mRNA_E-siliculosus-1a_F_contig1443.2592.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1443.2592.1
Unique NamemRNA_E-siliculosus-1a_F_contig1443.2592.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1443.2592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1443contigE-siliculosus-1a_F_contig1443:24210..24945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size465
Model size736
Exons1
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1443.2592.1prot_E-siliculosus-1a_F_contig1443.2592.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1443 24328..24792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927953.5722284-UTR-E-siliculosus-1a_F_contig1443:24209..243271622927953.5722284-UTR-E-siliculosus-1a_F_contig1443:24209..24327Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1443 24210..24327 +
1696318751.7326493-UTR-E-siliculosus-1a_F_contig1443:24209..243271696318751.7326493-UTR-E-siliculosus-1a_F_contig1443:24209..24327Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1443 24210..24327 +
1622927953.5989566-UTR-E-siliculosus-1a_F_contig1443:24792..249451622927953.5989566-UTR-E-siliculosus-1a_F_contig1443:24792..24945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1443 24793..24945 +
1696318751.7519832-UTR-E-siliculosus-1a_F_contig1443:24792..249451696318751.7519832-UTR-E-siliculosus-1a_F_contig1443:24792..24945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1443 24793..24945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927953.5872965-CDS-E-siliculosus-1a_F_contig1443:24327..247921622927953.5872965-CDS-E-siliculosus-1a_F_contig1443:24327..24792Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1443 24328..24792 +
1696318751.7425418-CDS-E-siliculosus-1a_F_contig1443:24327..247921696318751.7425418-CDS-E-siliculosus-1a_F_contig1443:24327..24792Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1443 24328..24792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1443.2592.1

>prot_E-siliculosus-1a_F_contig1443.2592.1 ID=prot_E-siliculosus-1a_F_contig1443.2592.1|Name=mRNA_E-siliculosus-1a_F_contig1443.2592.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=155bp
MYLVSTNFIPDKYYPSPKNVVCSQQVSTYQTKIYILSILSPSTKVHFSRG
RFGVGCCSETKNTNKRLVSRRRSLFSIFVFFAVSLVLNMLLILSAFVGCW
PISNTSTSLDRSCMGMVRGWKQEVGQGRRGLQHGNSAKTQPVAEIRQMGP
ISRL*
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mRNA from alignment at E-siliculosus-1a_F_contig1443:24210..24945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1443.2592.1 ID=mRNA_E-siliculosus-1a_F_contig1443.2592.1|Name=mRNA_E-siliculosus-1a_F_contig1443.2592.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=736bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1443:24210..24945+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTGATCGGGGTGCTTCCAAAAACAATTCTGGTGAGTGCAGGTACAGAAA
TATGAAACAATGCCATTTCTGCTCTTGAATCGTTTCCGTGTGTCCTATGG
GCTTGTCTGGCACGCGAAATGTATTTAGTTTCGACCAATTTTATTCCCGA
CAAGTACTACCCGTCACCCAAGAACGTCGTCTGCAGTCAACAGGTCAGCA
CGTACCAAACAAAAATCTACATTTTGTCCATTCTTTCGCCCAGCACCAAA
GTGCACTTTTCTCGGGGTAGGTTTGGGGTAGGGTGTTGTTCGGAAACAAA
GAACACGAACAAGCGCCTTGTCTCCAGGCGCAGGTCGCTGTTTTCGATTT
TTGTGTTCTTTGCTGTCTCTCTAGTCTTGAATATGCTGCTAATCTTGAGT
GCTTTCGTTGGGTGTTGGCCGATTTCGAACACCTCTACCAGTTTGGATAG
ATCCTGCATGGGCATGGTGCGAGGGTGGAAACAAGAGGTTGGCCAAGGTA
GGCGCGGTTTGCAGCACGGGAATAGTGCCAAGACTCAACCCGTAGCTGAA
ATTCGACAAATGGGACCAATTTCGCGTCTCTAAAGATTCGTTGACCCGGG
AGGACAAGCAAGACTGACCCTGTCTCCCGTTTGTTCTCAGTCACACATGG
CCCCCAATTGCTTCAACTTTAACGCAAAATAGAGATTAAAGTTATTGCCA
GGTTCGGATGCATTGTTCCAGACATGTGCACACGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1443:24210..24945+

>mRNA_E-siliculosus-1a_F_contig1443.2592.1 ID=mRNA_E-siliculosus-1a_F_contig1443.2592.1|Name=mRNA_E-siliculosus-1a_F_contig1443.2592.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=930bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1443:24210..24945+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTATTTAGTTTCGACCAATTTTATTCCCGACAAGTACTACCCGTCACC
CAAGAACGTCGTCTGCAGTCAACAGGTCAGCACGTACCAAACAAAAATCT
ACATTTTGTCCATTCTTTCGCCCAGCACCAAAGTGCACTTTTCTCGGGGT
AGGTTTGGGGTAGGGTGTTGTTCGGAAACAAAGAACACGAACAAGCGCCT
TGTCTCCAGGCGCAGGTCGCTGTTTTCGATTTTTGTGTTCTTTGCTGTCT
CTCTAGTCTTGAATATGCTGCTAATCTTGAGTGCTTTCGTTGGGTGTTGG
CCGATTTCGAACACCTCTACCAGTTTGGATAGATCCTGCATGGGCATGGT
GCGAGGGTGGAAACAAGAGGTTGGCCAAGGTAGGCGCGGTTTGCAGCACG
GGAATAGTGCCAAGACTCAACCCGTAGCTGAAATTCGACAAATGGGACCA
ATTTCGCGTCTCTAAATGTATTTAGTTTCGACCAATTTTATTCCCGACAA
GTACTACCCGTCACCCAAGAACGTCGTCTGCAGTCAACAGGTCAGCACGT
ACCAAACAAAAATCTACATTTTGTCCATTCTTTCGCCCAGCACCAAAGTG
CACTTTTCTCGGGGTAGGTTTGGGGTAGGGTGTTGTTCGGAAACAAAGAA
CACGAACAAGCGCCTTGTCTCCAGGCGCAGGTCGCTGTTTTCGATTTTTG
TGTTCTTTGCTGTCTCTCTAGTCTTGAATATGCTGCTAATCTTGAGTGCT
TTCGTTGGGTGTTGGCCGATTTCGAACACCTCTACCAGTTTGGATAGATC
CTGCATGGGCATGGTGCGAGGGTGGAAACAAGAGGTTGGCCAAGGTAGGC
GCGGTTTGCAGCACGGGAATAGTGCCAAGACTCAACCCGTAGCTGAAATT
CGACAAATGGGACCAATTTCGCGTCTCTAA
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