mRNA_E-siliculosus-1a_F_contig14492.2620.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14492.2620.1
Unique NamemRNA_E-siliculosus-1a_F_contig14492.2620.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14492.2620.1 vs. uniprot
Match: A0A6H5JC12_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC12_9PHAE)

HSP 1 Score: 363 bits (932), Expect = 2.340e-117
Identity = 227/272 (83.46%), Postives = 235/272 (86.40%), Query Frame = 1 
Query:    1 GELIIRPSTPASEYGTYALVVAIRFLERSAFDTLVRLVDPRGGYVLLSTFIEEERETPRALGGXXXXXXXXXXXXXXERSPGLPSNRGERGGLAFSDRRDGRAGCAAXXXXXXXXXXXXXXXAVPTVSATPVLETVAVGGGEATTRDPAAEAEERLLKSALPSESRDAPAAGGGSPVQTGVEGAGKEERTPVGKARKKKNKPGXXXXXXXXXXXXATLARWPHSSPRDYKKILRRGELARYFGDRHGFEVLEDSVERLPDGRPVACFLARRV 816
            GELIIRPSTPASEYGTYALVVAIRFLERSAFDTLVRLVDPRGGYVLLSTFIEEERETPRALGG XXXXXXXXXXX  ERSP LPSNRG+R GLAF+DRRDG+AGCAAXXXXXXXXXX     AVPTVSATPV+ T A+GG  A   DP+AEAEERLLKS LP ES DAPAAGG  PV+ G EGAGKEERTPVGKARKK NKPG            ATLARWPHSSPRDYKKILRRGELARYFGDRHGFEVLEDSVERLPDGRPVACFLARR+
Sbjct:  320 GELIIRPSTPASEYGTYALVVAIRFLERSAFDTLVRLVDPRGGYVLLSTFIEEERETPRALGGAXXXXXXXXXXXG-ERSPSLPSNRGDREGLAFTDRRDGKAGCAAXXXXXXXXXXA----AVPTVSATPVVVTAAIGGRGARAGDPSAEAEERLLKSDLPLESCDAPAAGG-RPVRPGAEGAGKEERTPVGKARKK-NKPGSPAAALEAAAAAATLARWPHSSPRDYKKILRRGELARYFGDRHGFEVLEDSVERLPDGRPVACFLARRM 584
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BLAST of mRNA_E-siliculosus-1a_F_contig14492.2620.1 vs. uniprot
Match: D8LJ32_ECTSI (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ32_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 1.060e-110
Identity = 195/272 (71.69%), Postives = 198/272 (72.79%), Query Frame = 1 
Query:    1 GELIIRPSTPASEYGTYALVVAIRFLERSAFDTLVRLVDPRGGYVLLSTFIEEERETPRALGGXXXXXXXXXXXXXXERSPGLPSNRGERGGLAFSDRRDGRAGCAAXXXXXXXXXXXXXXXAVPTVSATPVLETVAVGGGEATTRDPAAEAEERLLKSALPSESRDAPAAGGGSPVQTGVEGAGKEERTPVGKARKKKNKPGXXXXXXXXXXXXATLARWPHSSPRDYKKILRRGELARYFGDRHGFEVLEDSVERLPDGRPVACFLARRV 816
            GE+IIRPSTPASEYGTYALVVAIRFLERSAFDTLVRLVDPRGGYVLLSTFIEEERETPR LGG              ERSP LPSNR  RGGLAFSDRRD                                      GGGEATT +PAAEAEERLLKSALPSESRDAPA GGGS VQ GVEG GKEERTPVGKARKK NKPG            ATLARWPHSSPRDYKKILRRGELARYFGDRHGFEVLEDSVERLPDGRPVACFLARR+
Sbjct:  238 GEMIIRPSTPASEYGTYALVVAIRFLERSAFDTLVRLVDPRGGYVLLSTFIEEERETPRVLGGAVGGGGPGGGLRNGERSPSLPSNREGRGGLAFSDRRD--------------------------------------GGGEATTGNPAAEAEERLLKSALPSESRDAPA-GGGSSVQPGVEGVGKEERTPVGKARKK-NKPGSAAAALEAAAAAATLARWPHSSPRDYKKILRRGELARYFGDRHGFEVLEDSVERLPDGRPVACFLARRM 469
