mRNA_E-siliculosus-1a_F_contig1453.2656.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1453.2656.1
Unique NamemRNA_E-siliculosus-1a_F_contig1453.2656.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1453.2656.1 vs. uniprot
Match: D7FU51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU51_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 8.640e-93
Identity = 152/246 (61.79%), Postives = 179/246 (72.76%), Query Frame = 1 
Query:    1 MCLSRTGENLLKDILKNDSCAAAVKRVFEKSKSSILDKTRAVWTRWDELISGNTGKSSKQRKCRVGLVEDPPEERERHLEIYMRLAFINGTRTVMEAIDKIDPEFAEWGMERFVEAE--------DDIGGSDHLFGGTPEQVEDGTRGVTMTDGKWRVAGLVEKLEAAADRDLSKVCKFHDIEGHGVVRWCMVMALVGREMLSKHSGGRVNGMFGPLQTTGD*MSP-GVFGKVFGEPGRSFFGMGN 711
            MCL+R G +LL +IL+ND C  A KR+FEK   SILDKTR   T WD +I+G+TG+SSKQRKCR+GLV+D PE+RER+LEIYMRL F++G R VMEAIDKID EF +WG+ER  EA+        DDI G DHLFGGT EQV  G  GV  +      +G + K    ADR+L   CK HDIEGHGVVRWCMVMALVGR ML KH+ G+V+ MFGPLQ  G  MSP GVFGKVF E GRSFFG+G+
Sbjct:    1 MCLTRNGGHLLLEILENDPCEEAAKRMFEKISKSILDKTRNERTSWDAVINGSTGESSKQRKCRIGLVDDSPEDRERNLEIYMRLVFVDGIRPVMEAIDKIDSEFIDWGVERLAEAKGVSTSFDRDDIKGIDHLFGGTREQV--GEEGVVYSR-----SGCLFKQTDDADRELCNACKVHDIEGHGVVRWCMVMALVGRTMLKKHNKGKVSCMFGPLQANGAQMSPVGVFGKVFKELGRSFFGVGD 239
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BLAST of mRNA_E-siliculosus-1a_F_contig1453.2656.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.010e-16
Identity = 55/144 (38.19%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:   10 SRTGENLLKDILKNDSCAAAVKRVFEKSKSSILDKTRAVWTRWDELISGNTGKSSKQRKCRVGLVEDPPEERERHLEIYMRLAFINGTRTVMEAIDKIDPEFAEWGMERFVEAE--------DDIGGSDHLFGGTPEQVEDGTR 417
            +R    LL+ +L  DS   AV+R  +    S     R +        +G  G   K RK RV LVE+ PEERE  +++++     NG + VMEAIDK+DP F +WG++R  EA+        DDIGG +HL G T E V +G +
Sbjct:  303 ARFSPRLLEHVLGADSSHGAVQRTLDHC-HSFFQNARNLRKHVAAKTNGGVGDGIKLRKQRVPLVENTPEEREETMDMFVGAMSANGCQRVMEAIDKVDPGFVDWGLDRLTEAKNASTLFELDDIGGEEHLLGKTSEGVAEGEK 445
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BLAST of mRNA_E-siliculosus-1a_F_contig1453.2656.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.980e-9
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:  466 KLEAAADRDLSKVCKFHDIEGHGVVRWCMVMALVGREMLSKHSGGRVNGMFGPLQTTGD*MSPGVFGKVFGEPGRSFFGMGN 711
            K   +A+ +L  V K H+I G  V+RWCMVM LVGRE L K  G  V+  FGPL   G  +S  VF KV    GR++FG+ N
Sbjct: 1305 KQTESANGELKNVLKEHEIWGPDVIRWCMVMNLVGREFLRKKIGS-VDPEFGPLAPDGQRLSDDVFKKVVVAVGRTYFGVDN 1385
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BLAST of mRNA_E-siliculosus-1a_F_contig1453.2656.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.540e-8
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:  466 KLEAAADRDLSKVCKFHDIEGHGVVRWCMVMALVGREMLSKHSGGRVNGMFGPLQTTGD*MSPGVFGKVFGEPGRSFFGMGN 711
            K    A++ L  V K H+I G  VVRW MVM+LVGR  L + + G V+  FGPL + G  ++   FGK+F +  R++FG+ N
Sbjct:  324 KQHRTANKRLDTVLKEHEIHGADVVRWVMVMSLVGRAFLREDNNGVVDESFGPLNSNGTQITADTFGKIF-KVMRAYFGVDN 404
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BLAST of mRNA_E-siliculosus-1a_F_contig1453.2656.1 vs. uniprot
Match: A0A6H5J7T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7T3_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.190e-8
Identity = 49/151 (32.45%), Postives = 69/151 (45.70%), Query Frame = 1 
Query:  160 TGKSSKQRKCRVGLVEDPPEERERHLEIYMRLAFINGTRTVMEAIDKIDPEFAEWGMER----------------FVEAEDDIGGSDHLFGGTPEQVEDGTRGVTMTDGKWRVAGLVEKLEAAAD---RDLSKVCKFHDIEGHGVVRWCMV 555
            T  S K+R+ RV +V+  PEERE+ ++  M     NG   +M+ + K DP F EWG E                 F+E  DD    D+L G  PE+++ G R         RVA L+ KLE   D   +D+S       + G     +CMV
Sbjct:  378 TRASVKERRLRVIVVDQTPEEREKSIDTCMAAIAKNGCGRLMDTVKKHDPGFVEWGKEHLAKAKINSTIWSSREEFIEKPDDGRSEDNLEGKAPEEIKHGQR---------RVANLMAKLEVGDDFTCKDISVFSVALKLPGCSQQPFCMV 519
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1453.2656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FU51_ECTSI8.640e-9361.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ27_ECTSI1.010e-1638.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L073_9PHAE1.980e-947.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3S0_ECTSI1.540e-842.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7T3_9PHAE2.190e-832.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1453contigE-siliculosus-1a_F_contig1453:26307..27300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size645
Model size773
Exons3
Ec32 orthologEc-25_000640.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1453.2656.1prot_E-siliculosus-1a_F_contig1453.2656.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1453 26435..27300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927963.4745634-UTR-E-siliculosus-1a_F_contig1453:26306..264341622927963.4745634-UTR-E-siliculosus-1a_F_contig1453:26306..26434Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1453 26307..26434 -
1696318755.4419475-UTR-E-siliculosus-1a_F_contig1453:26306..264341696318755.4419475-UTR-E-siliculosus-1a_F_contig1453:26306..26434Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1453 26307..26434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927963.4905198-CDS-E-siliculosus-1a_F_contig1453:26434..265981622927963.4905198-CDS-E-siliculosus-1a_F_contig1453:26434..26598Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1453 26435..26598 -
1696318755.469263-CDS-E-siliculosus-1a_F_contig1453:26434..265981696318755.469263-CDS-E-siliculosus-1a_F_contig1453:26434..26598Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1453 26435..26598 -
1622927963.5069487-CDS-E-siliculosus-1a_F_contig1453:26795..269221622927963.5069487-CDS-E-siliculosus-1a_F_contig1453:26795..26922Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1453 26796..26922 -
1696318755.4976778-CDS-E-siliculosus-1a_F_contig1453:26795..269221696318755.4976778-CDS-E-siliculosus-1a_F_contig1453:26795..26922Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1453 26796..26922 -
1622927963.5262234-CDS-E-siliculosus-1a_F_contig1453:26946..273001622927963.5262234-CDS-E-siliculosus-1a_F_contig1453:26946..27300Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1453 26947..27300 -
1696318755.5100584-CDS-E-siliculosus-1a_F_contig1453:26946..273001696318755.5100584-CDS-E-siliculosus-1a_F_contig1453:26946..27300Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1453 26947..27300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1453.2656.1

>prot_E-siliculosus-1a_F_contig1453.2656.1 ID=prot_E-siliculosus-1a_F_contig1453.2656.1|Name=mRNA_E-siliculosus-1a_F_contig1453.2656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=215bp
MCLSRTGENLLKDILKNDSCAAAVKRVFEKSKSSILDKTRAVWTRWDELI
SGNTGKSSKQRKCRVGLVEDPPEERERHLEIYMRLAFINGTRTVMEAIDK
IDPEFAEWGMERFVEAEDDIGGSDHLFGGTPEQVEDGTRGVTMTDGKWRV
AGLVEKLEAAADRDLSKVCKFHDIEGHGVVRWCMVMALVGREMLSKHSGG
RVNGMFGPLQTTGD*
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mRNA from alignment at E-siliculosus-1a_F_contig1453:26307..27300-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1453.2656.1 ID=mRNA_E-siliculosus-1a_F_contig1453.2656.1|Name=mRNA_E-siliculosus-1a_F_contig1453.2656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=994bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1453:26307..27300- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGCCTCTCGCGTACCGGTGAGAATCTCCTCAAGGACATCCTGAAAAA
CGACTCCTGTGCAGCGGCGGTGAAGCGTGTCTTCGAGAAGTCCAAGTCGT
CCATCCTCGACAAAACACGAGCAGTGTGGACAAGGTGGGACGAGCTAATC
AGTGGCAACACAGGAAAATCCAGCAAGCAGCGAAAGTGCAGGGTCGGTTT
GGTCGAAGATCCTCCAGAGGAGAGGGAGCGGCACCTCGAGATATACATGC
GTCTCGCGTTCATCAACGGGACCCGCACCGTGATGGAAGCCATCGACAAG
ATTGATCCAGAGTTTGCCGAGTGGGGGATGGAGCGTTTTGTAGAAGCGGA
AGACGTATCTAGCGCCTTCGAGTGATAGGACATCGGGGGGAGCGACCATC
TTTTCGGCGGCACTCCCGAGCAAGTGGAGGATGGTACGAGGGGGGTCACC
ATGACCGATGGGAAATGGAGGGTCGCTGGGCTGGTGGAGAAGCTGGAGGC
CGCTGGTATCACCTGTCGATCCTTCTCCTTCATCGGTGTGGCTACAATGC
TTGCTATCATTCTATCCGGAGCCAGCATTCGGCCAGAAGACTTCTTCTTC
TTGTAACTCAAAACCATCTGGTACGACAGGGAAGTTGGTGAAGAGGGCGA
AGGCATACTCGAGATTGGGATGCCCATCGACGCAAAGCAGACGGGAGATA
AGCCGATCGTGACTTGAGCAAGGTGTGCAAGTTTCACGACATCGAGGGAC
ACGGGGTCGTGAGGTGGTGCATGGTGATGGCGCTGGTTGGGAGAGAGATG
CTCAGCAAGCACAGCGGCGGGAGAGTGAACGGCATGTTCGGGCCTCTTCA
AACAACCGGAGACTAGATGAGCCCCGGCGTGTTCGGCAAAGTGTTCGGGG
AGCCCGGGCGATCATTTTTCGGCATGGGGAACAGGGCGTAAATGCCATGC
AGACCGTCCAGGACACGATCGCCGTCGAGCACGGGCTAGATATA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1453:26307..27300-

>mRNA_E-siliculosus-1a_F_contig1453.2656.1 ID=mRNA_E-siliculosus-1a_F_contig1453.2656.1|Name=mRNA_E-siliculosus-1a_F_contig1453.2656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1453:26307..27300- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGCCTCTCGCGTACCGGTGAGAATCTCCTCAAGGACATCCTGAAAAA
CGACTCCTGTGCAGCGGCGGTGAAGCGTGTCTTCGAGAAGTCCAAGTCGT
CCATCCTCGACAAAACACGAGCAGTGTGGACAAGGTGGGACGAGCTAATC
AGTGGCAACACAGGAAAATCCAGCAAGCAGCGAAAGTGCAGGGTCGGTTT
GGTCGAAGATCCTCCAGAGGAGAGGGAGCGGCACCTCGAGATATACATGC
GTCTCGCGTTCATCAACGGGACCCGCACCGTGATGGAAGCCATCGACAAG
ATTGATCCAGAGTTTGCCGAGTGGGGGATGGAGCGTTTTGTAGAAGCGGA
AGACATGTGCCTCTCGCGTACCGGTGAGAATCTCCTCAAGGACATCCTGA
AAAACGACTCCTGTGCAGCGGCGGTGAAGCGTGTCTTCGAGAAGTCCAAG
TCGTCCATCCTCGACAAAACACGAGCAGTGTGGACAAGGTGGGACGAGCT
AATCAGTGGCAACACAGGAAAATCCAGCAAGCAGCGAAAGTGCAGGGTCG
GTTTGGTCGAAGATCCTCCAGAGGAGAGGGAGCGGCACCTCGAGATATAC
ATGCGTCTCGCGTTCATCAACGGGACCCGCACCGTGATGGAAGCCATCGA
CAAGATTGATCCAGAGTTTGCCGAGTGGGGGATGGAGCGTTTTGTAGAAG
CGGAAGACGACATCGGGGGGAGCGACCATCTTTTCGGCGGCACTCCCGAG
CAAGTGGAGGATGGTACGAGGGGGGTCACCATGACCGATGGGAAATGGAG
GGTCGCTGGGCTGGTGGAGAAGCTGGAGGCCGCTGGACATCGGGGGGAGC
GACCATCTTTTCGGCGGCACTCCCGAGCAAGTGGAGGATGGTACGAGGGG
GGTCACCATGACCGATGGGAAATGGAGGGTCGCTGGGCTGGTGGAGAAGC
TGGAGGCCGCTGCCGATCGTGACTTGAGCAAGGTGTGCAAGTTTCACGAC
ATCGAGGGACACGGGGTCGTGAGGTGGTGCATGGTGATGGCGCTGGTTGG
GAGAGAGATGCTCAGCAAGCACAGCGGCGGGAGAGTGAACGGCATGTTCG
GGCCTCTTCAAACAACCGGAGACTAGCCGATCGTGACTTGAGCAAGGTGT
GCAAGTTTCACGACATCGAGGGACACGGGGTCGTGAGGTGGTGCATGGTG
ATGGCGCTGGTTGGGAGAGAGATGCTCAGCAAGCACAGCGGCGGGAGAGT
GAACGGCATGTTCGGGCCTCTTCAAACAACCGGAGACTAG
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