mRNA_E-siliculosus-1a_F_contig144.2577.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: D7G6H3_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H3_ECTSI) HSP 1 Score: 778 bits (2008), Expect = 1.520e-279 Identity = 418/460 (90.87%), Postives = 423/460 (91.96%), Query Frame = 3
Query: 3 PPVSGQIRVHRRSGALPGSLSPHRDSGRQSAKDHPTTSRRRRGRLRSGSTVHDWPLSPQRSPSSTPDVVDREEQEPVTAVASVGALRNGRSGETMNHRAGDTVGFAHQTQGGSNRCRRKXXXXXXXXXLQTLGDIEIEAAEALSTMEANIVEAESLGFETAIRPSTGVGAAVAPSIVENEANVANRKRXXXXXXQLLQVDGVVSTDEIATRDDVDTDLSRSGGKDVSCSGSGSFSEERSSASTRTRPLATRGLEGSQPMAEQAETLLQGGHSIAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIVPARDGVADAP 1382
PPVSGQIR HRRS L GSLSPHRDSGRQSAK HPTTSRRRRGRLRSGSTVHDWPLSPQRSP STPDV DREE EPVTAVASVGALRNG S ETMNHRA DTVG AHQTQGGSNRCRRK XXXXXXX LQTLGDIE+EAAE LS ME +IVEAESLG ETAIRPSTGVGAAVAP +V+NEANVANR+R QLLQVDGVVSTDEIATRDD DTDLSRSGGKDVSCSGSG FSEERSS STR RPLAT GLE SQ MAEQAETLLQGGHS AVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIV DGVAD P
Sbjct: 46 PPVSGQIRAHRRSKGLSGSLSPHRDSGRQSAKHHPTTSRRRRGRLRSGSTVHDWPLSPQRSPPSTPDVADREEHEPVTAVASVGALRNGTSAETMNHRAADTVGLAHQTQGGSNRCRRKRXXXXXXXRLQTLGDIEVEAAEGLSAMEPSIVEAESLGLETAIRPSTGVGAAVAPGVVDNEANVANRERRQRQQ-QLLQVDGVVSTDEIATRDDADTDLSRSGGKDVSCSGSGFFSEERSSTSTRARPLATGGLESSQLMAEQAETLLQGGHSKAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIVSVGDGVADTP 504
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A6H5L744_9PHAE (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L744_9PHAE) HSP 1 Score: 756 bits (1953), Expect = 1.250e-271 Identity = 411/460 (89.35%), Postives = 416/460 (90.43%), Query Frame = 3
Query: 3 PPVSGQIRVHRRSGALPGSLSPHRDSGRQSAKDHPTTSRRRRGRLRSGSTVHDWPLSPQRSPSSTPDVVDREEQEPVTAVASVGALRNGRSGETMNHRAGDTVGFAHQTQGGSNRCRRKXXXXXXXXXLQTLGDIEIEAAEALSTMEANIVEAESLGFETAIRPSTGVGAAVAPSIVENEANVANRKRXXXXXXQLLQVDGVVSTDEIATRDDVDTDLSRSGGKDVSCSGSGSFSEERSSASTRTRPLATRGLEGSQPMAEQAETLLQGGHSIAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIVPARDGVADAP 1382
PPVS QIR HRRS ALPGSLSPHRDSG SAKDHPTTSRRRR RLRSGSTVHDWPL PQRS SST D VDREEQEPVTAVASVGALRNGRSGETMNHR GDT GFAHQTQGGSNRCRRK XXXXXX LQTLG+IE+ AAEAL MEANIVEAESLG E AIRPSTGVGAAVAPSIV+NEANVANR+R QLLQVDGVVSTDEIATRDDVD DL RSGGKDVSCSGSGSFSEERSS ST TRP AT GLE SQ MAEQAETLLQG H+ AVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAET TRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKAR NWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRE EI A DGVAD P
Sbjct: 18 PPVSRQIRAHRRSRALPGSLSPHRDSGCHSAKDHPTTSRRRRCRLRSGSTVHDWPLPPQRSQSSTADFVDREEQEPVTAVASVGALRNGRSGETMNHRGGDTAGFAHQTQGGSNRCRRKRXXXXXXLRLQTLGNIEVGAAEALVAMEANIVEAESLGLEAAIRPSTGVGAAVAPSIVDNEANVANRERRKRQQ-QLLQVDGVVSTDEIATRDDVDADLYRSGGKDVSCSGSGSFSEERSSTSTGTRPSATGGLEASQLMAEQAETLLQGRHTNAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETATTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARGNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREEEIASAGDGVADTP 476
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A7S3Y7A9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7A9_HETAK) HSP 1 Score: 162 bits (409), Expect = 1.180e-43 Identity = 85/161 (52.80%), Postives = 108/161 (67.08%), Query Frame = 3
