mRNA_E-siliculosus-1a_F_contig14534.2658.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14534.2658.1
Unique NamemRNA_E-siliculosus-1a_F_contig14534.2658.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Match: A0A1V6LW38_9FLAO (Superoxide dismutase n=4 Tax=Croceivirga TaxID=2039220 RepID=A0A1V6LW38_9FLAO)

HSP 1 Score: 182 bits (462), Expect = 7.670e-57
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 SAAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK 261
            +AAG+RFGSGWAWLCVH GGKVEVCSTPNQDN LMPD GCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINW+KV+ELY ANK
Sbjct:  116 AAAGSRFGSGWAWLCVHKGGKVEVCSTPNQDNPLMPDTGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWDKVSELYEANK 202
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BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Match: A0A2T0MGT9_9FLAO (Superoxide dismutase n=1 Tax=Muricauda pacifica TaxID=1080225 RepID=A0A2T0MGT9_9FLAO)

HSP 1 Score: 182 bits (461), Expect = 1.090e-56
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 SAAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK 261
            SAAGTRFGSGWAWLCVH GGK+EVCSTPNQDN LMPD GCEGYPILGLDVWEHAYYLNYQNRRPDY+SAFFNVINW+KV+E Y ANK
Sbjct:  116 SAAGTRFGSGWAWLCVHKGGKLEVCSTPNQDNPLMPDTGCEGYPILGLDVWEHAYYLNYQNRRPDYISAFFNVINWDKVSEYYNANK 202
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BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Match: A0A7K0EBA0_9FLAO (Superoxide dismutase n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A7K0EBA0_9FLAO)

HSP 1 Score: 182 bits (461), Expect = 1.090e-56
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 SAAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK 261
            +AAGTRFGSGWAWLCVHPGGKVE+CSTPNQDNSLMP+ GC GYPILGLDVWEHAYYLNYQNRRPDY+ AFFNVINW+KVAEL+ ANK
Sbjct:  116 AAAGTRFGSGWAWLCVHPGGKVEICSTPNQDNSLMPNTGCGGYPILGLDVWEHAYYLNYQNRRPDYIGAFFNVINWDKVAELFAANK 202
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BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Match: A0A4U1M3X4_9FLAO (Superoxide dismutase n=1 Tax=Flavobacterium sp. ASW18X TaxID=2572595 RepID=A0A4U1M3X4_9FLAO)

HSP 1 Score: 181 bits (460), Expect = 1.540e-56
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 SAAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK 261
            +AAGTRFGSGWAWLCVH GGKVEVCSTPNQDN LMPD GCEGYPILGLDVWEHAYYLNYQN+RPDY+ AFFNVINW+KV+ELY+ANK
Sbjct:  116 AAAGTRFGSGWAWLCVHKGGKVEVCSTPNQDNPLMPDTGCEGYPILGLDVWEHAYYLNYQNKRPDYIQAFFNVINWDKVSELYSANK 202
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Match: A0A5B7SXV4_9FLAO (Superoxide dismutase n=1 Tax=Aggregatimonas sangjinii TaxID=2583587 RepID=A0A5B7SXV4_9FLAO)

HSP 1 Score: 181 bits (460), Expect = 1.540e-56
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 SAAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK 261
            SAAG+RFGSGWAWLCVHPGGKVEVCS+PNQDN LMP VGC G+PILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKV+ELY ANK
Sbjct:  116 SAAGSRFGSGWAWLCVHPGGKVEVCSSPNQDNPLMPGVGCGGFPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVSELYEANK 202
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Match: A0A7H9APY1_9FLAO (Superoxide dismutase n=1 Tax=Costertonia aggregata TaxID=343403 RepID=A0A7H9APY1_9FLAO)

HSP 1 Score: 180 bits (456), Expect = 6.260e-56
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 SAAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK 261
            SAAG+RFGSGWAWLCVH GGK+EVCSTPNQDN LMPD GCEG+PILGLDVWEHAYYLNYQNRRPDYV+AFFNVINW+KV+ELY ANK
Sbjct:  116 SAAGSRFGSGWAWLCVHKGGKLEVCSTPNQDNPLMPDTGCEGFPILGLDVWEHAYYLNYQNRRPDYVNAFFNVINWDKVSELYAANK 202
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BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Match: A0A6I2MPA0_9FLAO (Superoxide dismutase n=3 Tax=Maribacter TaxID=252356 RepID=A0A6I2MPA0_9FLAO)

HSP 1 Score: 179 bits (455), Expect = 8.890e-56
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    4 AAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK 261
            AAGTRFGSGWAWLCVH GGKVEVCSTPNQDN LMP  GCEG+PILGLDVWEHAYYLNYQNRRPDY++AFFNVINW+KVAELY ANK
Sbjct:  117 AAGTRFGSGWAWLCVHKGGKVEVCSTPNQDNPLMPSTGCEGFPILGLDVWEHAYYLNYQNRRPDYINAFFNVINWDKVAELYNANK 202
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BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Match: A4APK2_MARSH (Superoxide dismutase n=3 Tax=unclassified Maribacter TaxID=2615042 RepID=A4APK2_MARSH)

HSP 1 Score: 179 bits (455), Expect = 8.890e-56
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1 
Query:    4 AAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK 261
            AAGTRFGSGWAWLCVH GGKVEVCSTPNQDNSLMP+VGC G+PILGLDVWEHAYYLNYQNRRPDYV+AFFNVINW+KV+ELY ANK
Sbjct:  117 AAGTRFGSGWAWLCVHKGGKVEVCSTPNQDNSLMPNVGCGGHPILGLDVWEHAYYLNYQNRRPDYVNAFFNVINWSKVSELYAANK 202
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Match: A0A5S3PVV0_9FLAO (Superoxide dismutase n=1 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PVV0_9FLAO)

HSP 1 Score: 179 bits (453), Expect = 1.790e-55
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:    1 SAAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK 261
            +AAGTRFGSGWAWLCVHPGGKVEVCS+PNQDN LMP VGC G PILGLDVWEHAYYLNYQNRRPDYVSAFFNVINW+KVAELY+A+K
Sbjct:  116 TAAGTRFGSGWAWLCVHPGGKVEVCSSPNQDNPLMPSVGCGGQPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWDKVAELYSAHK 202
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Match: A0A2A5GR13_9FLAO (Superoxide dismutase n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2A5GR13_9FLAO)

HSP 1 Score: 178 bits (452), Expect = 2.540e-55
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 SAAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDVWEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK 261
            +AA TRFGSGWAWLCVH GGKVEVCSTPNQDN +MP +GC G+PILGLDVWEHAYYLNYQNRRPDY++AFFNV+NWNKVAELYTANK
Sbjct:  116 NAAATRFGSGWAWLCVHKGGKVEVCSTPNQDNPIMPGIGCGGFPILGLDVWEHAYYLNYQNRRPDYINAFFNVVNWNKVAELYTANK 202
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14534.2658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V6LW38_9FLAO7.670e-5790.80Superoxide dismutase n=4 Tax=Croceivirga TaxID=203... [more]
A0A2T0MGT9_9FLAO1.090e-5689.66Superoxide dismutase n=1 Tax=Muricauda pacifica Ta... [more]
A0A7K0EBA0_9FLAO1.090e-5688.51Superoxide dismutase n=2 Tax=Flavobacteriaceae Tax... [more]
A0A4U1M3X4_9FLAO1.540e-5688.51Superoxide dismutase n=1 Tax=Flavobacterium sp. AS... [more]
A0A5B7SXV4_9FLAO1.540e-5690.80Superoxide dismutase n=1 Tax=Aggregatimonas sangji... [more]
A0A7H9APY1_9FLAO6.260e-5688.51Superoxide dismutase n=1 Tax=Costertonia aggregata... [more]
A0A6I2MPA0_9FLAO8.890e-5689.53Superoxide dismutase n=3 Tax=Maribacter TaxID=2523... [more]
A4APK2_MARSH8.890e-5690.70Superoxide dismutase n=3 Tax=unclassified Maribact... [more]
A0A5S3PVV0_9FLAO1.790e-5589.66Superoxide dismutase n=1 Tax=Maribacter algarum Ta... [more]
A0A2A5GR13_9FLAO2.540e-5586.21Superoxide dismutase n=1 Tax=Flavobacteriaceae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14534contigE-siliculosus-1a_F_contig14534:3..266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size264
Model size264
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacteriia
COG Functional cat.P
EC1.15.1.1
EggNOG OGs1HX6F@117743,4NDZ4@976,COG0605@1,COG0605@2
EggNOG free text desc.Destroys radicals which are normally produced within the cells and which are toxic to biological systems
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
KEGG koko:K04564
Preferred namesodA
Seed eggNOG ortholog1004149.AFOE01000049_gene1931
Seed ortholog evalue1.4e-43
Seed ortholog score181.8
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927963.6761923-CDS-E-siliculosus-1a_F_contig14534:2..2661622927963.6761923-CDS-E-siliculosus-1a_F_contig14534:2..266Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14534 3..266 +
1696318755.555036-CDS-E-siliculosus-1a_F_contig14534:2..2661696318755.555036-CDS-E-siliculosus-1a_F_contig14534:2..266Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14534 3..266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14534.2658.1prot_E-siliculosus-1a_F_contig14534.2658.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14534 3..266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14534.2658.1

>prot_E-siliculosus-1a_F_contig14534.2658.1 ID=prot_E-siliculosus-1a_F_contig14534.2658.1|Name=mRNA_E-siliculosus-1a_F_contig14534.2658.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=88bp
SAAGTRFGSGWAWLCVHPGGKVEVCSTPNQDNSLMPDVGCEGYPILGLDV
WEHAYYLNYQNRRPDYVSAFFNVINWNKVAELYTANK*
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mRNA from alignment at E-siliculosus-1a_F_contig14534:3..266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14534.2658.1 ID=mRNA_E-siliculosus-1a_F_contig14534.2658.1|Name=mRNA_E-siliculosus-1a_F_contig14534.2658.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=264bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14534:3..266+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCGGCTGCAGGAACAAGATTTGGGTCAGGTTGGGCTTGGCTTTGCGTTCA
CCCAGGTGGTAAGGTTGAGGTTTGTTCCACACCAAACCAAGATAATTCTC
TAATGCCAGATGTTGGCTGTGAAGGTTACCCTATATTAGGTCTTGATGTT
TGGGAACATGCTTACTATTTAAATTATCAAAATAGAAGACCTGATTACGT
AAGTGCCTTTTTCAATGTAATTAATTGGAACAAAGTGGCTGAACTATATA
CCGCAAATAAATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14534:3..266+

>mRNA_E-siliculosus-1a_F_contig14534.2658.1 ID=mRNA_E-siliculosus-1a_F_contig14534.2658.1|Name=mRNA_E-siliculosus-1a_F_contig14534.2658.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14534:3..266+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCGGCTGCAGGAACAAGATTTGGGTCAGGTTGGGCTTGGCTTTGCGTTCA
CCCAGGTGGTAAGGTTGAGGTTTGTTCCACACCAAACCAAGATAATTCTC
TAATGCCAGATGTTGGCTGTGAAGGTTACCCTATATTAGGTCTTGATGTT
TGGGAACATGCTTACTATTTAAATTATCAAAATAGAAGACCTGATTACGT
AAGTGCCTTTTTCAATGTAATTAATTGGAACAAAGTGGCTGAACTATATA
CCGCAAATAAATAGTCGGCTGCAGGAACAAGATTTGGGTCAGGTTGGGCT
TGGCTTTGCGTTCACCCAGGTGGTAAGGTTGAGGTTTGTTCCACACCAAA
CCAAGATAATTCTCTAATGCCAGATGTTGGCTGTGAAGGTTACCCTATAT
TAGGTCTTGATGTTTGGGAACATGCTTACTATTTAAATTATCAAAATAGA
AGACCTGATTACGTAAGTGCCTTTTTCAATGTAATTAATTGGAACAAAGT
GGCTGAACTATATACCGCAAATAAATAG
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