mRNA_E-siliculosus-1a_F_contig14449.2601.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14449.2601.1
Unique NamemRNA_E-siliculosus-1a_F_contig14449.2601.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14449.2601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14449contigE-siliculosus-1a_F_contig14449:54..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size123
Model size429
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927955.034307-UTR-E-siliculosus-1a_F_contig14449:53..3591622927955.034307-UTR-E-siliculosus-1a_F_contig14449:53..359Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14449 54..359 +
1696318752.047928-UTR-E-siliculosus-1a_F_contig14449:53..3591696318752.047928-UTR-E-siliculosus-1a_F_contig14449:53..359Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14449 54..359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927955.0527081-CDS-E-siliculosus-1a_F_contig14449:359..4821622927955.0527081-CDS-E-siliculosus-1a_F_contig14449:359..482Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14449 360..482 +
1696318752.0602102-CDS-E-siliculosus-1a_F_contig14449:359..4821696318752.0602102-CDS-E-siliculosus-1a_F_contig14449:359..482Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14449 360..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14449.2601.1prot_E-siliculosus-1a_F_contig14449.2601.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14449 360..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14449.2601.1

>prot_E-siliculosus-1a_F_contig14449.2601.1 ID=prot_E-siliculosus-1a_F_contig14449.2601.1|Name=mRNA_E-siliculosus-1a_F_contig14449.2601.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=41bp
MRARWKREIDAVDKCHDRECCDDKTLIAVATAKHPPPPTTA
back to top

mRNA from alignment at E-siliculosus-1a_F_contig14449:54..482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14449.2601.1 ID=mRNA_E-siliculosus-1a_F_contig14449.2601.1|Name=mRNA_E-siliculosus-1a_F_contig14449.2601.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=429bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14449:54..482+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAACAGGTATTTGCACTCGTCCTCCCGTGTGCGTTTACGATTCATTCAGC
AGTGTTTTCGAGTACCGACGCTGTCCGTAGTGTGCTAGAAGCGAAAACAT
ATGCTAACATATTTGCTTGTGATGGGTTCAGGTCTGTTTGCCCTCCTGCG
CTGAGAGTGCCAACCTCACAACGCATTAGCGCCGGCCTAGAGCTGGCCGT
GCATTTGAGACTTTGCTGACACCGACGATTGACGGATAACGGCTTTGAAC
TTACCTCCCCGCCTTCTCCCCACCCACACCCTGTCGACCTGCCACCTTCT
CGTATAATGCGTGCCAGATGGAAGAGGGAGATCGATGCCGTAGACAAATG
CCACGACCGAGAGTGTTGCGACGACAAGACACTCATCGCGGTTGCGACCG
CAAAACACCCGCCGCCACCCACCACGGCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14449:54..482+

>mRNA_E-siliculosus-1a_F_contig14449.2601.1 ID=mRNA_E-siliculosus-1a_F_contig14449.2601.1|Name=mRNA_E-siliculosus-1a_F_contig14449.2601.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=246bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14449:54..482+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGTGCCAGATGGAAGAGGGAGATCGATGCCGTAGACAAATGCCACGA
CCGAGAGTGTTGCGACGACAAGACACTCATCGCGGTTGCGACCGCAAAAC
ACCCGCCGCCACCCACCACGGCGATGCGTGCCAGATGGAAGAGGGAGATC
GATGCCGTAGACAAATGCCACGACCGAGAGTGTTGCGACGACAAGACACT
CATCGCGGTTGCGACCGCAAAACACCCGCCGCCACCCACCACGGCG
back to top