mRNA_E-siliculosus-1a_F_contig14504.2630.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14504.2630.1
Unique NamemRNA_E-siliculosus-1a_F_contig14504.2630.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14504.2630.1 vs. uniprot
Match: A0A5S3PHY2_9FLAO (Uncharacterized protein n=1 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PHY2_9FLAO)

HSP 1 Score: 223 bits (569), Expect = 1.080e-72
Identity = 115/151 (76.16%), Postives = 133/151 (88.08%), Query Frame = 1
Query:    1 MEMTKTTCCKTKYAAPKKTEAANGSMSFLSTLILILIPKCPLCLSAYMSAMVLFFDIQYTTLVPILLHTKPVMGLLIITMILLNRKDKRTLIALAIAGIALTFLILKTYYSIAVFMWAWFIYIAFVFAIWYNGNFQYFYRFIRSRKKEEIV 453
            ME+ KT CCK+K    KK EAANGSMSFLST++LILIPKCPLC++AYMSAMVLFFDI+YTTLVP+LLHTKP+MGLLI+TMILLNRKDKRTLI+L IA +ALTFL+LKTY+ IA+ M  W IYIAF+FAIWYNGNFQYFYRFIR  +  E+V
Sbjct:    1 MEIAKTGCCKSKMQTTKKVEAANGSMSFLSTILLILIPKCPLCMTAYMSAMVLFFDIEYTTLVPVLLHTKPIMGLLIVTMILLNRKDKRTLISLLIASVALTFLVLKTYFGIALLMPDWLIYIAFIFAIWYNGNFQYFYRFIRFGRNNEMV 151          
BLAST of mRNA_E-siliculosus-1a_F_contig14504.2630.1 vs. uniprot
Match: A0A1T5BLK7_9FLAO (Uncharacterized protein n=2 Tax=Maribacter TaxID=252356 RepID=A0A1T5BLK7_9FLAO)

HSP 1 Score: 223 bits (567), Expect = 2.400e-72
Identity = 110/152 (72.37%), Postives = 137/152 (90.13%), Query Frame = 1
Query:    1 MEMTKTTCCKTKYAAPKKTEAANGSMSFLSTLILILIPKCPLCLSAYMSAMVLFFDIQYTTLVPILLHTKPVMGLLIITMILLNRKDKRTLIALAIAGIALTFLILKTYYSIAVFMWAWFIYIAFVFAIWYNGNFQYFYRFIRSRKKEEIVS 456
            ME  KTTCCKTK+ + KK EAA+GSMSF+ST+++ILIPKCPLCL+AYMSAMVLFFD++Y+TLVP+LLHTKP+M LLIITMILLNRKDKRT I+L IAGIALTFL+LKTY++ A+ +  W +YIAF+FAIWYNGNFQYFYRF++S+K  ++V+
Sbjct:    1 METIKTTCCKTKFVSVKKVEAASGSMSFISTILMILIPKCPLCLTAYMSAMVLFFDVEYSTLVPVLLHTKPIMALLIITMILLNRKDKRTYISLGIAGIALTFLVLKTYFATALLLPDWILYIAFIFAIWYNGNFQYFYRFLKSKKNSQVVA 152          
BLAST of mRNA_E-siliculosus-1a_F_contig14504.2630.1 vs. uniprot
Match: A0A5B7SV61_9FLAO (Uncharacterized protein n=1 Tax=Aggregatimonas sangjinii TaxID=2583587 RepID=A0A5B7SV61_9FLAO)

HSP 1 Score: 220 bits (560), Expect = 3.300e-71
Identity = 112/151 (74.17%), Postives = 132/151 (87.42%), Query Frame = 1
Query:    1 MEMTKTTCCKTKYAAPKKTEAANGSMSFLSTLILILIPKCPLCLSAYMSAMVLFFDIQYTTLVPILLHTKPVMGLLIITMILLNRKDKRTLIALAIAGIALTFLILKTYYSIAVFMWAWFIYIAFVFAIWYNGNFQYFYRFIRSRKKEEIV 453
            ME+TKT CCKTK   PKK EAA GSMSF ST++LIL+PKCPLCL+AYMSA+VLFFDI+YTTLVP+LLHTKP+MGL II  IL+NRKD RTLIALAIAG+ALTFL+LKTY+  A+F+  W IYIAF+FAIWYNGNF+YFYRFIR  +K E++
Sbjct:    1 MEITKTGCCKTKLHTPKKVEAATGSMSFFSTILLILVPKCPLCLTAYMSALVLFFDIEYTTLVPVLLHTKPIMGLFIIITILMNRKDNRTLIALAIAGLALTFLVLKTYFVSALFLPDWIIYIAFIFAIWYNGNFRYFYRFIRFSRKGEVI 151          
BLAST of mRNA_E-siliculosus-1a_F_contig14504.2630.1 vs. uniprot
Match: UPI00126A7A94 (hypothetical protein n=1 Tax=Pelagihabitans pacificus TaxID=2696054 RepID=UPI00126A7A94)

HSP 1 Score: 181 bits (460), Expect = 3.950e-56
Identity = 99/148 (66.89%), Postives = 118/148 (79.73%), Query Frame = 1
Query:    1 MEMTKTTCCKTKYAAPKKTEAANGSMSFLSTLILILIPKCPLCLSAYMSAMVLFFDIQYTTLVPILLHTKPVMGLLIITMILLNRKDKRTLIALAIAGIALTFLILKTYYSIAVFMWAWFIYIAFVFAIWYNGNFQYFYRFIRSRKKE 444
            ME  +T CCKTK ++  K   ANGSMSFLST++LIL+PKCPLCL+AYMSA+VLFFDI    L P LLH KPVM +LII +ILLNRKD+RTL++L+I+ +AL FLI KTYY+ AVF   W +Y AFVFAIWYNGNF+YFYRFIR R  E
Sbjct:    1 METVETGCCKTKRSSQNKMSGANGSMSFLSTVLLILLPKCPLCLTAYMSAVVLFFDIDNAQLAPFLLHAKPVMAILIILLILLNRKDRRTLVSLSISVVALGFLIGKTYYNTAVFP-DWLLYTAFVFAIWYNGNFRYFYRFIRFRHNE 147          
BLAST of mRNA_E-siliculosus-1a_F_contig14504.2630.1 vs. uniprot
Match: UPI001CCB6B42 (hypothetical protein n=1 Tax=Robertkochia marina TaxID=1227945 RepID=UPI001CCB6B42)

HSP 1 Score: 123 bits (309), Expect = 4.350e-33
Identity = 72/149 (48.32%), Postives = 102/149 (68.46%), Query Frame = 1
Query:    1 MEMTKTTCCKT-KYAAPKKTEA-ANGSMSFLSTLILILIPKCPLCLSAYMSAMVLFFDIQYTTLVPILLHTKPVMGLLIITMILLNRKDKRTLIALAIAGIALTFLILKTYYSIAVFMWAWFIYIAFVFAIWYNGNFQYFYRFIRSRKK 441
            M+  KT+CC   K  A KK  +  +G MSFLST ++I+IPKCP C++AY  +++LFFDI+   L P++ H KPV+GL+II +I  N   K++ +AL IA  A   L+L TY +I + +  W IY+AF FA WYNGNF+YFY F++S K+
Sbjct:    1 MKAEKTSCCNAEKVVAVKKAPSFKSGFMSFLSTALIIIIPKCPFCIAAYAGSLLLFFDIEIMALQPVVDHGKPVLGLIIICLIAFNYNVKKSKVALGIAITAFAILLLATYANIHL-LPEWLIYLAFFFAAWYNGNFKYFYSFLKSGKQ 148          
BLAST of mRNA_E-siliculosus-1a_F_contig14504.2630.1 vs. uniprot
Match: A0A4S3M3K0_9FLAO (Uncharacterized protein n=1 Tax=Robertkochia marina TaxID=1227945 RepID=A0A4S3M3K0_9FLAO)

HSP 1 Score: 122 bits (305), Expect = 1.390e-32
Identity = 69/149 (46.31%), Postives = 100/149 (67.11%), Query Frame = 1
Query:    1 MEMTKTTCCKTKYAAPKKTEAA--NGSMSFLSTLILILIPKCPLCLSAYMSAMVLFFDIQYTTLVPILLHTKPVMGLLIITMILLNRKDKRTLIALAIAGIALTFLILKTYYSIAVFMWAWFIYIAFVFAIWYNGNFQYFYRFIRSRKK 441
            M+  KT+CC  + A   K      +G MSFLST ++I+IPKCP C++AY  ++++FFDI+   L PI+ H KPV+GL+II +I  N   K++ +AL IA  A+T L+L TY  + + +  W IY+AF FA WYNGNF+YFY F+R  ++
Sbjct:    1 MKPEKTSCCNAEKAVAVKNAPTFKSGFMSFLSTALIIIIPKCPFCIAAYAGSILMFFDIEIMALQPIVDHGKPVLGLIIIALIAFNYNVKKSKVALGIALAAMTVLLLTTYGKVYI-VPEWMIYLAFFFAAWYNGNFKYFYSFLRRGRQ 148          
BLAST of mRNA_E-siliculosus-1a_F_contig14504.2630.1 vs. uniprot
Match: A0A559PNC3_9FLAO (Uncharacterized protein n=1 Tax=Gillisia sp. Hel_I_86 TaxID=1249981 RepID=A0A559PNC3_9FLAO)

HSP 1 Score: 121 bits (304), Expect = 2.150e-32
Identity = 67/148 (45.27%), Postives = 100/148 (67.57%), Query Frame = 1
Query:    1 MEMTKTTCCKTKYAAPKKTEAA--NGSMSFLSTLILILIPKCPLCLSAYMSAMVLFFDIQYTTLVPILLHTKPVMGLLIITMILLNRKDKRTLIALAIAGIALTFLILKTYYSIAVFMWAWFIYIAFVFAIWYNGNFQYFYRFIRSRK 438
            ME   T+CC ++  A  K      +G MSFLST ++I++PKCP C++AY  A+++FFD++   L+P  LH KPV+G++II +I  N   K++ IAL+    AL  L+L TY +I + +  W IYI F+FA+WYNGNF+YFY F+++ K
Sbjct:    1 MESENTSCCNSQETAVLKKAHTFKSGLMSFLSTALIIVLPKCPFCVAAYSGAILMFFDVENEALIPFFLHGKPVLGVVIIALIFFNFNTKKSKIALSXXIFALILLLLSTYGNIRL-VPDWIIYIGFLFAVWYNGNFRYFYNFLKTSK 147          
BLAST of mRNA_E-siliculosus-1a_F_contig14504.2630.1 vs. uniprot
Match: A0A2E4Q9W3_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E4Q9W3_9FLAO)

HSP 1 Score: 105 bits (261), Expect = 6.620e-26
Identity = 62/144 (43.06%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    1 MEMTKTTCCKTKYAAPKKTEAANGS--MSFLSTLILILIPKCPLCLSAYMSAMVLFFDIQYTTLVPILLHTKPVMGLLIITMILLNRKDKRTLIALAIAGIALTFLILKTYYSIAVFMWAWFIYIAFVFAIWYNGNFQYFYRFI 426
            M+ T   CCK    + KKT   N S   SF ++++LIL PKCP C+ AY S+++LF DI+ + L+PI+ H KP++G L + +I  N K K+T+I+L++  IA+ FL++  Y S+ +F   W IY  F+F++WYN NF +F  FI
Sbjct:    1 MKNTTDLCCK--KISSKKTWKFNTSENASFFTSILLILAPKCPYCILAYSSSILLFLDIETSPLMPIMSHLKPLLGGLTLLIIYFNYKGKKTIISLSLGSIAMIFLLISNYSSLLIFQ-DWLIYSIFIFSVWYNANFIFFKNFI 141          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14504.2630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A5S3PHY2_9FLAO1.080e-7276.16Uncharacterized protein n=1 Tax=Maribacter algarum... [more]
A0A1T5BLK7_9FLAO2.400e-7272.37Uncharacterized protein n=2 Tax=Maribacter TaxID=2... [more]
A0A5B7SV61_9FLAO3.300e-7174.17Uncharacterized protein n=1 Tax=Aggregatimonas san... [more]
UPI00126A7A943.950e-5666.89hypothetical protein n=1 Tax=Pelagihabitans pacifi... [more]
UPI001CCB6B424.350e-3348.32hypothetical protein n=1 Tax=Robertkochia marina T... [more]
A0A4S3M3K0_9FLAO1.390e-3246.31Uncharacterized protein n=1 Tax=Robertkochia marin... [more]
A0A559PNC3_9FLAO2.150e-3245.27Uncharacterized protein n=1 Tax=Gillisia sp. Hel_I... [more]
A0A2E4Q9W3_9FLAO6.620e-2643.06Uncharacterized protein n=1 Tax=Flavobacteriaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14504contigE-siliculosus-1a_F_contig14504:294..752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size459
Model size459
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927961.624882-CDS-E-siliculosus-1a_F_contig14504:293..7521622927961.624882-CDS-E-siliculosus-1a_F_contig14504:293..752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14504 294..752 -
1696318754.7108784-CDS-E-siliculosus-1a_F_contig14504:293..7521696318754.7108784-CDS-E-siliculosus-1a_F_contig14504:293..752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14504 294..752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14504.2630.1prot_E-siliculosus-1a_F_contig14504.2630.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14504 294..752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14504.2630.1

