mRNA_E-siliculosus-1a_F_contig144.2577.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig144.2577.1
Unique NamemRNA_E-siliculosus-1a_F_contig144.2577.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: D7G6H3_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H3_ECTSI)

HSP 1 Score: 778 bits (2008), Expect = 1.520e-279
Identity = 418/460 (90.87%), Postives = 423/460 (91.96%), Query Frame = 3
Query:    3 PPVSGQIRVHRRSGALPGSLSPHRDSGRQSAKDHPTTSRRRRGRLRSGSTVHDWPLSPQRSPSSTPDVVDREEQEPVTAVASVGALRNGRSGETMNHRAGDTVGFAHQTQGGSNRCRRKXXXXXXXXXLQTLGDIEIEAAEALSTMEANIVEAESLGFETAIRPSTGVGAAVAPSIVENEANVANRKRXXXXXXQLLQVDGVVSTDEIATRDDVDTDLSRSGGKDVSCSGSGSFSEERSSASTRTRPLATRGLEGSQPMAEQAETLLQGGHSIAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIVPARDGVADAP 1382
            PPVSGQIR HRRS  L GSLSPHRDSGRQSAK HPTTSRRRRGRLRSGSTVHDWPLSPQRSP STPDV DREE EPVTAVASVGALRNG S ETMNHRA DTVG AHQTQGGSNRCRRK XXXXXXX LQTLGDIE+EAAE LS ME +IVEAESLG ETAIRPSTGVGAAVAP +V+NEANVANR+R      QLLQVDGVVSTDEIATRDD DTDLSRSGGKDVSCSGSG FSEERSS STR RPLAT GLE SQ MAEQAETLLQGGHS AVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIV   DGVAD P
Sbjct:   46 PPVSGQIRAHRRSKGLSGSLSPHRDSGRQSAKHHPTTSRRRRGRLRSGSTVHDWPLSPQRSPPSTPDVADREEHEPVTAVASVGALRNGTSAETMNHRAADTVGLAHQTQGGSNRCRRKRXXXXXXXRLQTLGDIEVEAAEGLSAMEPSIVEAESLGLETAIRPSTGVGAAVAPGVVDNEANVANRERRQRQQ-QLLQVDGVVSTDEIATRDDADTDLSRSGGKDVSCSGSGFFSEERSSTSTRARPLATGGLESSQLMAEQAETLLQGGHSKAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIVSVGDGVADTP 504          
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A6H5L744_9PHAE (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L744_9PHAE)

HSP 1 Score: 756 bits (1953), Expect = 1.250e-271
Identity = 411/460 (89.35%), Postives = 416/460 (90.43%), Query Frame = 3
Query:    3 PPVSGQIRVHRRSGALPGSLSPHRDSGRQSAKDHPTTSRRRRGRLRSGSTVHDWPLSPQRSPSSTPDVVDREEQEPVTAVASVGALRNGRSGETMNHRAGDTVGFAHQTQGGSNRCRRKXXXXXXXXXLQTLGDIEIEAAEALSTMEANIVEAESLGFETAIRPSTGVGAAVAPSIVENEANVANRKRXXXXXXQLLQVDGVVSTDEIATRDDVDTDLSRSGGKDVSCSGSGSFSEERSSASTRTRPLATRGLEGSQPMAEQAETLLQGGHSIAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIVPARDGVADAP 1382
            PPVS QIR HRRS ALPGSLSPHRDSG  SAKDHPTTSRRRR RLRSGSTVHDWPL PQRS SST D VDREEQEPVTAVASVGALRNGRSGETMNHR GDT GFAHQTQGGSNRCRRK XXXXXX  LQTLG+IE+ AAEAL  MEANIVEAESLG E AIRPSTGVGAAVAPSIV+NEANVANR+R      QLLQVDGVVSTDEIATRDDVD DL RSGGKDVSCSGSGSFSEERSS ST TRP AT GLE SQ MAEQAETLLQG H+ AVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAET  TRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKAR NWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRE EI  A DGVAD P
Sbjct:   18 PPVSRQIRAHRRSRALPGSLSPHRDSGCHSAKDHPTTSRRRRCRLRSGSTVHDWPLPPQRSQSSTADFVDREEQEPVTAVASVGALRNGRSGETMNHRGGDTAGFAHQTQGGSNRCRRKRXXXXXXLRLQTLGNIEVGAAEALVAMEANIVEAESLGLEAAIRPSTGVGAAVAPSIVDNEANVANRERRKRQQ-QLLQVDGVVSTDEIATRDDVDADLYRSGGKDVSCSGSGSFSEERSSTSTGTRPSATGGLEASQLMAEQAETLLQGRHTNAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETATTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARGNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREEEIASAGDGVADTP 476          
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A7S3Y7A9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7A9_HETAK)

HSP 1 Score: 162 bits (409), Expect = 1.180e-43
Identity = 85/161 (52.80%), Postives = 108/161 (67.08%), Query Frame = 3
Query:  864 EEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGE 1346
            EE+D RFMR+ALR A  A    EVP+GAI+        D    V++ GRN VE  +DA+ HAE+ CL+ A+K   NWRL   TLY T+EPC MCL+A Q FRV RVV+GA +  LGACG ++DL + RH FH+L+V GGVLAEE +  L+ FFR RR + E
Sbjct:    8 EEEDARFMRLALRHADWALRAREVPVGAIIV-------DKNGEVVAAGRNSVEKNKDATCHAEINCLKTASKVLDNWRLLDCTLYCTLEPCVMCLAAIQNFRVRRVVYGARDHRLGACGTYLDLPAHRHPFHQLQVTGGVLAEESSDLLKQFFRERRTKNE 161          
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A7S2TMM0_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TMM0_9EUKA)

HSP 1 Score: 160 bits (406), Expect = 1.280e-41
Identity = 93/190 (48.95%), Postives = 114/190 (60.00%), Query Frame = 3
Query:  810 GHSIAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELE-VKGGVLAEECALPLRGFFRSRRREGEIVPARDGVAD 1376
            G  I V+E     +   +EE D  +MR AL LA  A   GEVPIGA+L +      D    V+++  N VE  +DA+AHAEMLC++ A++ R NWRL  TTLY T+EPC MC+SA  L RVDRVV+G  N  LGACG W+DL S  H FH    V GGVL EE A  L  FFRSRR+  E   +   V D
Sbjct:   30 GKDIHVREGRNGILGSAAEERDLVYMRRALELARDAAEIGEVPIGAVLVD------DATGEVIASQHNCVETTKDATAHAEMLCIREASRERGNWRLGSTTLYCTLEPCPMCISALALARVDRVVYGETNDRLGACGTWMDLPSTCHPFHTFSRVDGGVLREESAKLLISFFRSRRQAAEAKRSSKHVTD 213          
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A6M2AAF0_9BACT (tRNA-specific adenosine deaminase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M2AAF0_9BACT)

HSP 1 Score: 151 bits (382), Expect = 6.970e-40
Identity = 78/157 (49.68%), Postives = 102/157 (64.97%), Query Frame = 3
Query:  870 DDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRE 1340
            DD  FMR AL+ A +A  E EVP+GA+L +          RV++ G N+VE  +DA+AHAEMLC+ + A+A  NWRL G+TLY T+EPC MC  A  L RV R+V+GAP+   GA G WVDL +  H  H L +  GVLA+EC   ++ FFR RR+E
Sbjct:    5 DDTWFMRQALKEAEKAFREEEVPVGAVLVKMG--------RVIARGHNQVELLKDATAHAEMLCIGSGAQALENWRLLGSTLYCTIEPCPMCAGALLLSRVKRLVWGAPDIRHGANGSWVDLFANPHPTHTLSITSGVLADECGAIIQEFFRKRRKE 153          
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A1M3BDS4_9CHLA (tRNA-specific adenosine deaminase n=1 Tax=Chlamydia sp. 32-24 TaxID=1895742 RepID=A0A1M3BDS4_9CHLA)

HSP 1 Score: 150 bits (380), Expect = 2.070e-39
Identity = 80/168 (47.62%), Postives = 109/168 (64.88%), Query Frame = 3
Query:  837 FASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRRE 1340
