mRNA_E-siliculosus-1a_F_contig1441.2584.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Match: A0A6H5KXK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK8_9PHAE) HSP 1 Score: 712 bits (1839), Expect = 6.780e-255 Identity = 369/395 (93.42%), Postives = 374/395 (94.68%), Query Frame = 1
Query: 208 MRSSLSALYVFVLLWDGVVAFTAAPKAPPQSRGVPSFRNQRRRYYAGMASTRHRPTRVTCAA-SDPSSELVLDPSRRSDDDSTSSDIEGISNDDDARLSQRALLLLATGDSXXXXXXXXXXEETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTSGAPAPDEDAGEGGG 1389
MRSSL LYVF+LLWDGVVAFTAAPKA PQSR VPSFRNQRRRYYAG A+TR RPTR+TCAA SD SSELVLDPSRRSDDDSTS DIEGISNDDDARLSQR L XXXXXXXXXX ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYE GLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKL+GVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSI+AGMTSGAPAPDEDAGEG G
Sbjct: 1 MRSSLLVLYVFMLLWDGVVAFTAAPKALPQSR-VPSFRNQRRRYYAGTANTRRRPTRITCAAGSDSSSELVLDPSRRSDDDSTSIDIEGISNDDDARLSQRVSLXXXXXXXXXXXXXXXXXXETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYETGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLQGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSIMAGMTSGAPAPDEDAGEGAG 394
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Match: D7FSF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF2_ECTSI) HSP 1 Score: 698 bits (1802), Expect = 1.320e-249 Identity = 358/366 (97.81%), Postives = 360/366 (98.36%), Query Frame = 1
Query: 322 NQRRRYYAGMASTRHRPTRVTCAASDPSSELVLDPSRRSDDDSTSSDIEGISNDDDARLSQRALLLLATGDSXXXXXXXXXXEETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTSGAPAPDEDAGEGGGEGEELLTAAP 1419
NQRRRYYAG+ASTRHRPTR TCAASDPSSELVLDPSRRSDDDST +DIEGISNDDDARLSQRALLL AT XXXXXXXXXXEETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTSGAPAPDEDAGEGGGEGEELLTAAP
Sbjct: 25 NQRRRYYAGVASTRHRPTRTTCAASDPSSELVLDPSRRSDDDSTFNDIEGISNDDDARLSQRALLL-ATXXXXXXXXXXXXXEETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTSGAPAPDEDAGEGGGEGEELLTAAP 389
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Match: A0A836CP07_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP07_9STRA) HSP 1 Score: 310 bits (793), Expect = 7.190e-98 Identity = 150/279 (53.76%), Postives = 195/279 (69.89%), Query Frame = 1
Query: 568 EETGWVGETLSKGAEAVVSGVKSAARASKPLR-READGRIVPDGDGLLNLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTSGAPAPD-EDAGEGGGEGE 1398
EE G+ L K + + + P++ E G++ DG LLNL +L+ + LWI H+++TVD +WRGWT QE +RLP+DNW Y L EHPI+TKT INV IYL+GDWL+QV++GR + + +FDL RTLRNGLIG FGP+VH+YY +SD +LP VPINRP KI++DQSIYF SKC+ Y+ LV LLRGDSF E R + ++K VV TGW+FWP VH+FTY +IP +HRVLWVNCVDL+WSSIL+G+ SG E+ EG G+ E
Sbjct: 57 EEDTSTGQLLLKAGQDAAAVTLESLEPFNPVQINEVTGKVSLDGQKLLNLGVLLCAALWIAHTVITVDHAIWRGWTWQEIAMRLPYDNWGGYVGALDEHPILTKTTINVVIYLVGDWLAQVEFGRRD---ILDFDLGRTLRNGLIGGMFGPLVHYYYQWSDVILPMDVPINRPLKILMDQSIYFVSKCSAYMFLVGLLRGDSFGEVREQWQARIKTVVLTGWKFWPLVHVFTYSVIPAQHRVLWVNCVDLVWSSILSGLASGNQGESPEEVEEGAGDTE 332
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Match: A0A4D9D8B7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8B7_9STRA) HSP 1 Score: 274 bits (700), Expect = 2.310e-83 Identity = 121/213 (56.81%), Postives = 160/213 (75.12%), Query Frame = 1
Query: 709 NLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTS 1347
NL +L+ + ++ ++TVD WRGWT+QE ++R+P+DNW YE GL HPI KT INV IY+IGDW+SQV WGR ++ L +FDL RT RNGLIGA FGP+VH+YY++SD++LP VP+NR K+++DQS+YF +KC+ YI LV LLRGD+ VK++++ VV GWRFWP H+ TY +IPPRHRVLWVN +DLLWSSILA + S
Sbjct: 44 NLVLLITAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKN--LLDFDLARTARNGLIGAIFGPLVHYYYDWSDYILPMEVPVNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLAS 254
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Match: W7TW16_9STRA (Peroxisomal membrane 22 kDa (Mpv17 pmp22) family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TW16_9STRA) HSP 1 Score: 274 bits (700), Expect = 4.050e-81 Identity = 121/213 (56.81%), Postives = 160/213 (75.12%), Query Frame = 1
Query: 709 NLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTS 1347
NL +L+ + ++ ++TVD WRGWT+QE ++R+P+DNW YE GL HPI KT INV IY+IGDW+SQV WGR ++ L +FDL RT RNGLIGA FGP+VH+YY++SD++LP VP+NR K+++DQS+YF +KC+ YI LV LLRGD+ VK++++ VV GWRFWP H+ TY +IPPRHRVLWVN +DLLWSSILA + S
Sbjct: 140 NLVLLIAAAVYATSILITVDMESWRGWTIQEIMLRIPYDNWQEYEGGLSTHPIFVKTVINVVIYVIGDWMSQVGWGRTKN--LLDFDLARTARNGLIGAMFGPLVHYYYDWSDYILPMEVPVNRVLKLLMDQSVYFVAKCSAYIALVGLLRGDTPAVVAQDVKERIQPVVFRGWRFWPLAHVVTYGVIPPRHRVLWVNMLDLLWSSILASLAS 350
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Match: A0A7S2RJX8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJX8_9STRA) HSP 1 Score: 266 bits (680), Expect = 3.260e-80 Identity = 131/244 (53.69%), Postives = 171/244 (70.08%), Query Frame = 1
Query: 679 RIVPDGDGLLNLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTSGAPAPDEDAG---EGGGEGEE 1401
R+ GD L N L F GL V +I TVD+ +WRGWTLQE ++RLP DNW +YE+GL E P++TKT INV IYL+GDW++QV WGR+ L EFDL R LRNG+IG FGP+V YY+FSD +LPP V NRP+KI++DQ+IY +K ++YI LV LL G S +E VK++L ++ WRFWP VH+ TY ++P RHRVLWVN VDL+WSS+L+ M + E+AG + GEG+E
Sbjct: 120 RLSISGDLLPNFAALSFFGLAAVWTITTVDSGVWRGWTLQEIVVRLPLDNWKAYELGLGERPVLTKTLINVFIYLVGDWMAQVDWGRKP---LLEFDLGRILRNGMIGGLFGPLVSAYYDFSDTILPPEVASNRPWKILMDQTIYIATKSSIYIGLVGLLAGQSMDEVSEEVKERLWPILKVAWRFWPLVHLVTYGVVPARHRVLWVNMVDLVWSSMLSSMAN----QGEEAGKLLQHEGEGQE 356
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Match: A0A7S2R438_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R438_9STRA) HSP 1 Score: 243 bits (620), Expect = 5.710e-71 Identity = 112/213 (52.58%), Postives = 151/213 (70.89%), Query Frame = 1
Query: 709 NLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTS 1347
N +L+ + + ++S++ +D M RGW+ E +R+P DNW SYE L PI TKT INV IYL+GDWLSQ + ++E + +FD RTLRNGLIG CFGP+VH YY FSD +LP V +NR +KI +DQ+IY KC++YI+ V++L G+SF A+ TVK KL G++ T W+FWP VH TY +IP RHR+LWVN VDL+W++ILA TS
Sbjct: 88 NALLLLAAFGYAIYSLLNIDHGMMRGWSQSEIAMRIPLDNWASYEASLNNKPIWTKTIINVIIYLLGDWLSQTLFAKKEVL---DFDASRTLRNGLIGLCFGPIVHLYYEFSDSILPVEVGVNRLWKIGMDQTIYLSIKCSIYIVAVNMLSGESFGSAKDTVKTKLPGIMVTAWKFWPLVHCVTYGIIPARHRMLWVNSVDLIWNAILASQTS 297
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Match: A0A7S1UK34_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK34_9STRA) HSP 1 Score: 232 bits (592), Expect = 3.850e-68 Identity = 118/213 (55.40%), Postives = 145/213 (68.08%), Query Frame = 1
Query: 709 NLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGRE--EDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPINRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGM 1341
N +L V ++ TVDA +WRGWTLQE L+ LP DNW YE LL P+ TKTAINV IYL+GD+ +QV W +E E AL +FD RT RNGLI FGP VH+YY FSD +LP + +NR KI++DQSIY K A YI L ++L G++ E A +K +L V+ T WRFWP VH+ TY LIP RHRVLWVNCVDL+WSSILA +
Sbjct: 98 NALLLALVVATAVKTVFTVDAHIWRGWTLQEVLLTLPRDNWLGYEGALLTDPVGTKTAINVVIYLLGDYCAQVIWSKEPREGGAL-DFDPWRTARNGLIALIFGPFVHYYYEFSDHILPMTSNLNRVAKILMDQSIYISVKTAAYIGLSNVLAGETKEYAGEEIKTRLPTVLFTAWRFWPIVHVVTYGLIPARHRVLWVNCVDLVWSSILAAL 309
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Match: B8BTZ1_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTZ1_THAPS) HSP 1 Score: 228 bits (580), Expect = 7.950e-68 Identity = 107/215 (49.77%), Postives = 144/215 (66.98%), Query Frame = 1
Query: 703 LLNLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLP-PSVPI---NRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILA 1335
L NL +L S ++V S+ +D M RGWT E +R+P D W SYE L E P+ TKT IN+ IYL+GDWLSQ + ++ + +FD RTL+NG +G CFGP VH YY FSDW+LP V + NR FKI++DQ+IY KC++YI+ + +L GD+ A VK ++K ++ T W+FWP VH TY LIP RHR+LWVN VDL+W++ILA
Sbjct: 5 LFNLTLLAVSFGYVVFSVFNIDKGMTRGWTPGEIGMRIPLDTWASYENSLSEKPVATKTIINIVIYLLGDWLSQTLFQKKNVL---DFDAARTLKNGFVGMCFGPAVHEYYEFSDWILPVDGVTLGITNRAFKILMDQTIYLSIKCSIYIMAIGVLNGDTVGNASQNVKNRIKPIMFTAWKFWPLVHCVTYGLIPARHRILWVNSVDLVWNAILA 216
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Match: K0RWU0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RWU0_THAOC) HSP 1 Score: 234 bits (597), Expect = 9.830e-68 Identity = 112/229 (48.91%), Postives = 149/229 (65.07%), Query Frame = 1
Query: 703 LLNLCILVFSGLWIVHSIVTVDATMWRGWTLQETLIRLPWDNWDSYEMGLLEHPIITKTAINVGIYLIGDWLSQVKWGREEDVALWEFDLQRTLRNGLIGACFGPVVHFYYNFSDWVLPPSVPI----NRPFKIMLDQSIYFCSKCAVYILLVSLLRGDSFEEARGTVKKKLKGVVTTGWRFWPFVHIFTYFLIPPRHRVLWVNCVDLLWSSILAGMTSGAPAPDEDAG 1377
L N +L S ++ ++++ +D M RGWT E +R+P D W SYE L P+ TKT INV IYL+GDWLSQ + + + +FD RTLRNGLIGACFGP VH YY FSDW+LP NR FKI++DQS+Y KC++YIL V +L G+ E++ V+ ++K ++ T W+FWP VH TY LIP RHR+LWVN VDL+W++ILAG S D +AG
Sbjct: 134 LFNAALLAASFGYVAYTVLNIDRGMTRGWTAAEIGMRIPLDTWASYENSLSAKPVATKTIINVVIYLLGDWLSQTIFTGADVL---DFDAGRTLRNGLIGACFGPAVHEYYEFSDWILPVDGSTLGVTNRAFKILMDQSLYLSVKCSIYILAVGVLSGEGLEDSAENVRTRIKPIMFTAWKFWPLVHCVTYGLIPARHRILWVNSVDLVWNAILAGFASDDEDGDSEAG 359 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1441.2584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1441.2584.1 >prot_E-siliculosus-1a_F_contig1441.2584.1 ID=prot_E-siliculosus-1a_F_contig1441.2584.1|Name=mRNA_E-siliculosus-1a_F_contig1441.2584.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=422bp MRSSLSALYVFVLLWDGVVAFTAAPKAPPQSRGVPSFRNQRRRYYAGMASback to top mRNA from alignment at E-siliculosus-1a_F_contig1441:14335..20575+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1441.2584.1 ID=mRNA_E-siliculosus-1a_F_contig1441.2584.1|Name=mRNA_E-siliculosus-1a_F_contig1441.2584.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6241bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1441:14335..20575+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1441:14335..20575+ >mRNA_E-siliculosus-1a_F_contig1441.2584.1 ID=mRNA_E-siliculosus-1a_F_contig1441.2584.1|Name=mRNA_E-siliculosus-1a_F_contig1441.2584.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2532bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1441:14335..20575+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |