mRNA_E-siliculosus-1a_F_contig144.2575.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig144.2575.1
Unique NamemRNA_E-siliculosus-1a_F_contig144.2575.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig144.2575.1 vs. uniprot
Match: D7G6H2_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H2_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 1.710e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:  130 MLGSVDARRGELSAVVRIRSPANSSE 207
            MLGSVDARRGELSAVVRIRSPANSSE
Sbjct:    1 MLGSVDARRGELSAVVRIRSPANSSE 26
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig144.2575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6H2_ECTSI1.710e-5100.00Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig144contigE-siliculosus-1a_F_contig144:48167..49574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size207
Model size208
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927950.1695113-CDS-E-siliculosus-1a_F_contig144:48166..483181622927950.1695113-CDS-E-siliculosus-1a_F_contig144:48166..48318Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 48167..48318 +
1696318750.181718-CDS-E-siliculosus-1a_F_contig144:48166..483181696318750.181718-CDS-E-siliculosus-1a_F_contig144:48166..48318Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 48167..48318 +
1622927950.1856914-CDS-E-siliculosus-1a_F_contig144:49519..495741622927950.1856914-CDS-E-siliculosus-1a_F_contig144:49519..49574Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 49520..49574 +
1696318750.189764-CDS-E-siliculosus-1a_F_contig144:49519..495741696318750.189764-CDS-E-siliculosus-1a_F_contig144:49519..49574Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig144 49520..49574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig144.2575.1prot_E-siliculosus-1a_F_contig144.2575.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig144 48167..49574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig144.2575.1

>prot_E-siliculosus-1a_F_contig144.2575.1 ID=prot_E-siliculosus-1a_F_contig144.2575.1|Name=mRNA_E-siliculosus-1a_F_contig144.2575.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=69bp
VRKVVGFGRQRASTVAGRNLPAAWCVQVVPDCNYCYSSRNRREMLGSVDA
RRGELSAVVRIRSPANSSE
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mRNA from alignment at E-siliculosus-1a_F_contig144:48167..49574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig144.2575.1 ID=mRNA_E-siliculosus-1a_F_contig144.2575.1|Name=mRNA_E-siliculosus-1a_F_contig144.2575.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1408bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig144:48167..49574+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCCGCAAGGTTGTGGGTTTCGGTCGTCAGCGAGCCAGCACCGTCGCAGG
CCGCAATCTGCCAGCCGCATGGTGCGTGCAAGTCGTTCCCGACTGTAACT
ATTGTTACAGCTCTAGGAATAGAAGGGAGATGCTTGGATCAGTGGACGCC
AGGTTAGTTGTGTCGATCAACGGCGCGAACAAAATTTGCATGCGGCGTGA
TTCCACAGCAGACAGAGCTTTCCGTTTTGGGGTGTTCGAGCGCGTACCAG
CGTCGCAGCAGTACGGTAGCTGCGCAGGGTGGTGTTTGGCAGCTGCCGGG
GTACTATTATCGCCGTTCTGTAGCGAGCTTCGAGCGATCCTTGGAGGGCA
GCCATGCATTAGGTCTCGAAGTATGTGTTACAGATCGCTGGACGACGTTA
TCAGGTATCAGCGTCGTGGTATGTTGTTCCGTCCCTCGTGTAACGGAAAA
AGCTCGGCCGAGGGATGCGCGGCGCACGACGGTAGTGCTTGTGGAAATAC
CCACCATTGTCTTCGAGGGGTAGCATCGCTCGTAGTTTGCAGCGCCCACG
TCCCCCCAAACCTGGCGTGGTTGACGCGCGCACACACACCTCCAGGAGGA
AGTTATTGTGTGGAATGTGTGTGTCGAGAATCAGAACTTCGGACTCTACT
CTACCCTCGTAGGTTTACTGCTGCGCCTAGAGGAAGGCACACGTGGGTGT
GGAGAAGGTAGAGAGGTAGTAAGTCAGCAGTGGTAACACGGTGTTCTCTG
TCCGTAAATGAGCAATAACACTCTTCGGAACACCAGGCCACCACAAAGCT
ACAGTGAGCTGGATTGAATTCCCATGCCCCCTTGACCGCCGTTGTGAAAT
GAGTTCAGATGCTAATGTTGTTGCAACATGAAAACCAATATCAAACTCTG
TTCCGACCTCTACTACAGTACAGCGCTTCATCTTTCCTCTTCGTGAAAGT
TTTCGTCTTCACAAGATAAAAGTCTGCTGTAGGCCACCCATTCACTCATA
ACTCATGTTCCAACGTGCACGAACAGGCAGTCCAGAGTGTCTTGTGTGCC
CGATGTGCGGTGTCACAAACCACGCCGAAACATTCTTGCTCTCTATTAGA
GCCTGCTTTTTGTGCCTTCGACCTCGTCCTACTGTAGCCGGAATGACGAC
AACGTCGGGATGCGTACATGGTCATCGAGTCGTTTCGATTTCTCCGTCGT
TGCCGAATGCAAATGTTCTTGGTGCTGTCTCTCCCTCTCTGCCTTCCTCG
GATCTACAACCAAGCACGGCAGGGTCCCTCAGTGGATGTTTTTCAGTTTT
GGTGCTTACCCCTTATGCCCTGTACTCCTTTGCATCCGCGTCGATAAAAA
CAGGAGAGGGGAGCTCTCGGCCGTCGTTCGGATACGGAGCCCGGCGAACT
CTTCCGAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig144:48167..49574+

>mRNA_E-siliculosus-1a_F_contig144.2575.1 ID=mRNA_E-siliculosus-1a_F_contig144.2575.1|Name=mRNA_E-siliculosus-1a_F_contig144.2575.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig144:48167..49574+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCCGCAAGGTTGTGGGTTTCGGTCGTCAGCGAGCCAGCACCGTCGCAGG
CCGCAATCTGCCAGCCGCATGGTGCGTGCAAGTCGTTCCCGACTGTAACT
ATTGTTACAGCTCTAGGAATAGAAGGGAGATGCTTGGATCAGTGGACGCC
AGGTCCGCAAGGTTGTGGGTTTCGGTCGTCAGCGAGCCAGCACCGTCGCA
GGCCGCAATCTGCCAGCCGCATGGTGCGTGCAAGTCGTTCCCGACTGTAA
CTATTGTTACAGCTCTAGGAATAGAAGGGAGATGCTTGGATCAGTGGACG
CCAGGAGAGGGGAGCTCTCGGCCGTCGTTCGGATACGGAGCCCGGCGAAC
TCTTCCGAAGAGAGGGGAGCTCTCGGCCGTCGTTCGGATACGGAGCCCGG
CGAACTCTTCCGAA
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