mRNA_E-siliculosus-1a_F_contig144.2571.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig144.2571.1 vs. uniprot
Match: A0A6H5L6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z7_9PHAE) HSP 1 Score: 1193 bits (3086), Expect = 0.000e+0 Identity = 1039/1207 (86.08%), Postives = 1054/1207 (87.32%), Query Frame = 2
Query: 206 MQHEADMMLSSSTNRWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPATAARPSATNAAWVVKPASYSLPXXXXXXXXXXXXXXXXXXXXSSTELHLAEGRQLSLAPGQQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLSVPRRHPSSASAGGGSLIGTSGRDVPAEIVTXXXXXXXXXXXXXXXXXXXDDHLSDGGIGFKVEYYERVPPAVSWGGGANGGEGDXXXXAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAAFFCLLSLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANMLLAVRAIAAKMALDDYGLDEISALFSGAKMTAGLQCLILLVVEVPRAAGGLSPRLLPHLWGVGVMEIDHQQPGGAVVSGEGAGIGVGEAGDWGEGRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAISSGYARAALVFVLLLALRGSAAGPRIVGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADGLPCDADDGGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPGLFVPLLGTKLGDRRRGLDGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPPSGFAWRWMGLRPSETTATPPAVSAAGQLVDKQXXXXXXRLEDGVGGVGIEGNFGFPSRQPRHHGGSEVLSPPAAFGGFAAEADATASAASFATDCSRGQDGGGYAREDRRKARNPQTGNHDFPAETFVGVEGTVETAPRRFGAPSPGSQQPYPPVSASSNXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRWGEGPSEGVPPPAGRRGSGHGLGRPAAGVPRPFRRLGGDSVVGPREEEGGVAAGFRGATVGGGSRGLPTRDGGEGGAGGREVSGSTGATLSSPSTSSSSFSLNGFEVIDKEEDMWT 3826
MQHEADMMLSSSTNRWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LPATA RP ATNAAWVVKPASYSLP XXXXX S TELH AE +QLSLAPGQQP XXXXXXXXXXXXXXXXXXXX A GTIATLILASL+TYALYNASVEALAGQRTRLS+PRRHPSSASAGG SLIGTSGRDVPAEIVT XXXXXXXXXXXXXX DDHLSDGGIGFKVEYYERVP AVSWGGGANG XXXXAVAGWGKGVSVVTVSAWQTLAALG GFLMSRFWRRFRRPEVRALSD ERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAA FCLLSLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAAN+LLAVRAIAAKMALDDYGLDEISALFSGA MTAGLQ LILLVVEVPRAA GLSPRLLPHLWGVGVMEID QQPGG V+SGEGAGIGVG+AGDWGEGRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAISSGY AALVFVLLLALRGSAAGPR+VGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADGLPCDADDGGEAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXX KPGLFVPLLGTKLGDRRRG+DGSGXXXXXXXXXXXXXXXXXXXXXXXXX GAPPSGFAWRWMGLRPSE+ TPP VSAAGQL DK+ RLEDGVG VGI+GNFG PSRQ HHGGSEVLSPPAAF ATASA SFA D SRGQDGG YA E RRKAR+PQ+GNHDFP ETFVGVEGTVETAPRRFGAPSPGSQQPYPPVSA XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RWGE PSEGV PAGRRGSGHGLG AAGVPRPFRRLGGD V GPREEEGG+AAGFRGATVGGGSRGL T DG EGGAGGR+VSG TGATLSSPSTSSSSFSLNGFEVIDKEEDMWT
Sbjct: 1 MQHEADMMLSSSTNRWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHLPATATRPFATNAAWVVKPASYSLPPSNTTAAAXXXXXPARAPPSSLTELHPAEDQQLSLAPGQQPPSQQPQAGGRRRQGRGGYRGSIPSPPPLATQQFETCRQQXXXXXXXXXXXXXXXXXXXXXXXXXA--GTIATLILASLITYALYNASVEALAGQRTRLSIPRRHPSSASAGGASLIGTSGRDVPAEIVTTGXXXXXXXXXXXXXXEDEDDHLSDGGIGFKVEYYERVPTAVSWGGGANGXXXXXXXXAVAGWGKGVSVVTVSAWQTLAALGFGFLMSRFWRRFRRPEVRALSDGERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAACFCLLSLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANILLAVRAIAAKMALDDYGLDEISALFSGATMTAGLQSLILLVVEVPRAAAGLSPRLLPHLWGVGVMEIDRQQPGGPVLSGEGAGIGVGDAGDWGEGRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAISSGYVHAALVFVLLLALRGSAAGPRMVGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADGLPCDADDGGEAGGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCRPAVGMTAXXXXXXX--KPGLFVPLLGTKLGDRRRGVDGSGXXXXXXXXXXXXXXXXXXXXXXXXXDGDGAPPSGFAWRWMGLRPSESAVTPPVVSAAGQLADKRQQQQ--RLEDGVGDVGIDGNFGLPSRQLDHHGGSEVLSPPAAF--------ATASADSFAADGSRGQDGGDYACEGRRKARSPQSGNHDFPTETFVGVEGTVETAPRRFGAPSPGSQQPYPPVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RWGEEPSEGVSLPAGRRGSGHGLGGTAAGVPRPFRRLGGDYVAGPREEEGGIAAGFRGATVGGGSRGLRTEDG-EGGAGGRQVSG-TGATLSSPSTSSSSFSLNGFEVIDKEEDMWT 1189
BLAST of mRNA_E-siliculosus-1a_F_contig144.2571.1 vs. uniprot
Match: D7G6G9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G9_ECTSI) HSP 1 Score: 830 bits (2145), Expect = 1.360e-279 Identity = 566/732 (77.32%), Postives = 570/732 (77.87%), Query Frame = 2
Query: 89 QVGQRPRLTNPSGKRWRSGRREAIQHIPPRGKQ*Q*GAVMQHEADMMLSSSTNRWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPATAARPSATNAAWVVKPASYSLPXXXXXXXXXXXXXXXXXXXXSSTELHLAEGRQLSLAPGQQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLSVPRRHPSSASAGGGSLIGTSGRDVPAEIVTXXXXXXXXXXXXXXXXXXXDDHLSDGGIGFKVEYYERVPPAVSWGGGANGGEGDXXXXAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAAFFCLLSLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANMLLAVRAIAAKMALDDYGLDEISALFSGAKMTAGLQCLILLVVEVPRAAGGLSPRLLPHLWGVGVMEIDHQQPGGAVVSGEGAGIGVGEAGDWGEGRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAISSGYARAALVFVLLLALRGSAAGPRIVGMSLATLAVSAHFYRAYVRGRATSSLLNSADNADGLPCDADDGGEAG 2284
Q G+RPRLTNPSG RWRSGRREA GA S ++ WR LPATAARP ATNAAWVVKPASYSLP SSTELHLAEGRQLSLAPGQQP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLSVPRRHPSSASA GGSLIGTSGRDVPAEI T XXXXXXXX DDHLSDGGIG KVEYYERVPPAVSWGGGANGGE XX AVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAAFFCLLSLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANMLLAVRAIAAKMALDDYGLDEISALFSGAKMTAGLQCLILLVVEVPRAA GLSPRLLPHLWGVGVMEID QQPGG VVSGEGAGIGVGEAGDWGEGRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAIS RGSAAGPRIVGMSLATLAVSAHFYRAYVRGRATSSLLNS DNA+GLPCDADDGGEAG
Sbjct: 32 QGGERPRLTNPSGTRWRSGRREAG------------GATSG-------GSGSSSWRSTNTAAADRQHLDPPPAEAVGAHSSRTGAEQQPHQFYYPATAGVSGGGHH---------------------LPATAARPLATNAAWVVKPASYSLPPPNATALAVTAAAPAHAPPPSSTELHLAEGRQLSLAPGQQPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NGRGSASAGTIATLILASLLTYALYNASVEALAGQRTRLSVPRRHPSSASARGGSLIGTSGRDVPAEIGTTGGAXXXXXXXXTALLEDEDDHLSDGGIGSKVEYYERVPPAVSWGGGANGGEXXXXGAAVAGWGKGVSVVTVSAWQTLAALGVGFLMSRFWRRFRRPEVRALSDAERTRRNKFLLVFAAAHLAGTGLEYHGYGVIGAAAAEVLRSTEAAFFCLLSLNVGMQRPGLASVPTLLLALGLALAATPTAGDLRAGWGGLRASLAANMLLAVRAIAAKMALDDYGLDEISALFSGAKMTAGLQCLILLVVEVPRAAAGLSPRLLPHLWGVGVMEIDQQQPGGPVVSGEGAGIGVGEAGDWGEGRERARLACLLLANGVFLYGHLLVLFALLSRLSATMFAIS----------------RGSAAGPRIVGMSLATLAVSAHFYRAYVRGRATSSLLNSGDNAEGLPCDADDGGEAG 705 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig144.2571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig144.2571.1 >prot_E-siliculosus-1a_F_contig144.2571.1 ID=prot_E-siliculosus-1a_F_contig144.2571.1|Name=mRNA_E-siliculosus-1a_F_contig144.2571.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1208bp MQHEADMMLSSSTNRWRKRPPNQAGGATGGGSGSSSRRSPNTAAADRRHLback to top mRNA from alignment at E-siliculosus-1a_F_contig144:15924..25704- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig144.2571.1 ID=mRNA_E-siliculosus-1a_F_contig144.2571.1|Name=mRNA_E-siliculosus-1a_F_contig144.2571.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9781bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig144:15924..25704- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig144:15924..25704- >mRNA_E-siliculosus-1a_F_contig144.2571.1 ID=mRNA_E-siliculosus-1a_F_contig144.2571.1|Name=mRNA_E-siliculosus-1a_F_contig144.2571.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=7248bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig144:15924..25704- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |