mRNA_E-siliculosus-1a_F_contig1440.2579.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1440.2579.1
Unique NamemRNA_E-siliculosus-1a_F_contig1440.2579.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1440.2579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1440contigE-siliculosus-1a_F_contig1440:8526..9764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size318
Model size365
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1440.2579.1prot_E-siliculosus-1a_F_contig1440.2579.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1440 8526..9718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.8224547-CDS-E-siliculosus-1a_F_contig1440:8525..85621622927951.8224547-CDS-E-siliculosus-1a_F_contig1440:8525..8562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1440 8526..8562 +
1696318750.844032-CDS-E-siliculosus-1a_F_contig1440:8525..85621696318750.844032-CDS-E-siliculosus-1a_F_contig1440:8525..8562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1440 8526..8562 +
1622927951.8363957-CDS-E-siliculosus-1a_F_contig1440:9105..92351622927951.8363957-CDS-E-siliculosus-1a_F_contig1440:9105..9235Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1440 9106..9235 +
1696318750.8519027-CDS-E-siliculosus-1a_F_contig1440:9105..92351696318750.8519027-CDS-E-siliculosus-1a_F_contig1440:9105..9235Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1440 9106..9235 +
1622927951.8516006-CDS-E-siliculosus-1a_F_contig1440:9567..97181622927951.8516006-CDS-E-siliculosus-1a_F_contig1440:9567..9718Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1440 9568..9718 +
1696318750.8598633-CDS-E-siliculosus-1a_F_contig1440:9567..97181696318750.8598633-CDS-E-siliculosus-1a_F_contig1440:9567..9718Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1440 9568..9718 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.8723533-UTR-E-siliculosus-1a_F_contig1440:9718..97641622927951.8723533-UTR-E-siliculosus-1a_F_contig1440:9718..9764Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1440 9719..9764 +
1696318750.8676267-UTR-E-siliculosus-1a_F_contig1440:9718..97641696318750.8676267-UTR-E-siliculosus-1a_F_contig1440:9718..9764Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1440 9719..9764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1440.2579.1

>prot_E-siliculosus-1a_F_contig1440.2579.1 ID=prot_E-siliculosus-1a_F_contig1440.2579.1|Name=mRNA_E-siliculosus-1a_F_contig1440.2579.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp
TCSTDLLFIVGLGFPGVHHEGLDEREGSEPGQNDRLPRDRNLLWACHCKA
EDGCPRGGIKAGGGGGETEKSSRGSTTLCVAATWARRQDGGADNMPKITT
LALTQ*
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mRNA from alignment at E-siliculosus-1a_F_contig1440:8526..9764+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1440.2579.1 ID=mRNA_E-siliculosus-1a_F_contig1440.2579.1|Name=mRNA_E-siliculosus-1a_F_contig1440.2579.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1239bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1440:8526..9764+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGTGTAGTACCGATCTTCTTTTTATTGTCGGCCTTGGTGAGTCGCGTTG
GGAGCGGCACAGCAGTAGAAAAAACAAAATCACACATGGCACGCGGCGAT
CATGTTGGGAATGACCACAACCAAACACGCATGAGCGGCACAACGACTAC
TGCACCGCACGGCAGTTTTTTTCCACCGGGAGCGGGGTATGCATACGTGG
TACGCTGTAGGATTTATGTCGCGACCGGAGTGACTGACCCTTCACTGCAA
GGACTCCAGCACACCCCTTTCGAGACCCATCTTGCATCTTGCTTATGTAA
CTTCTGCCATGCAACGATCCAGGAAATGGGTATTTCTTGTTTTTTTTTCC
AACGGAACTCATGTCCATCCAACGATAAGCTGACTTTCAGGGTCTTGTAC
GTGGGCAACCGTTTTTCCGCGAGAGGTTATGGCGGCACACATGAACCCTA
CGCCGCTGCTTTGTCTTGTGGTTAGGATGCGGCAGTAATGTGGCATAGTT
TTCGCGTGAAAATGTGGGGTATCGAGCCGATTTTTTCTTGGCCCTTTCTT
GGCGAAACGCCTGTGCTCCTTTATCGTCAGGTTTCCCTGGTGTTCATCAT
GAGGGACTTGATGAACGGGAAGGAAGTGAACCAGGTCAGAATGATCGGCT
GCCTCGTGACCGTAATCTTCTGTGGGCTTGCCATTGCAAAGCAGAGGATG
GATGCCCAAGGCAAGTCGCGACAACAGGGGCAGCGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGTGATACGAGACTACGTTC
ATGTGGCGTCGAAACACTGCAAGCAGGGGGGTTTGCACCTAGTTCAAGAC
TAAACAAGAGCACTCAATCAAATCTTTTTGAGCCGACGTTCAAGACGTCT
GCAGATGTTCACGATACGCCCTTGTTGATGGCGAGGTGTGGGTCTACTTT
CTCGTTTACTCTAGTAGAACCCCTCAGCAGCAGCGACAGAGACACCCGCA
ACGCACGCTCTCTCCCCCCCTTCTTGTTGCCGAAACGAACAGGGGAGGAA
TTAAGGCTGGCGGCGGAGGAGGCGAGACGGAGAAATCCTCCCGGGGTTCA
ACAACACTGTGCGTAGCGGCAACATGGGCCAGGAGACAAGACGGTGGGGC
CGACAACATGCCCAAAATAACTACACTGGCATTGACGCAGTAAACTGTAA
TAGCGGAGCGCCGTATCGAGTTAGGAGAAACGCAGGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1440:8526..9764+

>mRNA_E-siliculosus-1a_F_contig1440.2579.1 ID=mRNA_E-siliculosus-1a_F_contig1440.2579.1|Name=mRNA_E-siliculosus-1a_F_contig1440.2579.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1440:8526..9764+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGTGTAGTACCGATCTTCTTTTTATTGTCGGCCTTGACGTGTAGTACCG
ATCTTCTTTTTATTGTCGGCCTTGGTTTCCCTGGTGTTCATCATGAGGGA
CTTGATGAACGGGAAGGAAGTGAACCAGGTCAGAATGATCGGCTGCCTCG
TGACCGTAATCTTCTGTGGGCTTGCCATTGCAAAGCAGAGGATGGATGCC
CAAGGTTTCCCTGGTGTTCATCATGAGGGACTTGATGAACGGGAAGGAAG
TGAACCAGGTCAGAATGATCGGCTGCCTCGTGACCGTAATCTTCTGTGGG
CTTGCCATTGCAAAGCAGAGGATGGATGCCCAAGGGGAGGAATTAAGGCT
GGCGGCGGAGGAGGCGAGACGGAGAAATCCTCCCGGGGTTCAACAACACT
GTGCGTAGCGGCAACATGGGCCAGGAGACAAGACGGTGGGGCCGACAACA
TGCCCAAAATAACTACACTGGCATTGACGCAGTAAGGGAGGAATTAAGGC
TGGCGGCGGAGGAGGCGAGACGGAGAAATCCTCCCGGGGTTCAACAACAC
TGTGCGTAGCGGCAACATGGGCCAGGAGACAAGACGGTGGGGCCGACAAC
ATGCCCAAAATAACTACACTGGCATTGACGCAGTAA
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