCDLRYWAKAELSRRGSFPEA-KLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILGVV 265
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BLAST of mRNA_E-siliculosus-1a_F_contig1454.2659.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.360e-13
Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 1 
Query:    1 LEFCGACRSVPTLQVRVDRQAPPSLWSPRKSNTTPNKRCREVCIMSRVPAVPAFGWMWALPMEILLPRSTTGLHPGPENRRSTELSSAASLGRGGWFQKLRRVVFPSERSVNSVSWPASLRRLSFGRECNQ 393
            LEFC ACR VPT                  S++T     R V  +SR P V A+   WAL M++LL      L  G + RRS   SSAA+L    W Q+L+R+V   +  V + SWPASL++LSFG + N+
Sbjct:   50 LEFCVACRRVPT------------------SHSTSTVG-RLVSGVSRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161
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BLAST of mRNA_E-siliculosus-1a_F_contig1454.2659.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.490e-12
Identity = 43/108 (39.81%), Postives = 54/108 (50.00%), Query Frame = 1 
Query:    1 LEFCGACRSVPTLQVRVDRQAPPSLWSPRKSNTTPNKRCREVCIMSRVPAVPAFGWMWALPMEILLPRSTTGLHPGPENRRSTELSSAASLGRGGWFQKLRRVVFPSE 324
            L+ C ACRS PTL VRV    P SLWSP      PN +  +V ++SRVP V A    WA  ME L+ R+   L    E         AASLG   W   L ++V  ++
Sbjct:   40 LDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGLTQLVLDTD 147
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BLAST of mRNA_E-siliculosus-1a_F_contig1454.2659.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 9.050e-9
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 LEFCGACRSVPTLQVRVDRQAPPSLWSPRKSNTTPNKRCREV 126
            LEFCGACR VPTL VRVDR+ P SLWSPR +  T +KR R+V
Sbjct:   72 LEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKV 113
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BLAST of mRNA_E-siliculosus-1a_F_contig1454.2659.1 vs. uniprot
Match: A0A6H5KJ08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ08_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.580e-6
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  184 MEILLPRSTTGLHPGPENRRSTELSSAASLGRGGWFQKLRRVVFPSERSVNSVSWPASLRRLSFGRECNQPIVGAV 411
            M++L+ +    L  G   R+    SSAASLG   W  +++RV+F ++  VN+VSWPASLR+LSF    NQ ++G V
Sbjct:    1 MDVLMQKFAVQLRSGSGYRQVLRTSSAASLGLAIWPLRIKRVLFDTDVPVNTVSWPASLRQLSFVGAFNQ-VIGRV 75
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BLAST of mRNA_E-siliculosus-1a_F_contig1454.2659.1 vs. uniprot
Match: A0A6H5JJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.790e-6
Identity = 46/129 (35.66%), Postives = 56/129 (43.41%), Query Frame = 1 
Query:    1 LEFCGACRSVPTLQVRVDRQAPPSLWSPRKSNTTPNKRCREVCIMSRVPAVPAFGWMWALPMEILLPRSTTGLHPGPENRRSTELSSAASL-GRGGWFQKLRRVVFPSERS--VNSVSWPASLRRLSFG 378
            L  C ACRSVPTL VR+D QAP SLW P             V   SRVP V A    W          +   L  G    +  E+        R    +   R+VF  E S  ++S +WP SLR+L FG
Sbjct:  145 LALCSACRSVPTLHVRIDGQAPHSLWDPN------------VRTSSRVPVVLALRLTWVCGRM-----NDFVLDTGDRQWKVLEVLRLERFKSRSRPHRPKPRLVFDQEESSFLSSTAWPPSLRQLEFG 256