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14492.2620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC12_9PHAE2.340e-11783.46Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
D8LJ32_ECTSI1.060e-11071.69Methyltransf_25 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14492contigE-siliculosus-1a_F_contig14492:119..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size816
Model size816
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927958.9313579-CDS-E-siliculosus-1a_F_contig14492:118..9341622927958.9313579-CDS-E-siliculosus-1a_F_contig14492:118..934Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14492 119..934 +
1696318753.3958247-CDS-E-siliculosus-1a_F_contig14492:118..9341696318753.3958247-CDS-E-siliculosus-1a_F_contig14492:118..934Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14492 119..934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14492.2620.1prot_E-siliculosus-1a_F_contig14492.2620.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14492 119..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14492.2620.1

>prot_E-siliculosus-1a_F_contig14492.2620.1 ID=prot_E-siliculosus-1a_F_contig14492.2620.1|Name=mRNA_E-siliculosus-1a_F_contig14492.2620.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=272bp
GELIIRPSTPASEYGTYALVVAIRFLERSAFDTLVRLVDPRGGYVLLSTF
IEEERETPRALGGAVGGGGPGGGPRNGERSPGLPSNRGERGGLAFSDRRD
GRAGCAAAAAAAADDDDEGVAAAVPTVSATPVLETVAVGGGEATTRDPAA
EAEERLLKSALPSESRDAPAAGGGSPVQTGVEGAGKEERTPVGKARKKKN
KPGSAAAALEAAAAAATLARWPHSSPRDYKKILRRGELARYFGDRHGFEV
LEDSVERLPDGRPVACFLARRV
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mRNA from alignment at E-siliculosus-1a_F_contig14492:119..934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14492.2620.1 ID=mRNA_E-siliculosus-1a_F_contig14492.2620.1|Name=mRNA_E-siliculosus-1a_F_contig14492.2620.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=816bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14492:119..934+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGAGCTGATAATCCGCCCTTCGACACCCGCGTCGGAGTATGGTACGTA
CGCGCTCGTGGTGGCGATACGGTTCTTGGAGCGGAGCGCTTTCGACACCC
TGGTCAGGCTGGTGGACCCCCGCGGCGGTTACGTTCTTCTCTCGACGTTT
ATCGAGGAGGAGAGAGAGACGCCGCGAGCATTAGGCGGTGCCGTCGGTGG
TGGTGGCCCTGGGGGTGGTCCTCGTAACGGGGAGCGATCTCCCGGCTTGC
CTAGCAACCGCGGGGAGAGGGGAGGGCTTGCTTTCTCGGATAGAAGGGAT
GGTCGGGCAGGGTGCGCCGCCGCCGCCGCTGCTGCTGCTGATGATGATGA
TGAGGGTGTCGCTGCCGCCGTGCCCACTGTCAGTGCGACGCCAGTATTGG
AGACGGTCGCGGTAGGTGGGGGGGAGGCAACAACGAGGGACCCCGCAGCA
GAGGCGGAGGAGCGTCTGCTCAAGAGCGCTCTCCCGTCGGAAAGTCGCGA
CGCTCCCGCCGCCGGTGGCGGCAGTCCAGTACAGACGGGCGTGGAGGGGG
CGGGGAAAGAAGAACGCACCCCTGTTGGGAAGGCGAGGAAGAAGAAGAAC
AAGCCGGGGTCCGCGGCTGCGGCCCTAGAGGCCGCCGCCGCCGCCGCCAC
CCTGGCGCGGTGGCCGCACTCGTCACCGAGGGACTACAAGAAGATCCTGA
GGAGGGGGGAGCTGGCGAGGTATTTCGGGGACCGGCATGGGTTCGAGGTG
CTGGAGGATAGCGTTGAGCGCCTACCCGACGGGAGACCCGTGGCGTGCTT
TCTGGCTCGGAGGGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14492:119..934+

>mRNA_E-siliculosus-1a_F_contig14492.2620.1 ID=mRNA_E-siliculosus-1a_F_contig14492.2620.1|Name=mRNA_E-siliculosus-1a_F_contig14492.2620.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1632bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14492:119..934+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGAGCTGATAATCCGCCCTTCGACACCCGCGTCGGAGTATGGTACGTA
CGCGCTCGTGGTGGCGATACGGTTCTTGGAGCGGAGCGCTTTCGACACCC
TGGTCAGGCTGGTGGACCCCCGCGGCGGTTACGTTCTTCTCTCGACGTTT
ATCGAGGAGGAGAGAGAGACGCCGCGAGCATTAGGCGGTGCCGTCGGTGG
TGGTGGCCCTGGGGGTGGTCCTCGTAACGGGGAGCGATCTCCCGGCTTGC
CTAGCAACCGCGGGGAGAGGGGAGGGCTTGCTTTCTCGGATAGAAGGGAT
GGTCGGGCAGGGTGCGCCGCCGCCGCCGCTGCTGCTGCTGATGATGATGA
TGAGGGTGTCGCTGCCGCCGTGCCCACTGTCAGTGCGACGCCAGTATTGG
AGACGGTCGCGGTAGGTGGGGGGGAGGCAACAACGAGGGACCCCGCAGCA
GAGGCGGAGGAGCGTCTGCTCAAGAGCGCTCTCCCGTCGGAAAGTCGCGA
CGCTCCCGCCGCCGGTGGCGGCAGTCCAGTACAGACGGGCGTGGAGGGGG
CGGGGAAAGAAGAACGCACCCCTGTTGGGAAGGCGAGGAAGAAGAAGAAC
AAGCCGGGGTCCGCGGCTGCGGCCCTAGAGGCCGCCGCCGCCGCCGCCAC
CCTGGCGCGGTGGCCGCACTCGTCACCGAGGGACTACAAGAAGATCCTGA
GGAGGGGGGAGCTGGCGAGGTATTTCGGGGACCGGCATGGGTTCGAGGTG
CTGGAGGATAGCGTTGAGCGCCTACCCGACGGGAGACCCGTGGCGTGCTT
TCTGGCTCGGAGGGTGGGAGAGCTGATAATCCGCCCTTCGACACCCGCGT
CGGAGTATGGTACGTACGCGCTCGTGGTGGCGATACGGTTCTTGGAGCGG
AGCGCTTTCGACACCCTGGTCAGGCTGGTGGACCCCCGCGGCGGTTACGT
TCTTCTCTCGACGTTTATCGAGGAGGAGAGAGAGACGCCGCGAGCATTAG
GCGGTGCCGTCGGTGGTGGTGGCCCTGGGGGTGGTCCTCGTAACGGGGAG
CGATCTCCCGGCTTGCCTAGCAACCGCGGGGAGAGGGGAGGGCTTGCTTT
CTCGGATAGAAGGGATGGTCGGGCAGGGTGCGCCGCCGCCGCCGCTGCTG
CTGCTGATGATGATGATGAGGGTGTCGCTGCCGCCGTGCCCACTGTCAGT
GCGACGCCAGTATTGGAGACGGTCGCGGTAGGTGGGGGGGAGGCAACAAC
GAGGGACCCCGCAGCAGAGGCGGAGGAGCGTCTGCTCAAGAGCGCTCTCC
CGTCGGAAAGTCGCGACGCTCCCGCCGCCGGTGGCGGCAGTCCAGTACAG
ACGGGCGTGGAGGGGGCGGGGAAAGAAGAACGCACCCCTGTTGGGAAGGC
GAGGAAGAAGAAGAACAAGCCGGGGTCCGCGGCTGCGGCCCTAGAGGCCG
CCGCCGCCGCCGCCACCCTGGCGCGGTGGCCGCACTCGTCACCGAGGGAC
TACAAGAAGATCCTGAGGAGGGGGGAGCTGGCGAGGTATTTCGGGGACCG
GCATGGGTTCGAGGTGCTGGAGGATAGCGTTGAGCGCCTACCCGACGGGA
GACCCGTGGCGTGCTTTCTGGCTCGGAGGGTG
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