            FA+ VP+   ++D+ FM  AL+ A +A  E EVP+GA+L +          +V++ G N+VE   DA+AHAEMLCL +A  A +NWRL  TTLY+T+EPCAMC  A  L RV R+V+GAP+   GA G WVDL  ++H  H++E+K GVL    A  L+ FF+ RR E
Sbjct:    7 FATTVPQ---DEDEHFMLEALKQAWKAYQENEVPVGAVLVQNG--------QVIARGYNQVEKLIDATAHAEMLCLTSAESALNNWRLLETTLYITIEPCAMCAGAILLTRVSRLVWGAPDIRHGANGSWVDLFEKKHPTHQIEIKKGVLENYAAALLKEFFQKRRSE 163          
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A2V3J170_9FLOR (tRNA-specific adenosine deaminase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J170_9FLOR)

HSP 1 Score: 150 bits (380), Expect = 6.270e-39
Identity = 82/156 (52.56%), Postives = 99/156 (63.46%), Query Frame = 3
Query:  873 DDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHEL-EVKGGVLAEECALPLRGFFRSRRR 1337
            D  +M  AL  A RA +  EVPIGA+L        D    +++ G N VE   D + HAEM+C+Q A   R  WRL GT LY TVEPCAMC+SA  L R+ RVVFGA +  LGACG WVDL +++H FH L EV GGVLAE+ A  LR FF+ RRR
Sbjct:   40 DAFYMHAALEQAHRAFIANEVPIGAVLV-------DASGNIIAEGHNAVERTTDCTQHAEMVCIQQAMSQRRAWRLNGTILYSTVEPCAMCISAITLARIRRVVFGARDLRLGACGTWVDLVNEKHPFHTLDEVVGGVLAEQSAALLRSFFQERRR 188          
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: UPI000E765E04 (tRNA adenosine(34) deaminase TadA n=2 Tax=Shewanella algidipiscicola TaxID=614070 RepID=UPI000E765E04)

HSP 1 Score: 148 bits (373), Expect = 2.660e-38
Identity = 82/163 (50.31%), Postives = 106/163 (65.03%), Query Frame = 3
Query:  864 EEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIV 1352
            +E D +FMR AL LA +A   GEVP+GA+L +      +G+  +L+ G N   G+ DASAHAEMLC++AA +   N+RL  TTLYVT+EPCAMC +A    RV RVVFGA +P  GA G  +DL       H+LEV  GVLA+ECA  L  FFR RR+E + +
Sbjct:   10 QEQDIQFMRHALALAAKAEAAGEVPVGALLVK------EGK--ILAEGFNLNIGQHDASAHAEMLCIRAAGQVIENYRLLDTTLYVTLEPCAMCAAAMVHARVSRVVFGAADPKTGAAGSVLDLLRFSAFNHQLEVTSGVLADECATQLSAFFRRRRQEKKAI 164          
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: D6YV96_WADCW (tRNA-specific adenosine deaminase n=2 Tax=Waddlia chondrophila TaxID=71667 RepID=D6YV96_WADCW)

HSP 1 Score: 148 bits (373), Expect = 2.740e-38
Identity = 74/159 (46.54%), Postives = 107/159 (67.30%), Query Frame = 3
Query:  870 DDDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRRREGE 1346
            +D+ +M  AL+ A +A ++GEVP+GAIL +      +G+  V++ G N+VE  RDA+AHAEMLC+  A  A  NWRL G TLY T+EPC+MC  A  L RV  +V+GAP+   GA G WV+L  + H  HE++V+ G+LA+ CA+ ++ FF+ RR E +
Sbjct:   18 EDETYMLAALKEAWKAFVKGEVPVGAILVK------EGK--VIARGHNQVEMLRDATAHAEMLCITVAEAAEDNWRLNGATLYCTIEPCSMCAGAMLLSRVSTLVWGAPDIRHGANGSWVNLFGKPHPTHEIQVRNGILADFCAMLMQDFFKKRRLENK 168          
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Match: A0A0G4GWR4_VITBC (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWR4_VITBC)

HSP 1 Score: 148 bits (374), Expect = 3.370e-38
Identity = 80/182 (43.96%), Postives = 109/182 (59.89%), Query Frame = 3