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1454.2659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K8K9_9PHAE1.120e-4968.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNI6_9PHAE4.470e-3657.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV1_9PHAE3.040e-3355.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3M5_9PHAE1.690e-1941.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2L2_9PHAE4.360e-1339.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7F9_ECTSI6.490e-1239.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0Z9_ECTSI9.050e-969.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ08_9PHAE1.580e-643.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJW8_9PHAE3.790e-635.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1454contigE-siliculosus-1a_F_contig1454:16374..17343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size969
Model size972
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927963.7273786-CDS-E-siliculosus-1a_F_contig1454:16373..173421622927963.7273786-CDS-E-siliculosus-1a_F_contig1454:16373..17342Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1454 16374..17342 +
1696318755.5682733-CDS-E-siliculosus-1a_F_contig1454:16373..173421696318755.5682733-CDS-E-siliculosus-1a_F_contig1454:16373..17342Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1454 16374..17342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1454.2659.1prot_E-siliculosus-1a_F_contig1454.2659.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1454 16374..17342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1454.2659.1

>prot_E-siliculosus-1a_F_contig1454.2659.1 ID=prot_E-siliculosus-1a_F_contig1454.2659.1|Name=mRNA_E-siliculosus-1a_F_contig1454.2659.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=323bp
LEFCGACRSVPTLQVRVDRQAPPSLWSPRKSNTTPNKRCREVCIMSRVPA
VPAFGWMWALPMEILLPRSTTGLHPGPENRRSTELSSAASLGRGGWFQKL
RRVVFPSERSVNSVSWPASLRRLSFGRECNQPIVGAVWPAALHQLSFGGY
FNQPIVGAVWPASLQQLSFRGYFNQSIVGAVWPVSLKKLSFEGHFNQPIV
GAVWPASLQQLSFDSDFNQPIVRVVWPASLRQLSFGYEFNQRIVGAVWPV
SLQRLSFRFSFNQPIVEAVWPAGLQQLSFGDYFNQPIVGIVWPASLQRLS
FGREFNQPIVGVVWPASLQQLSF
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mRNA from alignment at E-siliculosus-1a_F_contig1454:16374..17343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1454.2659.1 ID=mRNA_E-siliculosus-1a_F_contig1454.2659.1|Name=mRNA_E-siliculosus-1a_F_contig1454.2659.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=970bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1454:16374..17343+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGGAGTTTTGTGGGGCGTGCAGAAGTGTCCCGACCTTGCAAGTGCGTGT
CGATCGACAAGCACCTCCTAGCTTGTGGTCTCCCCGCAAATCAAACACCA
CACCCAACAAGCGCTGTCGAGAAGTTTGCATCATGAGTCGGGTGCCGGCT
GTGCCGGCTTTTGGTTGGATGTGGGCACTTCCGATGGAGATTCTACTGCC
TAGGTCCACCACTGGGCTGCACCCAGGGCCAGAAAATCGTCGGTCAACGG
AACTTTCATCTGCGGCAAGCCTAGGGCGCGGGGGTTGGTTTCAAAAGCTC
AGACGAGTGGTGTTTCCTTCGGAAAGGTCCGTGAATTCGGTTTCATGGCC
GGCGTCCCTACGGCGGCTATCGTTTGGTCGTGAGTGCAACCAACCCATCG