>prot_E-siliculosus-1a_F_contig14504.2630.1 ID=prot_E-siliculosus-1a_F_contig14504.2630.1|Name=mRNA_E-siliculosus-1a_F_contig14504.2630.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=153bp
MEMTKTTCCKTKYAAPKKTEAANGSMSFLSTLILILIPKCPLCLSAYMSA
MVLFFDIQYTTLVPILLHTKPVMGLLIITMILLNRKDKRTLIALAIAGIA
LTFLILKTYYSIAVFMWAWFIYIAFVFAIWYNGNFQYFYRFIRSRKKEEI
VS*
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mRNA from alignment at E-siliculosus-1a_F_contig14504:294..752-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14504.2630.1 ID=mRNA_E-siliculosus-1a_F_contig14504.2630.1|Name=mRNA_E-siliculosus-1a_F_contig14504.2630.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=459bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14504:294..752- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAAATGACGAAAACCACATGTTGTAAAACTAAATATGCTGCACCAAA AAAAACGGAAGCTGCTAATGGTTCCATGTCTTTTCTATCCACTCTTATAT TGATTCTTATTCCGAAATGTCCCTTATGCTTATCCGCATACATGAGTGCG ATGGTACTTTTTTTTGATATTCAATACACTACCTTAGTCCCAATACTTTT GCATACCAAGCCCGTAATGGGTCTTTTAATAATTACGATGATTCTTTTGA ATAGAAAAGACAAAAGAACACTTATTGCCTTGGCCATTGCTGGAATAGCC TTGACTTTCCTAATTTTAAAAACATATTATAGTATCGCTGTTTTTATGTG GGCTTGGTTTATCTATATCGCTTTTGTCTTCGCAATATGGTATAATGGTA ATTTTCAATATTTTTATAGGTTCATACGCTCTAGAAAAAAAGAAGAGATC GTTTCTTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14504:294..752-

>mRNA_E-siliculosus-1a_F_contig14504.2630.1 ID=mRNA_E-siliculosus-1a_F_contig14504.2630.1|Name=mRNA_E-siliculosus-1a_F_contig14504.2630.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=918bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14504:294..752- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAAATGACGAAAACCACATGTTGTAAAACTAAATATGCTGCACCAAA
AAAAACGGAAGCTGCTAATGGTTCCATGTCTTTTCTATCCACTCTTATAT
TGATTCTTATTCCGAAATGTCCCTTATGCTTATCCGCATACATGAGTGCG
ATGGTACTTTTTTTTGATATTCAATACACTACCTTAGTCCCAATACTTTT
GCATACCAAGCCCGTAATGGGTCTTTTAATAATTACGATGATTCTTTTGA
ATAGAAAAGACAAAAGAACACTTATTGCCTTGGCCATTGCTGGAATAGCC
TTGACTTTCCTAATTTTAAAAACATATTATAGTATCGCTGTTTTTATGTG
GGCTTGGTTTATCTATATCGCTTTTGTCTTCGCAATATGGTATAATGGTA
ATTTTCAATATTTTTATAGGTTCATACGCTCTAGAAAAAAAGAAGAGATC
GTTTCTTAGATGGAAATGACGAAAACCACATGTTGTAAAACTAAATATGC
TGCACCAAAAAAAACGGAAGCTGCTAATGGTTCCATGTCTTTTCTATCCA
CTCTTATATTGATTCTTATTCCGAAATGTCCCTTATGCTTATCCGCATAC
ATGAGTGCGATGGTACTTTTTTTTGATATTCAATACACTACCTTAGTCCC
AATACTTTTGCATACCAAGCCCGTAATGGGTCTTTTAATAATTACGATGA
TTCTTTTGAATAGAAAAGACAAAAGAACACTTATTGCCTTGGCCATTGCT
GGAATAGCCTTGACTTTCCTAATTTTAAAAACATATTATAGTATCGCTGT
TTTTATGTGGGCTTGGTTTATCTATATCGCTTTTGTCTTCGCAATATGGT
ATAATGGTAATTTTCAATATTTTTATAGGTTCATACGCTCTAGAAAAAAA
GAAGAGATCGTTTCTTAG
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