mRNA_E-siliculosus-1a_F_contig14372.2564.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14372.2564.1
Unique NamemRNA_E-siliculosus-1a_F_contig14372.2564.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14372.2564.1 vs. uniprot
Match: D8LJ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ22_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 2.220e-73
Identity = 121/132 (91.67%), Postives = 122/132 (92.42%), Query Frame = 1 
Query:    1 MRLVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNARASGSGGGGSAGPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAGHPVNAPAKELLALLESLVLRCASSK 396
            MRLVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNARASG       GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLA HPVNAPAKELLALLESLVLR A S+
Sbjct:    1 MRLVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNARASGXXXXXX-GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLALLESLVLRAARSR 131
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BLAST of mRNA_E-siliculosus-1a_F_contig14372.2564.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 2.070e-55
Identity = 105/120 (87.50%), Postives = 106/120 (88.33%), Query Frame = 1 
Query:   43 LHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNARASGSGGGGSA--GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAGHPVNAPAKELLALLESLVLRCASSK 396
            LHRL LVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLN ARASG         GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLA HPVNAPAKELLALLESLVLR A S+
Sbjct:  826 LHRLSLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNTARASGXXXXXXXXXGPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLALLESLVLRAARSR 945
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14372.2564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ22_ECTSI2.220e-7391.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I3_9PHAE2.070e-5587.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14372contigE-siliculosus-1a_F_contig14372:189..1023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size399
Model size399
Exons2
Ec32 orthologEc-02_004430.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927949.7860508-CDS-E-siliculosus-1a_F_contig14372:188..5451622927949.7860508-CDS-E-siliculosus-1a_F_contig14372:188..545Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14372 189..545 -
1696318750.0177228-CDS-E-siliculosus-1a_F_contig14372:188..5451696318750.0177228-CDS-E-siliculosus-1a_F_contig14372:188..545Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14372 189..545 -
1622927949.8008492-CDS-E-siliculosus-1a_F_contig14372:981..10231622927949.8008492-CDS-E-siliculosus-1a_F_contig14372:981..1023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14372 982..1023 -
1696318750.0258377-CDS-E-siliculosus-1a_F_contig14372:981..10231696318750.0258377-CDS-E-siliculosus-1a_F_contig14372:981..1023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14372 982..1023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14372.2564.1prot_E-siliculosus-1a_F_contig14372.2564.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14372 189..1023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14372.2564.1

>prot_E-siliculosus-1a_F_contig14372.2564.1 ID=prot_E-siliculosus-1a_F_contig14372.2564.1|Name=mRNA_E-siliculosus-1a_F_contig14372.2564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=133bp
MRLVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIV
RNLTLLNNARASGSGGGGSAGPDGSAEEAIAKESAALCDNTVVLDGEGMR
SALRLAGHPVNAPAKELLALLESLVLRCASSKL
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mRNA from alignment at E-siliculosus-1a_F_contig14372:189..1023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14372.2564.1 ID=mRNA_E-siliculosus-1a_F_contig14372.2564.1|Name=mRNA_E-siliculosus-1a_F_contig14372.2564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=835bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14372:189..1023- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGATTGGTCCGCGCGAAGTTCCTGAAGGATTTCGCTCCGGTGGGTGT
CTTCTCTTGTTGTTTAGGCAAATGTGTGTGTGGCGGGCGGGGCGTAGTGT
TGTTGTTGACGAGGAGGGCGTTTTTGCTCCCTAGGGGTGGTTGGATGCTT
GTGTATGGCTTGTCGATATCTCGGGGTCTAATGGAGGAAATAAGGTTTTT
CACGCCCTCGCGCCAACATTTTGTTGTGGTTTCTGGGATGGTAGTGTTCA
CAGAGGTTACGCTCGAACCGTTTATTGTAGCTAGCATCTGATGTACTGCT
CTGTAGACCCAATCGGTGTCACCAAAATGTACTGCTCTGTAGACCCAATC
GGTGTCACCAAAATGTACTGCTCTGTAGACCCAATCGGTGTCACCAATAT
GTACTGCTCTGTAGACCCAATCGGTGTCACCAACGGATGCGTTTCTCAGA
CCACCGTCTCTCTCTTGCTCACAAACAGCTCCACCGCCTGGGCCTGGTAT
GGTGCGAGCGCGCCGCGCCCCCCCTCCTCCTAGCCGACGACTCCGGTGAG
GGGGGCAGCCTGTGGCGCGACTGCCTCGCCATCGTGCGGAACCTGACGCT
GTTGAACAACGCCCGGGCTAGCGGTAGCGGCGGCGGCGGCAGCGCGGGCC
CGGACGGTTCGGCGGAGGAGGCCATCGCGAAGGAGTCGGCGGCGCTGTGC
GACAACACGGTTGTCCTCGATGGGGAAGGGATGAGGTCAGCGCTGAGGCT
GGCGGGGCACCCGGTCAACGCGCCCGCCAAGGAGCTGCTCGCGTTGCTGG
AGTCTCTGGTCCTCAGGTGTGCGAGCAGCAAGCTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14372:189..1023-

>mRNA_E-siliculosus-1a_F_contig14372.2564.1 ID=mRNA_E-siliculosus-1a_F_contig14372.2564.1|Name=mRNA_E-siliculosus-1a_F_contig14372.2564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=798bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14372:189..1023- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGATTGGTCCGCGCGAAGTTCCTGAAGGATTTCGCTCCGATGAGATT
GGTCCGCGCGAAGTTCCTGAAGGATTTCGCTCCGCTCCACCGCCTGGGCC
TGGTATGGTGCGAGCGCGCCGCGCCCCCCCTCCTCCTAGCCGACGACTCC
GGTGAGGGGGGCAGCCTGTGGCGCGACTGCCTCGCCATCGTGCGGAACCT
GACGCTGTTGAACAACGCCCGGGCTAGCGGTAGCGGCGGCGGCGGCAGCG
CGGGCCCGGACGGTTCGGCGGAGGAGGCCATCGCGAAGGAGTCGGCGGCG
CTGTGCGACAACACGGTTGTCCTCGATGGGGAAGGGATGAGGTCAGCGCT
GAGGCTGGCGGGGCACCCGGTCAACGCGCCCGCCAAGGAGCTGCTCGCGT
TGCTGGAGTCTCTGGTCCTCAGGTGTGCGAGCAGCAAGCTGCTCCACCGC
CTGGGCCTGGTATGGTGCGAGCGCGCCGCGCCCCCCCTCCTCCTAGCCGA
CGACTCCGGTGAGGGGGGCAGCCTGTGGCGCGACTGCCTCGCCATCGTGC
GGAACCTGACGCTGTTGAACAACGCCCGGGCTAGCGGTAGCGGCGGCGGC
GGCAGCGCGGGCCCGGACGGTTCGGCGGAGGAGGCCATCGCGAAGGAGTC
GGCGGCGCTGTGCGACAACACGGTTGTCCTCGATGGGGAAGGGATGAGGT
CAGCGCTGAGGCTGGCGGGGCACCCGGTCAACGCGCCCGCCAAGGAGCTG
CTCGCGTTGCTGGAGTCTCTGGTCCTCAGGTGTGCGAGCAGCAAGCTG
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