TCGGAGCGGTGTGGCCGGCCGCACTGCACCAGCTATCATTCGGGGGTTAT
TTCAACCAGCCCATCGTTGGAGCTGTGTGGCCGGCCTCCCTCCAGCAGCT
GTCGTTTCGGGGTTATTTCAACCAGTCCATTGTCGGAGCTGTGTGGCCTG
TCTCCTTGAAGAAGCTCTCATTTGAAGGACACTTCAACCAGCCCATCGTC
GGAGCCGTTTGGCCGGCCTCCCTGCAGCAGCTATCGTTTGATAGTGATTT
CAACCAGCCCATCGTCCGGGTCGTGTGGCCGGCCTCTCTGCGGCAGCTTT
CGTTTGGTTACGAATTCAACCAGCGCATCGTTGGAGCTGTGTGGCCCGTC
TCCCTGCAGCGGCTATCGTTTAGATTTTCTTTCAACCAGCCCATCGTTGA
AGCCGTGTGGCCGGCCGGCCTGCAGCAGCTATCGTTTGGGGATTATTTCA
ACCAACCTATCGTCGGAATCGTGTGGCCGGCCTCCCTGCAGAGGCTATCC
TTTGGGCGCGAATTCAACCAACCTATCGTCGGAGTGGTATGGCCGGCCTC
CCTGCAGCAGCTATCGTTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1454:16374..17343+

>mRNA_E-siliculosus-1a_F_contig1454.2659.1 ID=mRNA_E-siliculosus-1a_F_contig1454.2659.1|Name=mRNA_E-siliculosus-1a_F_contig1454.2659.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1938bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1454:16374..17343+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGGAGTTTTGTGGGGCGTGCAGAAGTGTCCCGACCTTGCAAGTGCGTGT
CGATCGACAAGCACCTCCTAGCTTGTGGTCTCCCCGCAAATCAAACACCA
CACCCAACAAGCGCTGTCGAGAAGTTTGCATCATGAGTCGGGTGCCGGCT
GTGCCGGCTTTTGGTTGGATGTGGGCACTTCCGATGGAGATTCTACTGCC
TAGGTCCACCACTGGGCTGCACCCAGGGCCAGAAAATCGTCGGTCAACGG
AACTTTCATCTGCGGCAAGCCTAGGGCGCGGGGGTTGGTTTCAAAAGCTC
AGACGAGTGGTGTTTCCTTCGGAAAGGTCCGTGAATTCGGTTTCATGGCC
GGCGTCCCTACGGCGGCTATCGTTTGGTCGTGAGTGCAACCAACCCATCG
TCGGAGCGGTGTGGCCGGCCGCACTGCACCAGCTATCATTCGGGGGTTAT
TTCAACCAGCCCATCGTTGGAGCTGTGTGGCCGGCCTCCCTCCAGCAGCT
GTCGTTTCGGGGTTATTTCAACCAGTCCATTGTCGGAGCTGTGTGGCCTG
TCTCCTTGAAGAAGCTCTCATTTGAAGGACACTTCAACCAGCCCATCGTC
GGAGCCGTTTGGCCGGCCTCCCTGCAGCAGCTATCGTTTGATAGTGATTT
CAACCAGCCCATCGTCCGGGTCGTGTGGCCGGCCTCTCTGCGGCAGCTTT
CGTTTGGTTACGAATTCAACCAGCGCATCGTTGGAGCTGTGTGGCCCGTC
TCCCTGCAGCGGCTATCGTTTAGATTTTCTTTCAACCAGCCCATCGTTGA
AGCCGTGTGGCCGGCCGGCCTGCAGCAGCTATCGTTTGGGGATTATTTCA
ACCAACCTATCGTCGGAATCGTGTGGCCGGCCTCCCTGCAGAGGCTATCC
TTTGGGCGCGAATTCAACCAACCTATCGTCGGAGTGGTATGGCCGGCCTC
CCTGCAGCAGCTATCGTTTCTGGAGTTTTGTGGGGCGTGCAGAAGTGTCC
CGACCTTGCAAGTGCGTGTCGATCGACAAGCACCTCCTAGCTTGTGGTCT
CCCCGCAAATCAAACACCACACCCAACAAGCGCTGTCGAGAAGTTTGCAT
CATGAGTCGGGTGCCGGCTGTGCCGGCTTTTGGTTGGATGTGGGCACTTC
CGATGGAGATTCTACTGCCTAGGTCCACCACTGGGCTGCACCCAGGGCCA
GAAAATCGTCGGTCAACGGAACTTTCATCTGCGGCAAGCCTAGGGCGCGG
GGGTTGGTTTCAAAAGCTCAGACGAGTGGTGTTTCCTTCGGAAAGGTCCG
TGAATTCGGTTTCATGGCCGGCGTCCCTACGGCGGCTATCGTTTGGTCGT
GAGTGCAACCAACCCATCGTCGGAGCGGTGTGGCCGGCCGCACTGCACCA
GCTATCATTCGGGGGTTATTTCAACCAGCCCATCGTTGGAGCTGTGTGGC
CGGCCTCCCTCCAGCAGCTGTCGTTTCGGGGTTATTTCAACCAGTCCATT
GTCGGAGCTGTGTGGCCTGTCTCCTTGAAGAAGCTCTCATTTGAAGGACA
CTTCAACCAGCCCATCGTCGGAGCCGTTTGGCCGGCCTCCCTGCAGCAGC
TATCGTTTGATAGTGATTTCAACCAGCCCATCGTCCGGGTCGTGTGGCCG
GCCTCTCTGCGGCAGCTTTCGTTTGGTTACGAATTCAACCAGCGCATCGT
TGGAGCTGTGTGGCCCGTCTCCCTGCAGCGGCTATCGTTTAGATTTTCTT
TCAACCAGCCCATCGTTGAAGCCGTGTGGCCGGCCGGCCTGCAGCAGCTA
TCGTTTGGGGATTATTTCAACCAACCTATCGTCGGAATCGTGTGGCCGGC
CTCCCTGCAGAGGCTATCCTTTGGGCGCGAATTCAACCAACCTATCGTCG
GAGTGGTATGGCCGGCCTCCCTGCAGCAGCTATCGTTT
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