mRNA_E-siliculosus-1a_F_contig1439.2567.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1439.2567.1
Unique NamemRNA_E-siliculosus-1a_F_contig1439.2567.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1439.2567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1439contigE-siliculosus-1a_F_contig1439:30172..31235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1050
Model size1050
Exons2
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927950.0159729-CDS-E-siliculosus-1a_F_contig1439:30171..304841622927950.0159729-CDS-E-siliculosus-1a_F_contig1439:30171..30484Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1439 30172..30484 +
1696318750.1356483-CDS-E-siliculosus-1a_F_contig1439:30171..304841696318750.1356483-CDS-E-siliculosus-1a_F_contig1439:30171..30484Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1439 30172..30484 +
1622927950.0337198-CDS-E-siliculosus-1a_F_contig1439:30498..312351622927950.0337198-CDS-E-siliculosus-1a_F_contig1439:30498..31235Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1439 30499..31235 +
1696318750.152103-CDS-E-siliculosus-1a_F_contig1439:30498..312351696318750.152103-CDS-E-siliculosus-1a_F_contig1439:30498..31235Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1439 30499..31235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1439.2567.1prot_E-siliculosus-1a_F_contig1439.2567.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1439 30172..31235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1439.2567.1

>prot_E-siliculosus-1a_F_contig1439.2567.1 ID=prot_E-siliculosus-1a_F_contig1439.2567.1|Name=mRNA_E-siliculosus-1a_F_contig1439.2567.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=350bp
RRLPPRQGLVSGLLQRLLRQPPPLRHQGLVLELLLRRKQQRLPQQRQPRQ
HQGLASEPPLPRHHQQRQRLPQPLQHQGLASEPLLPQQRQQQRLPQQQQP
LPHQAAAAATSSAATAAPAPASKTASTGLSFGTPAPATSSATAPAPGAAA
PSGFSFGAAAPATSSTAAAPAPAASTAAASGFSFGAAAPAAATAAAPAPA
KTAPSGFSFGAATPATSAAPAAAAATSFSFGGSATAAPAAKPAATTAAST
GLSFGSAAPATPSATAPATAQAKAAPAGFSFGAPAPATSAAPAAAAASSS
ALGAAAAPATTTTTPAAATAPSFSFGASTTTPAPAVNKPAAATAVATTSS
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mRNA from alignment at E-siliculosus-1a_F_contig1439:30172..31235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1439.2567.1 ID=mRNA_E-siliculosus-1a_F_contig1439.2567.1|Name=mRNA_E-siliculosus-1a_F_contig1439.2567.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1064bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1439:30172..31235+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGCGACTACCGCCTCGTCAGGGTTTAGTTTCGGGTCTGCTGCAGCGGCT
GCTCCGGCAACCGCCACCCCTGCGGCATCAGGGTTTAGTATTGGAGCTGC
TGCTCCGGCGAAAGCAGCAGCGCCTGCCCCAGCAGCGACAACCCCGGCAG
CATCAGGGTTTAGCTTCGGAGCCGCCGCTCCCGCGACATCATCAACAGCG
GCAGCGCCTGCCCCAGCCGCTGCAGCATCAGGGTTTAGCTTCGGAGCCGT
TGCTCCCCCAGCAGCGACAGCAGCAGCGCCTGCCCCAGCAGCAACAACCG
CTGCCGCATCAGGGTTTAGCTTCGGAGCTGCTGCTGCCGCGACGTCATCG
GCAGCAACAGCAGCACCTGCCCCGGCATCGAAAACGGCGTCGACTGGCCT
AAGCTTTGGTACTCCCGCGCCTGCAACATCATCGGCAACGGCGCCTGCTC
CAGGCGCAGCCGCTCCTTCAGGGTTCAGTTTTGGAGCTGCTGCTCCGGCG
ACGTCATCGACAGCAGCAGCACCTGCCCCAGCAGCAAGCACCGCTGCCGC
ATCAGGGTTCAGTTTTGGCGCCGCCGCTCCCGCAGCAGCGACAGCAGCAG
CCCCTGCTCCAGCAAAAACGGCTCCATCAGGGTTTAGCTTTGGTGCTGCC
ACCCCCGCAACATCGGCGGCCCCAGCGGCAGCCGCAGCGACGTCATTTAG
CTTTGGGGGGTCGGCGACGGCTGCGCCTGCTGCGAAACCGGCCGCCACTA
CCGCCGCTTCGACCGGGCTCAGCTTTGGATCCGCCGCTCCCGCGACACCA
TCGGCAACGGCCCCTGCTACTGCTCAGGCGAAGGCTGCCCCAGCGGGATT
TAGCTTTGGAGCCCCCGCACCCGCGACATCGGCCGCCCCGGCAGCGGCGG
CTGCTTCTTCATCGGCGTTAGGAGCTGCTGCTGCTCCCGCAACAACGACG
ACCACCCCCGCAGCAGCAACTGCTCCTTCGTTTAGCTTCGGAGCTTCGAC
GACGACGCCGGCACCTGCCGTCAATAAACCGGCCGCCGCCACCGCCGTGG
CAACGACGTCGAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1439:30172..31235+

>mRNA_E-siliculosus-1a_F_contig1439.2567.1 ID=mRNA_E-siliculosus-1a_F_contig1439.2567.1|Name=mRNA_E-siliculosus-1a_F_contig1439.2567.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2100bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1439:30172..31235+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGCGACTACCGCCTCGTCAGGGTTTAGTTTCGGGTCTGCTGCAGCGGCT
GCTCCGGCAACCGCCACCCCTGCGGCATCAGGGTTTAGTATTGGAGCTGC
TGCTCCGGCGAAAGCAGCAGCGCCTGCCCCAGCAGCGACAACCCCGGCAG
CATCAGGGTTTAGCTTCGGAGCCGCCGCTCCCGCGACATCATCAACAGCG
GCAGCGCCTGCCCCAGCCGCTGCAGCATCAGGGTTTAGCTTCGGAGCCGT
TGCTCCCCCAGCAGCGACAGCAGCAGCGCCTGCCCCAGCAGCAACAACCG
CTGCCGCATCAGGCGGCGACTACCGCCTCGTCAGGGTTTAGTTTCGGGTC
TGCTGCAGCGGCTGCTCCGGCAACCGCCACCCCTGCGGCATCAGGGTTTA
GTATTGGAGCTGCTGCTCCGGCGAAAGCAGCAGCGCCTGCCCCAGCAGCG
ACAACCCCGGCAGCATCAGGGTTTAGCTTCGGAGCCGCCGCTCCCGCGAC
ATCATCAACAGCGGCAGCGCCTGCCCCAGCCGCTGCAGCATCAGGGTTTA
GCTTCGGAGCCGTTGCTCCCCCAGCAGCGACAGCAGCAGCGCCTGCCCCA
GCAGCAACAACCGCTGCCGCATCAGGCTGCTGCTGCCGCGACGTCATCGG
CAGCAACAGCAGCACCTGCCCCGGCATCGAAAACGGCGTCGACTGGCCTA
AGCTTTGGTACTCCCGCGCCTGCAACATCATCGGCAACGGCGCCTGCTCC
AGGCGCAGCCGCTCCTTCAGGGTTCAGTTTTGGAGCTGCTGCTCCGGCGA
CGTCATCGACAGCAGCAGCACCTGCCCCAGCAGCAAGCACCGCTGCCGCA
TCAGGGTTCAGTTTTGGCGCCGCCGCTCCCGCAGCAGCGACAGCAGCAGC
CCCTGCTCCAGCAAAAACGGCTCCATCAGGGTTTAGCTTTGGTGCTGCCA
CCCCCGCAACATCGGCGGCCCCAGCGGCAGCCGCAGCGACGTCATTTAGC
TTTGGGGGGTCGGCGACGGCTGCGCCTGCTGCGAAACCGGCCGCCACTAC
CGCCGCTTCGACCGGGCTCAGCTTTGGATCCGCCGCTCCCGCGACACCAT
CGGCAACGGCCCCTGCTACTGCTCAGGCGAAGGCTGCCCCAGCGGGATTT
AGCTTTGGAGCCCCCGCACCCGCGACATCGGCCGCCCCGGCAGCGGCGGC
TGCTTCTTCATCGGCGTTAGGAGCTGCTGCTGCTCCCGCAACAACGACGA
CCACCCCCGCAGCAGCAACTGCTCCTTCGTTTAGCTTCGGAGCTTCGACG
ACGACGCCGGCACCTGCCGTCAATAAACCGGCCGCCGCCACCGCCGTGGC
AACGACGTCGAGCCTGCTGCTGCCGCGACGTCATCGGCAGCAACAGCAGC
ACCTGCCCCGGCATCGAAAACGGCGTCGACTGGCCTAAGCTTTGGTACTC
CCGCGCCTGCAACATCATCGGCAACGGCGCCTGCTCCAGGCGCAGCCGCT
CCTTCAGGGTTCAGTTTTGGAGCTGCTGCTCCGGCGACGTCATCGACAGC
AGCAGCACCTGCCCCAGCAGCAAGCACCGCTGCCGCATCAGGGTTCAGTT
TTGGCGCCGCCGCTCCCGCAGCAGCGACAGCAGCAGCCCCTGCTCCAGCA
AAAACGGCTCCATCAGGGTTTAGCTTTGGTGCTGCCACCCCCGCAACATC
GGCGGCCCCAGCGGCAGCCGCAGCGACGTCATTTAGCTTTGGGGGGTCGG
CGACGGCTGCGCCTGCTGCGAAACCGGCCGCCACTACCGCCGCTTCGACC
GGGCTCAGCTTTGGATCCGCCGCTCCCGCGACACCATCGGCAACGGCCCC
TGCTACTGCTCAGGCGAAGGCTGCCCCAGCGGGATTTAGCTTTGGAGCCC
CCGCACCCGCGACATCGGCCGCCCCGGCAGCGGCGGCTGCTTCTTCATCG
GCGTTAGGAGCTGCTGCTGCTCCCGCAACAACGACGACCACCCCCGCAGC
AGCAACTGCTCCTTCGTTTAGCTTCGGAGCTTCGACGACGACGCCGGCAC
CTGCCGTCAATAAACCGGCCGCCGCCACCGCCGTGGCAACGACGTCGAGC
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