Query:  873 DDRFMRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRDASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVVFGAPNPNLGACGGWVDLSSQ-RHAFHELEVKGGVLAEECALPLRGFFRSRRREGEIVPARDGVADAP*CSGIEVGRKG 1415
            D+R+MR+AL+ A  A   GEVPIGA+L        DG+  VLS GRN VE   DA+AHAE+ C++ A++    WRL   TLY T+EPC MC+ A QL R+  +V+GA +  +G  G WV L+++ +H FH++ V+GGV+A E    LR FFR  R       AR G +  P  +G   G  G
Sbjct:   24 DERYMRLALQQAAMAAERGEVPIGAVLV-------DGQGEVLSVGRNGVEAAHDATAHAELQCIREASQILGTWRLLNCTLYTTLEPCPMCVGAMQLARIHTLVYGASDNRMGGAGSWVSLATEPKHPFHQMAVRGGVMATEARQLLRTFFREAR-------ARRGASGVPSLTGEGRGGSG 191          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig144.2577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6H3_ECTSI1.520e-27990.87CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A6H5L744_9PHAE1.250e-27189.35CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S3Y7A9_HETAK1.180e-4352.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2TMM0_9EUKA1.280e-4148.95Hypothetical protein n=2 Tax=Lotharella oceanica T... [more]
A0A6M2AAF0_9BACT6.970e-4049.68tRNA-specific adenosine deaminase n=1 Tax=Chlamydi... [more]
A0A1M3BDS4_9CHLA2.070e-3947.62tRNA-specific adenosine deaminase n=1 Tax=Chlamydi... [more]
A0A2V3J170_9FLOR6.270e-3952.56tRNA-specific adenosine deaminase n=1 Tax=Gracilar... [more]
UPI000E765E042.660e-3850.31tRNA adenosine(34) deaminase TadA n=2 Tax=Shewanel... [more]
D6YV96_WADCW2.740e-3846.54tRNA-specific adenosine deaminase n=2 Tax=Waddlia ... [more]
A0A0G4GWR4_VITBC3.370e-3843.96CMP/dCMP-type deaminase domain-containing protein ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig144contigE-siliculosus-1a_F_contig144:59711..62447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1101
Model size1644
Exons4
Ec32 orthologEc-05_006200.1
Ec32 ortholog descriptionCytidine deaminase-like
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko04131,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.FJ
EC3.5.4.33
EggNOG OGsCOG0590@1,KOG1018@2759
EggNOG free text desc.deaminase activity
KEGG ModuleM00412
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ReactionR10223
KEGG koko:K11991,ko:K12193,ko:K15441
KEGG rclassRC00477
Seed eggNOG ortholog2880.D7G6H3
Seed ortholog evalue5.8e-176
Seed ortholog score623.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig144.2577.1prot_E-siliculosus-1a_F_contig144.2577.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig144 59970..62163 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.616802-UTR-E-siliculosus-1a_F_contig144:59710..599691622927951.616802-UTR-E-siliculosus-1a_F_contig144:59710..59969Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig144 59711..59969 -
1696318750.779445-UTR-E-siliculosus-1a_F_contig144:59710..599691696318750.779445-UTR-E-siliculosus-1a_F_contig144:59710..59969Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig144 59711..59969 -
1622927951.7331226-UTR-E-siliculosus-1a_F_contig144:62163..624471622927951.7331226-UTR-E-siliculosus-1a_F_contig144:62163..62447Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig144 62164..62447 -
1696318750.8254309-UTR-E-siliculosus-1a_F_contig144:62163..624471696318750.8254309-UTR-E-siliculosus-1a_F_contig144:62163..62447Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig144 62164..62447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.6328006-CDS-E-siliculosus-1a_F_contig144:59969..601941622927951.6328006-CDS-E-siliculosus-1a_F_contig144:59969..60194Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 59970..60194 -
1696318750.7942505-CDS-E-siliculosus-1a_F_contig144:59969..601941696318750.7942505-CDS-E-siliculosus-1a_F_contig144:59969..60194Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 59970..60194 -
1622927951.6548042-CDS-E-siliculosus-1a_F_contig144:60595..606881622927951.6548042-CDS-E-siliculosus-1a_F_contig144:60595..60688Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 60596..60688 -
1696318750.8018174-CDS-E-siliculosus-1a_F_contig144:60595..606881696318750.8018174-CDS-E-siliculosus-1a_F_contig144:60595..60688Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 60596..60688 -
1622927951.6709971-CDS-E-siliculosus-1a_F_contig144:61008..611371622927951.6709971-CDS-E-siliculosus-1a_F_contig144:61008..61137Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 61009..61137 -
1696318750.809619-CDS-E-siliculosus-1a_F_contig144:61008..611371696318750.809619-CDS-E-siliculosus-1a_F_contig144:61008..61137Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 61009..61137 -
1622927951.688133-CDS-E-siliculosus-1a_F_contig144:61509..621631622927951.688133-CDS-E-siliculosus-1a_F_contig144:61509..62163Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 61510..62163 -
1696318750.8175526-CDS-E-siliculosus-1a_F_contig144:61509..621631696318750.8175526-CDS-E-siliculosus-1a_F_contig144:61509..62163Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 61510..62163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig144.2577.1

>prot_E-siliculosus-1a_F_contig144.2577.1 ID=prot_E-siliculosus-1a_F_contig144.2577.1|Name=mRNA_E-siliculosus-1a_F_contig144.2577.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=367bp
MNHRAGDTVGFAHQTQGGSNRCRRKRQRRRQRLRLQTLGDIEIEAAEALS
TMEANIVEAESLGFETAIRPSTGVGAAVAPSIVENEANVANRKRRQRQQQ
QLLQVDGVVSTDEIATRDDVDTDLSRSGGKDVSCSGSGSFSEERSSASTR
TRPLATRGLEGSQPMAEQAETLLQGGHSIAVQENFASEVPKYSEEDDDRF
MRMALRLAGRARMEGEVPIGAILAETVPTRRDGRRRVLSTGRNEVEGRRD
ASAHAEMLCLQAAAKARSNWRLAGTTLYVTVEPCAMCLSAAQLFRVDRVV
FGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECALPLRGFFRSRR
REGEIVPARDGVADAP*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig144:59711..62447-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig144.2577.1 ID=mRNA_E-siliculosus-1a_F_contig144.2577.1|Name=mRNA_E-siliculosus-1a_F_contig144.2577.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2737bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig144:59711..62447- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCCACCAGTCTCGGGGCAGATCCGCGTGCATCGCCGGTCAGGAGCCCTG CCGGGAAGTCTGTCTCCACATCGTGACTCCGGGCGCCAAAGTGCCAAGGA CCATCCCACCACCTCTCGCCGGCGGAGAGGCCGATTGCGCAGCGGTAGCA CTGTCCACGACTGGCCGCTCTCGCCCCAGCGAAGCCCGTCGAGCACCCCC GATGTCGTCGATCGCGAGGAACAGGAGCCGGTAACCGCAGTGGCAAGTGT TGGGGCTTTGCGAAATGGTAGAAGTGGAGAAACGATGAATCATCGGGCCG GAGACACCGTAGGGTTTGCCCACCAGACACAAGGCGGAAGTAACCGATGC CGAAGAAAGCGGCAGCGGCGGCGACAGCGGTTGCGCCTGCAGACGTTAGG AGACATAGAGATAGAAGCCGCGGAGGCGTTGTCGACGATGGAGGCTAATA TCGTCGAGGCTGAGAGCTTGGGCTTTGAAACTGCAATTCGGCCGAGCACC GGCGTCGGAGCAGCGGTGGCACCTAGCATTGTAGAAAACGAGGCGAACGT TGCCAACAGGAAAAGACGACAGCGGCAGCAACAACAGCTGCTGCAGGTGG ATGGCGTCGTGTCCACGGACGAGATTGCCACTAGAGACGACGTGGACACC GACCTCTCCCGTTCTGGTGGGAAGGATGTGTCATGCTCAGGTTCTGGTTC GTTCTCTGAAGAACGCAGCAGTGCCAGCACCAGGACGAGGCCGTTGGCGA CACGGGGGTTGGAAGGCTCACAGCCGATGGCTGAGCAGGCGGAAACCCTG CTTCAAGGAGGGCATTCGATTGCCGTTCAAGAAAATTTCGCCTCAGAAGT CCCGAAGTATTCAGAGGAAGATGATGACCGATTTATGCGTATGGCTTTAC GGTTGGCAGGACGAGCCCGCATGGAGGGTGAAGTGCCGGTGAGTAACCCG CTTCGTTGTATCGCTTCGTCGAAGGACGAGCCCGCACAGCTGCAAGCCAC ACCCCCGTTGTTTTTTTTGTCATTTGTTGCGACTGACCTGCTGCGTTCAT GCGTTTGTGGCACGATAGGTTGGCGTTGCGGTATCGAGCTGGCCTTTGAT AGTATATTTGTTGCTCCCATGCATCCCAACCGCGTGGCCGTTAGGAAGCA TCGACAGGAAGGCCACGTGTGCTTCTTACAAGCCCACACGAAGCATTAAT AATCTGGTCCAAGTGGTTACAACTTCATCGATGCCAACCCCTACCCGTAG GCTAGCACCTTCATCCATCTGGTTGTGCACTTCCTTCTGTCGCATTGGGT ATTTGACCAGATCGGCGCTATTTTGGCGGAGACCGTGCCGACAAGGAGAG ATGGAAGGCGACGGGTGCTGTCGACCGGCAGAAACGAAGTGGAGGGGCGC CGTGACGCCTCGGCGCACGCCGAAATGCTGTGTCTCCAGGTGGGTCTATA TGGTTGAGGACCGAAACACATTGGTCGGATTGGCAGAAGAGCCAAACAGG GCTGACATGGAGTGTACTGCTGTCCAACCCAACTGCTCGCTCTTTGAGTG CCTTGTTGAGCATCACTTGGAGCAAACTTCCAACCTGCTGCGGAGTTTCC TTGGTCGGTGACACCCCAACCTAGAAGGCATTTTAACCACGAAAGGAATC AACTCGCACTTGCTACGTTCTGAGTGCGTCCGGTATTTTACGAACGCATG TCGTACCTTTCGGTTTTTCATGCGTACACGCTACATGCTCAACAACCCCA ACCCGCAAGGCGGCGGCGAAAGCACGGAGCAACTGGAGGCTTGCCGGGAC CACGCTCTATGTCACCGTGGAGCCGTGCGCTATGTGTCTTTCAGCCGCAC AGGTCAGAGCCAGCGCCGCAAATAAGTCCCGTTTATTGAAATGCTCCGAC CACCGTCGCAGTAGTATCAACTCATAGGAGATGATCTCGGTGAAGGACGC ATGCTCTCGCGATTTTGTCAACATGGAGTGGGGACGAGTATTGATGGCGC AATTTACGACCTGTCTTCGGGTTCCTGCAATTGCACGCCCCCGACCCACC AGATACGATTTTGACCTTACTTCTCCGAGTACGTAGACGGCTTGTGGGTT TCGGCTCCCGAATGCCCAGCCAGGCTCGTCACCTGGTACTCTTCTTCTCA GGAACGGGCTTAGTCTGACAAAACCGCAAATCTGGTTGATTTGTGTCATG GATGTCTCTCCAACCAGTGCCCCCGGCTTCCCTTTGTCGCGTTGCCGTCT CAGCTTTTCCGGGTGGATAGGGTGGTGTTCGGAGCCCCGAACCCTAACCT CGGGGCTTGTGGCGGCTGGGTGGACCTGTCCTCTCAAAGACATGCCTTTC ACGAGCTCGAAGTAAAGGGGGGCGTACTCGCGGAGGAGTGCGCGTTACCC TTGCGTGGATTTTTTCGCTCGAGGAGAAGAGAAGGGGAGATCGTGCCGGC CCGCGACGGTGTTGCTGACGCGCCGTGATGTTCGGGGATCGAGGTTGGGC GAAAGGGGGGATTAGTGGGAGGAGAAACAGGCGCAGGTTGCAATGTCTTT GGCTGAGATGAGTGATGGTGATGATGATGGTGGTGATGCATTTGGATTCG GACCAATTTTTTGTTGGAAACCGCTCGTTGTGGTGCCTGTCATGAGCAAT ATCGATAATGGCACAAAGGCCTGTTCGTGGCATTGACATGCAGTATCTGC CCATTCGGTGTAAACTTCCGTCCTAGCACACGCCGAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig144:59711..62447-

>mRNA_E-siliculosus-1a_F_contig144.2577.1 ID=mRNA_E-siliculosus-1a_F_contig144.2577.1|Name=mRNA_E-siliculosus-1a_F_contig144.2577.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2202bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig144:59711..62447- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAATCATCGGGCCGGAGACACCGTAGGGTTTGCCCACCAGACACAAGG
CGGAAGTAACCGATGCCGAAGAAAGCGGCAGCGGCGGCGACAGCGGTTGC
GCCTGCAGACGTTAGGAGACATAGAGATAGAAGCCGCGGAGGCGTTGTCG
ACGATGGAGGCTAATATCGTCGAGGCTGAGAGCTTGGGCTTTGAAACTGC
AATTCGGCCGAGCACCGGCGTCGGAGCAGCGGTGGCACCTAGCATTGTAG
AAAACGAGGCGAACGTTGCCAACAGGAAAAGACGACAGCGGCAGCAACAA
CAGCTGCTGCAGGTGGATGGCGTCGTGTCCACGGACGAGATTGCCACTAG
AGACGACGTGGACACCGACCTCTCCCGTTCTGGTGGGAAGGATGTGTCAT
GCTCAGGTTCTGGTTCGTTCTCTGAAGAACGCAGCAGTGCCAGCACCAGG
ACGAGGCCGTTGGCGACACGGGGGTTGGAAGGCTCACAGCCGATGGCTGA
GCAGGCGGAAACCCTGCTTCAAGGAGGGCATTCGATTGCCGTTCAAGAAA
ATTTCGCCTCAGAAGTCCCGAAGTATTCAGAGGAAGATGATGACCGATTT
ATGCGTATGGCTTTACGGTTGGCAGGACGAGCCCGCATGGAGGGTGAAGT
GCCGATGAATCATCGGGCCGGAGACACCGTAGGGTTTGCCCACCAGACAC
AAGGCGGAAGTAACCGATGCCGAAGAAAGCGGCAGCGGCGGCGACAGCGG
TTGCGCCTGCAGACGTTAGGAGACATAGAGATAGAAGCCGCGGAGGCGTT
GTCGACGATGGAGGCTAATATCGTCGAGGCTGAGAGCTTGGGCTTTGAAA
CTGCAATTCGGCCGAGCACCGGCGTCGGAGCAGCGGTGGCACCTAGCATT
GTAGAAAACGAGGCGAACGTTGCCAACAGGAAAAGACGACAGCGGCAGCA
ACAACAGCTGCTGCAGGTGGATGGCGTCGTGTCCACGGACGAGATTGCCA
CTAGAGACGACGTGGACACCGACCTCTCCCGTTCTGGTGGGAAGGATGTG
TCATGCTCAGGTTCTGGTTCGTTCTCTGAAGAACGCAGCAGTGCCAGCAC
CAGGACGAGGCCGTTGGCGACACGGGGGTTGGAAGGCTCACAGCCGATGG
CTGAGCAGGCGGAAACCCTGCTTCAAGGAGGGCATTCGATTGCCGTTCAA
GAAAATTTCGCCTCAGAAGTCCCGAAGTATTCAGAGGAAGATGATGACCG
ATTTATGCGTATGGCTTTACGGTTGGCAGGACGAGCCCGCATGGAGGGTG
AAGTGCCGATCGGCGCTATTTTGGCGGAGACCGTGCCGACAAGGAGAGAT
GGAAGGCGACGGGTGCTGTCGACCGGCAGAAACGAAGTGGAGGGGCGCCG
TGACGCCTCGGCGCACGCCGAAATGCTGTGTCTCCAGATCGGCGCTATTT
TGGCGGAGACCGTGCCGACAAGGAGAGATGGAAGGCGACGGGTGCTGTCG
ACCGGCAGAAACGAAGTGGAGGGGCGCCGTGACGCCTCGGCGCACGCCGA
AATGCTGTGTCTCCAGGCGGCGGCGAAAGCACGGAGCAACTGGAGGCTTG
CCGGGACCACGCTCTATGTCACCGTGGAGCCGTGCGCTATGTGTCTTTCA
GCCGCACAGGCGGCGGCGAAAGCACGGAGCAACTGGAGGCTTGCCGGGAC
CACGCTCTATGTCACCGTGGAGCCGTGCGCTATGTGTCTTTCAGCCGCAC
AGCTTTTCCGGGTGGATAGGGTGGTGTTCGGAGCCCCGAACCCTAACCTC
GGGGCTTGTGGCGGCTGGGTGGACCTGTCCTCTCAAAGACATGCCTTTCA
CGAGCTCGAAGTAAAGGGGGGCGTACTCGCGGAGGAGTGCGCGTTACCCT
TGCGTGGATTTTTTCGCTCGAGGAGAAGAGAAGGGGAGATCGTGCCGGCC
CGCGACGGTGTTGCTGACGCGCCGTGACTTTTCCGGGTGGATAGGGTGGT
GTTCGGAGCCCCGAACCCTAACCTCGGGGCTTGTGGCGGCTGGGTGGACC
TGTCCTCTCAAAGACATGCCTTTCACGAGCTCGAAGTAAAGGGGGGCGTA
CTCGCGGAGGAGTGCGCGTTACCCTTGCGTGGATTTTTTCGCTCGAGGAG
AAGAGAAGGGGAGATCGTGCCGGCCCGCGACGGTGTTGCTGACGCGCCGT
GA
back to top