mRNA_E-siliculosus-1a_F_contig14446.2600.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14446.2600.1
Unique NamemRNA_E-siliculosus-1a_F_contig14446.2600.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Match: D8LS10_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS10_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 3.350e-42
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    4 SAIWCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMGRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 222
            S +W NLDPCGLICAVITYGLVAYAQYAVTVCVVGQW+GRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV
Sbjct:   12 SPVWGNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWLGRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 84
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BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Match: A0A1V9ZXN1_9STRA (Palmitoyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXN1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.820e-20
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 RSAIWCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMGRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 222
            RS+IW N D CGL+CA I++ L+AYA+Y V   V+  WMG SFFGV+H   F+LL  LA  SH +AM+TDPG+V
Sbjct:   19 RSSIWLNWDCCGLVCAAISWFLIAYAEYVVVGIVLFPWMGTSFFGVLHTCIFSLLCFLALVSHGKAMMTDPGSV 92
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BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Match: A0A8K1FM35_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM35_PYTOL)

HSP 1 Score: 89.7 bits (221), Expect = 9.990e-20
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 RSAIWCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMGRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 222
            R  +WCNLDPCG+ICAVI++ L+ YA+  V   +V  WMG S  G+ H+ AF +L  LA  SH +AMLTDPGAV
Sbjct:   16 RVRLWCNLDPCGIICAVISWFLILYAELVVVGVIVYPWMGLSLVGLFHMTAFTVLCFLALVSHGKAMLTDPGAV 89
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BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Match: A0A418AV50_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AV50_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.240e-19
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 RSAIWCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMGRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 222
            R+ +WCN D CG++CAVI++ LV YA+Y V   V+  WMG  FFG++H+  F  +  LA  SH +AMLTDPG+V
Sbjct:   17 RAKVWCNWDACGIVCAVISWFLVLYAEYVVVGVVIYPWMGLGFFGLLHICLFTTVCFLALVSHGKAMLTDPGSV 90
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BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Match: A0A024U2B0_9STRA (Palmitoyltransferase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2B0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.700e-19
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 RSAIWCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMGRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 222
            R+ +WCN D CG++CAVI++ LV YA+Y V   V+  WMG  FFG++H+  F  +  LA  SH +AMLTDPG+V
Sbjct:   17 RAKVWCNWDACGIVCAVISWFLVLYAEYVVVGVVIYPWMGLGFFGLLHICLFTTVCFLALVSHGKAMLTDPGSV 90
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Match: A0A2D4BYI4_PYTIN (Palmitoyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYI4_PYTIN)

HSP 1 Score: 85.9 bits (211), Expect = 1.920e-18
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:   13 WCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMGRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 222
            WCN DPCGLICA +++ LV YA+  V   VV  WMG S  G++H+ AF+ LA +A  SH +AMLTDPGAV
Sbjct:   19 WCNRDPCGLICAALSWFLVLYAETVVVGVVVYPWMGLSLMGLLHITAFSSLAFMALVSHGKAMLTDPGAV 88
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BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Match: W7TVR7_9STRA (Palmitoyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVR7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.070e-18
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   13 WCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMG-RSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 222
            WCN DPCG++CA +T+ L+ YAQY +   V+  WMG  S +G ++V AFN  ACLA  SH RAM TDPGAV
Sbjct:   23 WCNQDPCGVVCAGVTWSLILYAQYTINKIVIFGWMGVLSLWGFLNVTAFNATACLAIISHVRAMTTDPGAV 93
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BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Match: A0A0W8DQN1_PHYNI (Lysine-specific demethylase 4A n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DQN1_PHYNI)

HSP 1 Score: 83.2 bits (204), Expect = 7.350e-18
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   10 IWCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMGRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 222
            +WCN DPCG++CA+I++ LV YA+  V   VV  WMG S  G++H+V F  L  LA  SH +AM+TDPGAV
Sbjct:   21 LWCNTDPCGIVCAIISWFLVLYAECTVVGVVVYPWMGLSPLGLLHIVIFTGLCFLALVSHGKAMMTDPGAV 91
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Match: A0A662X9G3_9STRA (Palmitoyltransferase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9G3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.040e-17
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 RSAIWCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMGRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 222
             + +WCN DPCGL+CAVI++ LV YA+  V   V+  WMG S  G++H   F  L  LA  SH +AMLTDPGAV
Sbjct:   18 NARLWCNKDPCGLVCAVISWFLVLYAECTVVGVVIYPWMGLSPLGLLHTAIFTGLCFLALVSHGKAMLTDPGAV 91
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Match: W2J958_PHYPR (Palmitoyltransferase n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2J958_PHYPR)

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-17
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   10 IWCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMGRSFFGVIHVVAFNLLACLAHASHARAMLTDPGAV 222
            +WCN DPCG++CA+I++ LV YA+  V   VV  WMG S  G++H+V F  L  LA  SH +AM+TDPGAV
Sbjct:   21 LWCNTDPCGIVCAIISWFLVLYAECTVVGVVVYPWMGLSPLGLLHIVIFTGLCFLALVSHGKAMMTDPGAV 91
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14446.2600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS10_ECTSI3.350e-4294.52Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A1V9ZXN1_9STRA3.820e-2056.76Palmitoyltransferase n=1 Tax=Thraustotheca clavata... [more]
A0A8K1FM35_PYTOL9.990e-2055.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A418AV50_9STRA1.240e-1951.35Palmitoyltransferase n=1 Tax=Aphanomyces invadans ... [more]
A0A024U2B0_9STRA2.700e-1951.35Palmitoyltransferase n=2 Tax=Aphanomyces invadans ... [more]
A0A2D4BYI4_PYTIN1.920e-1857.14Palmitoyltransferase n=1 Tax=Pythium insidiosum Ta... [more]
W7TVR7_9STRA3.070e-1856.34Palmitoyltransferase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A0W8DQN1_PHYNI7.350e-1853.52Lysine-specific demethylase 4A n=1 Tax=Phytophthor... [more]
A0A662X9G3_9STRA1.040e-1752.70Palmitoyltransferase n=1 Tax=Nothophytophthora sp.... [more]
W2J958_PHYPR1.100e-1753.52Palmitoyltransferase n=6 Tax=Phytophthora parasiti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14446contigE-siliculosus-1a_F_contig14446:863..1084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size222
Model size222
Exons1
Hectar predicted targeting categorysignal anchor
BRITEko00000,ko01000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.Z
EC2.3.1.225
EggNOG OGsCOG5273@1,KOG1311@2759
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
GOsGO:0000139,GO:0001750,GO:0001942,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0005929,GO:0006464,GO:0006497,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009058,GO:0009059,GO:0009888,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016409,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018198,GO:0018230,GO:0018231,GO:0018345,GO:0019222,GO:0019538,GO:0019706,GO:0019707,GO:0022404,GO:0022405,GO:0031090,GO:0031253,GO:0031984,GO:0032501,GO:0032502,GO:0032768,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042303,GO:0042622,GO:0042633,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043588,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0046907,GO:0048513,GO:0048731,GO:0048732,GO:0048733,GO:0048856,GO:0050789,GO:0050790,GO:0050999,GO:0051179,GO:0051234,GO:0051341,GO:0051641,GO:0051649,GO:0051668,GO:0060170,GO:0060429,GO:0061512,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0097458,GO:0097499,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098590,GO:0098773,GO:0098791,GO:0120025,GO:0120038,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1903546
KEGG TC9.B.37.2
KEGG koko:K18932,ko:K20028,ko:K20029
Preferred nameZDHHC21
Seed eggNOG ortholog2880.D8LS10
Seed ortholog evalue3.5e-32
Seed ortholog score143.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927954.9972613-CDS-E-siliculosus-1a_F_contig14446:862..10841622927954.9972613-CDS-E-siliculosus-1a_F_contig14446:862..1084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14446 863..1084 -
1696318752.032123-CDS-E-siliculosus-1a_F_contig14446:862..10841696318752.032123-CDS-E-siliculosus-1a_F_contig14446:862..1084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14446 863..1084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14446.2600.1prot_E-siliculosus-1a_F_contig14446.2600.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14446 863..1084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14446.2600.1

>prot_E-siliculosus-1a_F_contig14446.2600.1 ID=prot_E-siliculosus-1a_F_contig14446.2600.1|Name=mRNA_E-siliculosus-1a_F_contig14446.2600.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=74bp
RSAIWCNLDPCGLICAVITYGLVAYAQYAVTVCVVGQWMGRSFFGVIHVV
AFNLLACLAHASHARAMLTDPGAV
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mRNA from alignment at E-siliculosus-1a_F_contig14446:863..1084-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14446.2600.1 ID=mRNA_E-siliculosus-1a_F_contig14446.2600.1|Name=mRNA_E-siliculosus-1a_F_contig14446.2600.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=222bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14446:863..1084- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGTCCGCCATCTGGTGTAACCTGGACCCTTGCGGCCTGATCTGCGCGGT
CATCACGTACGGCCTCGTGGCCTACGCCCAGTACGCGGTGACGGTGTGCG
TGGTCGGGCAGTGGATGGGGCGATCCTTTTTCGGGGTGATCCACGTGGTG
GCCTTCAACCTGCTCGCCTGCCTCGCCCACGCTTCGCACGCGAGGGCCAT
GCTGACGGATCCGGGAGCCGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14446:863..1084-

>mRNA_E-siliculosus-1a_F_contig14446.2600.1 ID=mRNA_E-siliculosus-1a_F_contig14446.2600.1|Name=mRNA_E-siliculosus-1a_F_contig14446.2600.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14446:863..1084- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGTCCGCCATCTGGTGTAACCTGGACCCTTGCGGCCTGATCTGCGCGGT
CATCACGTACGGCCTCGTGGCCTACGCCCAGTACGCGGTGACGGTGTGCG
TGGTCGGGCAGTGGATGGGGCGATCCTTTTTCGGGGTGATCCACGTGGTG
GCCTTCAACCTGCTCGCCTGCCTCGCCCACGCTTCGCACGCGAGGGCCAT
GCTGACGGATCCGGGAGCCGTGAGGTCCGCCATCTGGTGTAACCTGGACC
CTTGCGGCCTGATCTGCGCGGTCATCACGTACGGCCTCGTGGCCTACGCC
CAGTACGCGGTGACGGTGTGCGTGGTCGGGCAGTGGATGGGGCGATCCTT
TTTCGGGGTGATCCACGTGGTGGCCTTCAACCTGCTCGCCTGCCTCGCCC
ACGCTTCGCACGCGAGGGCCATGCTGACGGATCCGGGAGCCGTG
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