Query: 864 EEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGE 1346
EE+D RFMR+ALR A A EVP+GAI+ D V++ GRN VE +DA+ HAE+ CL+ A+K NWRL TLY T+EPC MCL+A Q FRV RVV+GA + LGACG ++DL + RH FH+L+V GGVLAEE + L+ FFR RR + E
Sbjct: 8 EEEDARFMRLALRHADWALRAREVPVGAIIV-------DKNGEVVAAGRNSVEKNKDATCHAEINCLKTASKVLDNWRLLDCTLYCTLEPCVMCLAAIQNFRVRRVVYGARDHRLGACGTYLDLPAHRHPFHQLQVTGGVLAEESSDLLKQFFRERRTKNE 161
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A7S2TMM0_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TMM0_9EUKA) HSP 1 Score: 160 bits (406), Expect = 1.280e-41 Identity = 93/190 (48.95%), Postives = 114/190 (60.00%), Query Frame = 3
Query: 810 GHSIAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELE-VKGGVLAEECALPLRGFFRSRRREGEIVPARDGVAD 1376
G I V+E + +EE D +MR AL LA A GEVPIGA+L + D V+++ N VE +DA+AHAEMLC++ A++ R NWRL TTLY T+EPC MC+SA L RVDRVV+G N LGACG W+DL S H FH V GGVL EE A L FFRSRR+ E + V D
Sbjct: 30 GKDIHVREGRNGILGSAAEERDLVYMRRALELARDAAEIGEVPIGAVLVD------DATGEVIASQHNCVETTKDATAHAEMLCIREASRERGNWRLGSTTLYCTLEPCPMCISALALARVDRVVYGETNDRLGACGTWMDLPSTCHPFHTFSRVDGGVLREESAKLLISFFRSRRQAAEAKRSSKHVTD 213
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A6M2AAF0_9BACT (tRNA-specific adenosine deaminase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M2AAF0_9BACT) HSP 1 Score: 151 bits (382), Expect = 6.970e-40 Identity = 78/157 (49.68%), Postives = 102/157 (64.97%), Query Frame = 3
Query: 870 DDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRE 1340
DD FMR AL+ A +A E EVP+GA+L + RV++ G N+VE +DA+AHAEMLC+ + A+A NWRL G+TLY T+EPC MC A L RV R+V+GAP+ GA G WVDL + H H L + GVLA+EC ++ FFR RR+E
Sbjct: 5 DDTWFMRQALKEAEKAFREEEVPVGAVLVKMG--------RVIARGHNQVELLKDATAHAEMLCIGSGAQALENWRLLGSTLYCTIEPCPMCAGALLLSRVKRLVWGAPDIRHGANGSWVDLFANPHPTHTLSITSGVLADECGAIIQEFFRKRRKE 153
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A1M3BDS4_9CHLA (tRNA-specific adenosine deaminase n=1 Tax=Chlamydia sp. 32-24 TaxID=1895742 RepID=A0A1M3BDS4_9CHLA) HSP 1 Score: 150 bits (380), Expect = 2.070e-39 Identity = 80/168 (47.62%), Postives = 109/168 (64.88%), Query Frame = 3
Query: 837 FASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRE 1340
FA+ VP+ ++D+ FM AL+ A +A E EVP+GA+L + +V++ G N+VE DA+AHAEMLCL +A A +NWRL TTLY+T+EPCAMC A L RV R+V+GAP+ GA G WVDL ++H H++E+K GVL A L+ FF+ RR E
Sbjct: 7 FATTVPQ---DEDEHFMLEALKQAWKAYQENEVPVGAVLVQNG--------QVIARGYNQVEKLIDATAHAEMLCLTSAESALNNWRLLETTLYITIEPCAMCAGAILLTRVSRLVWGAPDIRHGANGSWVDLFEKKHPTHQIEIKKGVLENYAAALLKEFFQKRRSE 163
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A2V3J170_9FLOR (tRNA-specific adenosine deaminase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J170_9FLOR) HSP 1 Score: 150 bits (380), Expect = 6.270e-39 Identity = 82/156 (52.56%), Postives = 99/156 (63.46%), Query Frame = 3
Query: 873 DDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHEL-EVKGGVLAEECALPLRGFFRSRRR 1337
D +M AL A RA + EVPIGA+L D +++ G N VE D + HAEM+C+Q A R WRL GT LY TVEPCAMC+SA L R+ RVVFGA + LGACG WVDL +++H FH L EV GGVLAE+ A LR FF+ RRR
Sbjct: 40 DAFYMHAALEQAHRAFIANEVPIGAVLV-------DASGNIIAEGHNAVERTTDCTQHAEMVCIQQAMSQRRAWRLNGTILYSTVEPCAMCISAITLARIRRVVFGARDLRLGACGTWVDLVNEKHPFHTLDEVVGGVLAEQSAALLRSFFQERRR 188
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: UPI000E765E04 (tRNA adenosine(34) deaminase TadA n=2 Tax=Shewanella algidipiscicola TaxID=614070 RepID=UPI000E765E04) HSP 1 Score: 148 bits (373), Expect = 2.660e-38 Identity = 82/163 (50.31%), Postives = 106/163 (65.03%), Query Frame = 3
Query: 864 EEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIV 1352
+E D +FMR AL LA +A GEVP+GA+L + +G+ +L+ G N G+ DASAHAEMLC++AA + N+RL TTLYVT+EPCAMC +A RV RVVFGA +P GA G +DL H+LEV GVLA+ECA L FFR RR+E + +
Sbjct: 10 QEQDIQFMRHALALAAKAEAAGEVPVGALLVK------EGK--ILAEGFNLNIGQHDASAHAEMLCIRAAGQVIENYRLLDTTLYVTLEPCAMCAAAMVHARVSRVVFGAADPKTGAAGSVLDLLRFSAFNHQLEVTSGVLADECATQLSAFFRRRRQEKKAI 164
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: D6YV96_WADCW (tRNA-specific adenosine deaminase n=2 Tax=Waddlia chondrophila TaxID=71667 RepID=D6YV96_WADCW) HSP 1 Score: 148 bits (373), Expect = 2.740e-38 Identity = 74/159 (46.54%), Postives = 107/159 (67.30%), Query Frame = 3
Query: 870 DDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGE 1346
+D+ +M AL+ A +A ++GEVP+GAIL + +G+ V++ G N+VE RDA+AHAEMLC+ A A NWRL G TLY T+EPC+MC A L RV +V+GAP+ GA G WV+L + H HE++V+ G+LA+ CA+ ++ FF+ RR E +
Sbjct: 18 EDETYMLAALKEAWKAFVKGEVPVGAILVK------EGK--VIARGHNQVEMLRDATAHAEMLCITVAEAAEDNWRLNGATLYCTIEPCSMCAGAMLLSRVSTLVWGAPDIRHGANGSWVNLFGKPHPTHEIQVRNGILADFCAMLMQDFFKKRRLENK 168
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A0G4GWR4_VITBC (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWR4_VITBC) HSP 1 Score: 148 bits (374), Expect = 3.370e-38 Identity = 80/182 (43.96%), Postives = 109/182 (59.89%), Query Frame = 3
Query: 873 DDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQ-RHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIVPARDGVADAP*CSGIEVGRKG 1415
D+R+MR+AL+ A A GEVPIGA+L DG+ VLS GRN VE DA+AHAE+ C++ A++ WRL TLY T+EPC MC+ A QL R+ +V+GA + +G G WV L+++ +H FH++ V+GGV+A E LR FFR R AR G + P +G G G
Sbjct: 24 DERYMRLALQQAAMAAERGEVPIGAVLV-------DGQGEVLSVGRNGVEAAHDATAHAELQCIREASQILGTWRLLNCTLYTTLEPCPMCVGAMQLARIHTLVYGASDNRMGGAGSWVSLATEPKHPFHQMAVRGGVMATEARQLLRTFFREAR-------ARRGASGVPSLTGEGRGGSG 191 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig144.2577.1 >prot_E-siliculosus-1a_F_contig144.2577.1 ID=prot_E-siliculosus-1a_F_contig144.2577.1|Name=mRNA_E-siliculosus-1a_F_contig144.2577.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=367bp MNHRAGDTVGFAHQTQGGSNRCRRKRQRRRQRLRLQTLGDIEIEAAEALSback to top mRNA from alignment at E-siliculosus-1a_F_contig144:59711..62447- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig144.2577.1 ID=mRNA_E-siliculosus-1a_F_contig144.2577.1|Name=mRNA_E-siliculosus-1a_F_contig144.2577.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2737bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig144:59711..62447- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig144:59711..62447- >mRNA_E-siliculosus-1a_F_contig144.2577.1 ID=mRNA_E-siliculosus-1a_F_contig144.2577.1|Name=mRNA_E-siliculosus-1a_F_contig144.2577.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2202bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig144:59711..62447- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |