mRNA_E-siliculosus-1a_F_contig1441.2585.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Match: D7FSF1_ECTSI (Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF1_ECTSI) HSP 1 Score: 417 bits (1071), Expect = 2.670e-140 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 3
Query: 282 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKSSCC 905
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKSSCC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKSSCC 208
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Match: A0A835Z1V8_9STRA (Rab2A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V8_9STRA) HSP 1 Score: 361 bits (926), Expect = 2.080e-118 Identity = 183/212 (86.32%), Postives = 190/212 (89.62%), Query Frame = 3
Query: 282 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKSS----CC 905
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQP+HDLTIGVEFGARMI++D RQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDL RRAV+TKEGEQFA ENGLIFLETSAK A NVE AFI+TA KIY NI SGVYDPTNEAHG+KLGPAASLNY N A S CC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPLHDLTIGVEFGARMINVDARQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLEHRRAVSTKEGEQFAAENGLIFLETSAKTAANVEAAFIQTAEKIYGNIQSGVYDPTNEAHGVKLGPAASLNYGNSAAARTGSGXXXGCC 212
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Match: A0A7S2CHD5_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CHD5_9STRA) HSP 1 Score: 349 bits (896), Expect = 5.980e-114 Identity = 175/208 (84.13%), Postives = 186/208 (89.42%), Query Frame = 3
Query: 282 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKSSCC 905
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM++IDNRQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEA+QNSN NMVIMLIGNKSDL RRAV+TKEGEQFAEENGLIFLETSAK A NVE AFIKTA KIY+ ILSGVYD TNEAHGIK+G +N + + +CC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEAKQNSNPNMVIMLIGNKSDLDHRRAVSTKEGEQFAEENGLIFLETSAKTAANVEQAFIKTAEKIYEKILSGVYDVTNEAHGIKIGMNQHSGPDNNSGRSSNKACC 208
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Match: A0A7S2V0L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0L3_9STRA) HSP 1 Score: 348 bits (893), Expect = 5.190e-113 Identity = 181/217 (83.41%), Postives = 193/217 (88.94%), Query Frame = 3
Query: 264 EQQA*RMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKS---SCC 905
Q MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+ID++Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TF+HLTRWLEEARQNSNSNMVIMLIGNKSDL RRAV+TKEGEQFAEENGLIFLETSAK A NVE AFIKTA KIY+NILSGVYD TNEAHGIK+G A S Y+ A ++ S SCC
Sbjct: 25 SQHLRNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDSKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFSHLTRWLEEARQNSNSNMVIMLIGNKSDLEHRRAVSTKEGEQFAEENGLIFLETSAKTAENVEAAFIKTAEKIYENILSGVYDVTNEAHGIKVGMAGS-GYSAGAGGSNASQGKSCC 240
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Match: M4B5K5_HYAAE (Uncharacterized protein n=26 Tax=Oomycota TaxID=4762 RepID=M4B5K5_HYAAE) HSP 1 Score: 344 bits (882), Expect = 7.790e-112 Identity = 176/211 (83.41%), Postives = 187/211 (88.63%), Query Frame = 3
Query: 282 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLN---YNNVAPPADKSSCC 905
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+I+N+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM IMLIGNKSDL RRAV+ KEGEQFA+ENGLIFLETSAK A NVE AF+KTA+KIY NI SGV D TNEAHGIK+G S + N PPA KS CC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIENKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNKSDLEHRRAVSFKEGEQFAKENGLIFLETSAKTAANVEDAFVKTASKIYSNIQSGVCDVTNEAHGIKMGMTGSPGPGGFGNSNPPA-KSGCC 210
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Match: A0A485LBB8_9STRA (Aste57867_18783 protein n=7 Tax=Oomycota TaxID=4762 RepID=A0A485LBB8_9STRA) HSP 1 Score: 338 bits (868), Expect = 1.010e-109 Identity = 173/211 (81.99%), Postives = 184/211 (87.20%), Query Frame = 3
Query: 282 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLN---YNNVAPPADKSSCC 905
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDN+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM IMLIGNKSDL RRAV+ KEGEQFA+ENGLIFLETSAK A NVE AFIKTA KI+ NI +G+ D TNEAHGIK+G S + A A+K CC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNKSDLEHRRAVSYKEGEQFAKENGLIFLETSAKTAANVEDAFIKTAQKIHANIQAGICDVTNEAHGIKVGMTGSATPTGFGGNANNANKGGCC 211
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Match: A0A6V1NY85_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NY85_HETAK) HSP 1 Score: 338 bits (867), Expect = 1.380e-109 Identity = 174/210 (82.86%), Postives = 184/210 (87.62%), Query Frame = 3
Query: 282 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYN--NVAPPADKSSCC 905
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI ID+R++KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNK+DL RRAV+TKEGEQFAEENGLIFLETSAK A NVE AFIKTA KIY+NILSGVYD +E+ GIK+G + N A SCC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIDIDSRKIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKADLEHRRAVSTKEGEQFAEENGLIFLETSAKTAQNVEDAFIKTAEKIYENILSGVYDIQSESSGIKVGMSGGQGGNAYGSANREGSKSCC 210
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Match: A0A2D4BXC9_PYTIN (Rab2 family GTPase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXC9_PYTIN) HSP 1 Score: 340 bits (871), Expect = 2.940e-108 Identity = 174/207 (84.06%), Postives = 184/207 (88.89%), Query Frame = 3
Query: 282 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLN---YNNVAPPADK 893
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+IDN+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM IMLIGNKSDL RRAV+ KEGEQFA+ENGLIFLETSAK A NVE AF+KTAAKIY NI SGV D TNEAHGIK+G S + N PA+K
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNKSDLEHRRAVSYKEGEQFAKENGLIFLETSAKTAANVEDAFVKTAAKIYSNIQSGVCDVTNEAHGIKVGMTGSPGPGGFGNPNAPANK 207
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Match: A0A024UMG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMG6_9STRA) HSP 1 Score: 336 bits (861), Expect = 3.020e-108 Identity = 171/212 (80.66%), Postives = 184/212 (86.79%), Query Frame = 3
Query: 279 RMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLN---YNNVAPPADKSSCC 905
RMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+ID++Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM IMLIGNKSDL RRAV+ KEGEQFA+ENGLIFLETSAK A NVE AFIKTA KI+ NI +G+ D TNEAHGIK+G S + A+K CC
Sbjct: 28 RMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDSKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNKSDLEHRRAVSYKEGEQFAKENGLIFLETSAKTAANVEDAFIKTAQKIHANIQAGICDVTNEAHGIKVGMTGSATPTGFGGNGNNANKGGCC 239
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Match: A0A8J5J3E0_9STRA (SWIB/MDM2 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J3E0_9STRA) HSP 1 Score: 339 bits (870), Expect = 3.340e-106 Identity = 172/208 (82.69%), Postives = 186/208 (89.42%), Query Frame = 3
Query: 282 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLN---YNNVAPPADKS 896
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+I+N+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM IMLIGNKSDL RRAV+ KEGEQFA+ENGLIFLETSAK A NVE AF+KTA+KIY NI SGV D TNEAHGIK+G S + N PPA+++
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIENKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNKSDLEHRRAVSFKEGEQFAKENGLIFLETSAKTAANVEDAFVKTASKIYSNIQSGVCDVTNEAHGIKVGMTGSPGPGGFGNSNPPANRA 208 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1441.2585.1 >prot_E-siliculosus-1a_F_contig1441.2585.1 ID=prot_E-siliculosus-1a_F_contig1441.2585.1|Name=mRNA_E-siliculosus-1a_F_contig1441.2585.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=209bp MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIback to top mRNA from alignment at E-siliculosus-1a_F_contig1441:22696..31134+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1441.2585.1 ID=mRNA_E-siliculosus-1a_F_contig1441.2585.1|Name=mRNA_E-siliculosus-1a_F_contig1441.2585.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8439bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1441:22696..31134+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1441:22696..31134+ >mRNA_E-siliculosus-1a_F_contig1441.2585.1 ID=mRNA_E-siliculosus-1a_F_contig1441.2585.1|Name=mRNA_E-siliculosus-1a_F_contig1441.2585.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1441:22696..31134+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |