mRNA_E-siliculosus-1a_F_contig1445.2604.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Match: D8LSB9_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB9_ECTSI) HSP 1 Score: 1455 bits (3767), Expect = 0.000e+0 Identity = 755/830 (90.96%), Postives = 767/830 (92.41%), Query Frame = 1
Query: 589 FEVTYGEAPSHEAEAVIVGLKPGKAYQFLVASISAERMLVPGSSIVSDPVQLPEAEYEKAWFFEGGEDDIKWTAFEGLGPENVGAAGGXXXXXXXXSTALDDIRCSPSPTRCFTGLRSLCLVVPAGLAGGAYVDTPVKEGWLYVVKAKVFHEEEGGRAGNGAGAEAEGAGRKGSRLAMMTGWTAGRKGSKSTVTTRLVLWDMRDGKEMSAPAVKTGEWEALECQIVPFRSEHLRVAIQSGGEGRGSNIYVDSVELFHGGPTPAERAISAAVDLMDEPRPMPSKVLVRVESARDVRAADTLGTSDPFVKVFVRNAEVHRTKVIPMTLSPVWDETFFLSPETPGGGDAKAPGLNADGDGVRFEMWDHDLHGQGDYLGEVCLTSDTLKVAPPHRVEHKAVKDPVRGAGDSGDRTATEVVIPKLKPARTKRGGHRGRGXXXXXXXXXVPPPTILALAIQVSWPKDPESAEGKLVRTLQNENGLLSTRVNALK--------ELSMAALRAPRNIEDAAKAKIVLLRSRAAEAAVWVLADPNFLEDACHLLIGLVQLGHDAGHSEAGFGLCRKLRLFVLQLSPAVVAVRCLRASVGPPEILLELLAKLYVGQQAALHEDVVNIRGFFYSLVLHIDTSAPAQALVREISGGARELPDGLVALFRRYRTRIPPLPGLWRSTMLQKLSAEEAHPPDLEGDDLEANEDDHDLNLASRGGNREGEPSLPDRIRAHLTVALMAVPPLIKAVVGGRRVGTPGSCEQPVGTVLVLDGLVLMCVVFGGGCFRINRRRFSALAGTWLFPTLFLAFLLHLGLVTGLLVSLARVDSVEAGGGHGEDDG 3054
F+VTYGEAPSHEAEAVIVGLKPGKAYQFLVASISAERMLVPGSSIVSDPVQLPEAEYEKAWFFEGGEDDIKW AFEGLGPENVGAAGGXXXXXXXXSTALDDIRCSPSPTRCFTGLRSLCLVVPAGLAGGAYVDTPVKEGWLYVVKAKVFHEEEGG G+GAGAEAEGAGRKGSRLAMMTGWTAGRKGSKS VTTRLVLWDMRDGKEMSAPAVKTGEWEALECQIVPFRSEHLRVAIQSGGEGR SNIYVD+VELFHGGPTPAERAISAAVDLMDEPRPMPSKV FV NAEVHRTKVIPMTLSPVWDETFFLSPETPGGGDA APGLNADGDG+RFEMWDHDLHGQGDYLGEVCLTSD LKVAPPHRVEH+AVKDP+RGAGDSGDRTATEVVIPKLKPARTKRGGHRGRG VPPPTILALAIQVSWPKDPESAEGKLVR LQ+E GLLS RVNALK ELSMAALRAPRNIEDAAKAKI+LLRSRAAEAAVWVLADPNFLEDAC LLIGLVQLGHDAGHSEAGFGLCR+LRLFVLQLSPAVVAVRCLRASVGPPEILLELLAKLYVGQQAALHEDVVNIRGFFYSLVLHIDTSAPAQALVR+ISGGARELPDGLVA+FRRYRTRIPPLPGLWR TMLQKLSAEEAHPPDLEGDDLEANEDDHDLN ASRGGNRE EPSLPDRIRAHLTVALMAVPPL KAVVGGRR+G PGSCEQPVGTVLVLDGLVLMC VFGGGCFRINRRRFSALAGTWLFPTLFLAFLLHLGLV GLLVSLARVDSVEAG G GEDDG
Sbjct: 13 FKVTYGEAPSHEAEAVIVGLKPGKAYQFLVASISAERMLVPGSSIVSDPVQLPEAEYEKAWFFEGGEDDIKWAAFEGLGPENVGAAGGXXXXXXXXSTALDDIRCSPSPTRCFTGLRSLCLVVPAGLAGGAYVDTPVKEGWLYVVKAKVFHEEEGGGVGDGAGAEAEGAGRKGSRLAMMTGWTAGRKGSKSNVTTRLVLWDMRDGKEMSAPAVKTGEWEALECQIVPFRSEHLRVAIQSGGEGRESNIYVDAVELFHGGPTPAERAISAAVDLMDEPRPMPSKV-------------------------FVGNAEVHRTKVIPMTLSPVWDETFFLSPETPGGGDANAPGLNADGDGIRFEMWDHDLHGQGDYLGEVCLTSDALKVAPPHRVEHEAVKDPIRGAGDSGDRTATEVVIPKLKPARTKRGGHRGRGGMGA-----VPPPTILALAIQVSWPKDPESAEGKLVRILQDEQGLLSARVNALKRILPTLLQELSMAALRAPRNIEDAAKAKILLLRSRAAEAAVWVLADPNFLEDACRLLIGLVQLGHDAGHSEAGFGLCRRLRLFVLQLSPAVVAVRCLRASVGPPEILLELLAKLYVGQQAALHEDVVNIRGFFYSLVLHIDTSAPAQALVRDISGGARELPDGLVAMFRRYRTRIPPLPGLWRPTMLQKLSAEEAHPPDLEGDDLEANEDDHDLNPASRGGNREEEPSLPDRIRAHLTVALMAVPPLFKAVVGGRRIGAPGSCEQPVGTVLVLDGLVLMCAVFGGGCFRINRRRFSALAGTWLFPTLFLAFLLHLGLVAGLLVSLARVDSVEAGSGQGEDDG 812
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Match: A0A6H5L382_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L382_9PHAE) HSP 1 Score: 651 bits (1679), Expect = 9.710e-224 Identity = 342/409 (83.62%), Postives = 348/409 (85.09%), Query Frame = 1
Query: 2062 MAALRAPRNIEDAAKAKIVLLRSRAAEAAVWVLADPNFLEDACHLLIGLVQLGHDAGHSEAGFGLCRKLRLFVLQLSPAVVAVRCLRASVGPPEILLELLAKLYVGQQAALHEDVVNIRGFFYSLVLHIDTSAPAQALVREISGGARELPDGLVALFRRYRTRIPPLPGLWRSTMLQKLSAEEAHPPDLEGDDLEANEDDHDLNLASRGGNREGEPSLPDRIRAHLTVALMAVPPLIKAVVGGRRVGTPGSCEQPVGTVLVLDGLVLMCVVFGGGCFRINRRRFSALAGTWLFPTLFLAFLLHLGLVTGLLVSLARVDSVEAGGGHGEDDGKVTCSSGTFAWGVLFLVLDLLLLVAPPVWWCVRCYDRATRSVPAVAATSVLVVPDERPATDAKPVASVGGDNDAGQAI 3288
MAALRAPRNIEDAAKAKI+LLRSRAAEAAVWVLADPNFLEDAC LLIGL ILLE LAKLYVGQQAALHEDVVNIRGFFYSLVLHIDTSAPAQALVREISGGARELPDGLVALF RYRTRIPPLPGLWRSTMLQK+SAEEAHPPDLEGDDLEANEDDHDLN ASRGG REGEPSLPDRIRAHLTVALMA+PPL KAV GGRRVG PGSCEQPVGTVLVLDGLVLMC VFGGGCFRINR RFS LAGTWLFPTL LAFLLHLGLV GLLVSLARVDSVEAGGG G+DDGKVTCSSGTFAWGV+FLVLDLLLLVAPPVWWC RCYDRATRSVPAVAATSVLVVPDERPATDAKPVASVGGD+DA QAI
Sbjct: 1 MAALRAPRNIEDAAKAKILLLRSRAAEAAVWVLADPNFLEDACRLLIGL---------------------------------------------ILLEFLAKLYVGQQAALHEDVVNIRGFFYSLVLHIDTSAPAQALVREISGGARELPDGLVALFHRYRTRIPPLPGLWRSTMLQKISAEEAHPPDLEGDDLEANEDDHDLNPASRGGTREGEPSLPDRIRAHLTVALMAMPPLFKAVAGGRRVGAPGSCEQPVGTVLVLDGLVLMCAVFGGGCFRINRHRFSILAGTWLFPTLLLAFLLHLGLVAGLLVSLARVDSVEAGGGQGKDDGKVTCSSGTFAWGVMFLVLDLLLLVAPPVWWCARCYDRATRSVPAVAATSVLVVPDERPATDAKPVASVGGDDDADQAI 364
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Match: A0A835Z918_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z918_9STRA) HSP 1 Score: 174 bits (442), Expect = 1.970e-40 Identity = 129/401 (32.17%), Postives = 180/401 (44.89%), Query Frame = 1
Query: 487 DISTTSVRVTWPKVSDKKYPV---------------------YTYRVCTAEVGSG--FEVTYGEAPSHEAEAVIVGLKPGKAYQFLVASISAERMLVPGSSIVSDPVQLPEAEYEKAWFFEGGEDDIKWTAFEG---LGPENVGAAGGXXXXXXXXSTALDDIRCSPSPTRCFTGLRSLCLVVPAGL---AGGAYVDTPVKEGWLYVVKAKVFHEEEGGRAGNGAGAEAEGAGRKGSRLAMMTGWTAGRKGSKSTVTTRLVLWDMRDGKEMSAPAVKTGEWEALECQIVPFRSEHLRVAIQSGGE-GRGS-NIYVDSVELFHGGPTPAERAISAAVDLMDEPRPMPSKVLVRVESARDVRAADTLGTSDPFVKVFVRNAEVHRTKVIPMTLSPVWDETFFL 1596
D++TT++R+ WP + + PV + Y + + VGSG F + AVI LK Y+F +A++S E M++PGSS+VS P+ LPE +YE AWFFE DD++W A+EG + + GA S D + RCFTGLRS+ + VPAG GG ++DTPV +G YV A V S AV + +WE L C+I S LR+A+ + GS Y+D+VEL GPT E A +A + PS + V V A +RAAD +G SDP+V V+ E+ +T+V+PMTL+P WDETF L
Sbjct: 709 DVTTTALRLGWPVPNVARCPVCCATIVSGKSCLLLVEGRSVIHGYCISSDIVGSGQGFHTLIKHTGTTATSAVIAALKQRLTYRFHIAALSDEGMVIPGSSVVSAPIALPEPKYEAAWFFESTADDVQWRAYEGDALVADQQDGALA---------SMEGDAVEAEMKKERCFTGLRSMRVAVPAGCDGGCGGIFIDTPVTDGRRYVCSAMV-----------------------------------------------------------STGAVLSEQWEQLTCEITIQHSHTLRIAVATMPPVPPGSCTFYLDAVELVQAGPTDFELAAAALDAAVHCSWSSPSSLTVTVAGASSLRAADVMGASDPYVCVYWCGKEIGQTQVMPMTLTPRWDETFVL 1041
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Match: A0A1Y1HWN3_KLENI (Calcium-dependent lipid-binding protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWN3_KLENI) HSP 1 Score: 80.9 bits (198), Expect = 6.730e-12 Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
Query: 1444 VRVESARDVRAADTLGTSDPFVKVFVRNAEVHR-TKVIPMTLSPVWDETFFLSPETPGGGDAKAPGLNADGDGVRFEMWDHDLHGQGDYLGEVCLT 1728
V V A ++RAAD GTSDPFV+VF+RN ++ + TKVIP TL+PVWD+TF E +A D ++ E+WDHD G+ D+LG V +T
Sbjct: 435 VTVRKAEELRAADMGGTSDPFVRVFMRNGDMKKKTKVIPKTLNPVWDQTFEFLVE------------DAARDMLQLEVWDHDTFGK-DFLGRVSIT 517
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Match: F7BI79_ORNAN (RAS protein activator like 1 n=4 Tax=Monotremata TaxID=9255 RepID=F7BI79_ORNAN) HSP 1 Score: 73.2 bits (178), Expect = 2.380e-9 Identity = 48/124 (38.71%), Postives = 65/124 (52.42%), Query Frame = 1
Query: 1387 ISAAVDLMDEPRPMPSKVLVRVESARDVRAADTLGTSDPFVKVFVRNAEVHRTKVIPMTLSPVWDETFFLSPETPGGGDAKAPGLNADGDGVRFEMWDHDLHGQGDYLGEVCLTSDTLKVAPPH 1758
I AV L++EP+ K+ V ARD+ D GTSDPF ++F N V T VI T P WDE L + G A G +R E+WD DL G+ D+LG+V T + L+ +PP+
Sbjct: 120 IHLAVHLLEEPQG--KKLRCHVIEARDLAPRDISGTSDPFARLFYGNQSVE-TAVIKKTRFPHWDEVLEL----------ELWGEEAVGAHLRLEVWDWDLVGRNDFLGQVEFTPEVLQHSPPN 230
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Match: A0A7S2SJY7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJY7_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 3.720e-9 Identity = 40/104 (38.46%), Postives = 53/104 (50.96%), Query Frame = 1
Query: 1474 AADTLGTSDPFVKVFVRNAEVHRTKVIPMTLSPVWDETFFLSPETPGGGDAKAPGLNADGDGVRFEMWDHDLHGQGDYLGEVCLTSDTLKVAPPHRVEHKAVKD 1785
AAD GTSDP+ V EV RT VI TL+P W + FL P L+++ +R E++DHDL G D+LG+V LT D L P + +D
Sbjct: 2 AADITGTSDPYCVVHWNGQEVGRTSVIQRTLNPNWSDATFLLP-------VDQELLDSE---LRIEVFDHDLVGDDDFLGQVVLTGDKLSHPNPDKASEALQRD 95
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Match: A0A7S0XTH7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XTH7_HEMAN) HSP 1 Score: 60.1 bits (144), Expect = 1.400e-6 Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 1
Query: 1438 VLVRVESARDVRAADTLGTSDPFVKVFVRNAEVHRTKVIPMTLSPVWDETFFLSPETPGGGDAKAPGLNADGDGVRFEMWDHDLHGQGDYLGEVCLTSDTLKV 1746
V+ + A ++ AAD+ GTSDPFV V + E T+ + TL+P+WD T L E P D D V ++WD+D G D+LG ++ + LK+
Sbjct: 44 VVANIVEASNIAAADSTGTSDPFVIVKIGTNE-KMTECVRETLNPIWDCTIQL--EVP-----------YDADSVEVQIWDNDAWGDNDFLGLASVSINKLKI 132
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Match: A0A1Y1I052_KLENI (Synaptotagmin family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I052_KLENI) HSP 1 Score: 63.2 bits (152), Expect = 3.190e-6 Identity = 51/155 (32.90%), Postives = 81/155 (52.26%), Query Frame = 1
Query: 1387 ISAAVDLMDEPRPMPSKVLVRVESARDVRAADTLGTSDPFVKVFV--RNAEVHRTKVIPMTLSPVWDETFFLSPETPGGGDAKAPGLNADGDGVRFE-------MWDHDLHGQGDYLGEVC--LTSDTLKVAPPH-------RVEHKAVKDPVRG 1797
+S+ DL+D+ + VRV AR + AAD+ GTSDP+VK+ V R+A+ T+VI L+P W+E F + KAPG +D + + E +WD D D+LG++ L S ++V P ++E +++KD V+G
Sbjct: 333 VSSPFDLVDQVE----YLFVRVLRARALLAADSNGTSDPYVKIHVGPRSAQ---TRVIKHELNPEWNEVFAFN---------KAPGSGSDQNHIDRETGVLELSVWDEDFLTADDFLGQIQIPLHSVPMRVYPEKGVDPQWFKLERRSLKDAVKG 471
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Match: UPI0006AAB3FD (synaptotagmin-4-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AAB3FD) HSP 1 Score: 60.1 bits (144), Expect = 3.340e-6 Identity = 40/120 (33.33%), Postives = 64/120 (53.33%), Query Frame = 1
Query: 1390 SAAVDLMDEPRPMPSKVLVR------VESARDVRAADTLGTSDPFVKVFVRNAEVH-RTKVIPMTLSPVWDETFFLSPETPGGGDAKAPGLNADGDGVRFEMWDHDLHGQGDYLGEVCLT 1728
S A D+ P + V+VR V +A D+ A D +G +DPFV + ++ +E +T+V+P +L+PVW++TF E +A D + E+WDHD G+ D +G V +T
Sbjct: 77 SDATDVKSSQSPKKTDVIVRGVLSVTVVAAEDLPAVDFMGKADPFVVITLKKSEAKSKTRVVPDSLNPVWNQTFDFVVE------------DALHDLLILEVWDHDKFGK-DKIGRVIMT 183
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Match: A0A6H5KLV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV8_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 3.900e-6 Identity = 37/92 (40.22%), Postives = 50/92 (54.35%), Query Frame = 1
Query: 1450 VESARDVRAADTLGTSDPFVKVFVRNAEVHRTKVIPMTLSPVWDETFFLSPETPGGGDAKAPGLNADGDGVRFEMWDHDLHGQGDYLGEVCL 1725
++ A+ R D GTSDPF V+V T+V TL+P WD+ + E G G A A GL G +R E+WD D+ G D++GEV L
Sbjct: 4042 LQGAQLRRGLDVSGTSDPFCTVYVDRVWFAETRVCWGTLAPRWDQQIEI--EVFGRGGAPAQGLGLVGHEIRVEVWDKDVVGANDFIGEVHL 4131 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1445.2604.1 >prot_E-siliculosus-1a_F_contig1445.2604.1 ID=prot_E-siliculosus-1a_F_contig1445.2604.1|Name=mRNA_E-siliculosus-1a_F_contig1445.2604.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1094bp MTHTGRVGQEEGQLSEETNSGAPTSHGLSNPVSEDEITSNGGHDRHNKLPback to top mRNA from alignment at E-siliculosus-1a_F_contig1445:20331..28247+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1445.2604.1 ID=mRNA_E-siliculosus-1a_F_contig1445.2604.1|Name=mRNA_E-siliculosus-1a_F_contig1445.2604.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7917bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1445:20331..28247+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1445:20331..28247+ >mRNA_E-siliculosus-1a_F_contig1445.2604.1 ID=mRNA_E-siliculosus-1a_F_contig1445.2604.1|Name=mRNA_E-siliculosus-1a_F_contig1445.2604.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1445:20331..28247+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |