mRNA_E-siliculosus-1a_F_contig1436.2559.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE) HSP 1 Score: 468 bits (1204), Expect = 1.480e-162 Identity = 227/312 (72.76%), Postives = 257/312 (82.37%), Query Frame = 2
Query: 119 MPPYVKKCFHVVRLASIFSLFVVGNDTLYARSEPDQPPEYCTVFHHMVKSAGSTIKSTLRSASRREGLPFPGLCIDGPNS-VPPCQEAFNSSAVITGYAELMRT--PLEDVRKNCEYFTLLRHPIDRLVSAFFYCPLDHDRQLRPLKFCGHADHPVPATERLLEFAQIYWQNMAFKQMTFGMYCFPDLICEPNRVGAAPDVGEPGGLDVLQEVESILAGYTAVGIMEHWELSMQLFNARVRSPVRYWNMTVLNNAGLRSGLRDEVLQWAHDSPEVHRVVGTDMLLYSFALSIFKHQTTVALGTNWLGGGSQC 1045
MPPY+K + +VRLAS+ SL VVG+DT YARSEP QPPEYCTVFHHMVKS GSTIK L +SR G P PG C+ G + C+EAFNSSAVI GYAELMR PLE VR++CEYFTLLRHP+DRLVSAFFYCP DHD QLRP K+CG+AD P+PAT+RLLEFAQ +W+NMA+KQMTFGMYC LICE V AP + EP GLDVLQ+VE IL+GYTAVGIMEHW+LSMQLFNARVRSPVR WNMTV +NAGL S LRDEVLQWAHDSP +HR++ TD+LLYSFALSIFK QTT +LGTNWLGG S+C
Sbjct: 1 MPPYMKTIWLIVRLASVLSLLVVGSDTFYARSEPGQPPEYCTVFHHMVKSGGSTIKHNLHISSRAAGGPRPGSCVAGGGKRINSCKEAFNSSAVIMGYAELMRQDGPLEAVRRDCEYFTLLRHPVDRLVSAFFYCPTDHDLQLRPPKWCGYADDPLPATDRLLEFAQQHWKNMAYKQMTFGMYCPHGLICEATEVETAPGLDEPHGLDVLQKVEDILSGYTAVGIMEHWDLSMQLFNARVRSPVRDWNMTVRSNAGLPSELRDEVLQWAHDSPVIHRLMATDLLLYSFALSIFKRQTTESLGTNWLGGSSRC 312
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Match: D7G5K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K0_ECTSI) HSP 1 Score: 464 bits (1193), Expect = 2.300e-159 Identity = 222/317 (70.03%), Postives = 253/317 (79.81%), Query Frame = 2
Query: 77 RATGLEPASCPVGLMPPYVKKCFHVVRLASIFSLFVVGNDTLYARSEPDQPPEYCTVFHHMVKSAGSTIKSTLRSASRREGLPFPGLCIDGPNSVPPCQEAFNSSAVITGYAELMRTPLEDVRKNCEYFTLLRHPIDRLVSAFFYCPLDHDRQLRPLKFCGHADHPVPATERLLEFAQIYWQNMAFKQMTFGMYCFPDLICEPNRVGAAPDVGEPGGLDVLQEVESILAGYTAVGIMEHWELSMQLFNARVRSPVRYWNMTVLNNAGLRSGLRDEVLQWAHDSPEVHRVVGTDMLLYSFALSIFKHQTTVALGTNWL 1027
R+T LEPAS G M + K VRLA +FSL VVG+DTLYARSEP +PPEYCTVFHHMVKSAGST+KS L A+R EGLP P +CI+G C EA NSSA+ITGYAEL+R PLE R+ C+YFT+LRHPIDRLVSAFFYCP DHD QLRP K+CGHA+HPVPATERLL+FAQ WQN AFKQMTFG+YC PD C+ V + + EPG LD+LQ+V++ LAGYTAVGIMEHW+LSMQLFNARVRSPVR WNM N G+ SGLRDEVLQWAH+SP +HRV+GTDMLLY FALSIFK QTT +LGTNWL
Sbjct: 93 RSTCLEPASRSGGAMALHTKMLLDTVRLACVFSLLVVGSDTLYARSEPGEPPEYCTVFHHMVKSAGSTVKSLLHRATRNEGLPRPAVCINGHARTDACLEAINSSAIITGYAELIRYPLEVNRRECDYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHAEHPVPATERLLDFAQESWQNKAFKQMTFGLYCPPDTFCDEAEVESPQMLDEPGMLDILQQVQNTLAGYTAVGIMEHWDLSMQLFNARVRSPVREWNMFKQRNPGVMSGLRDEVLQWAHESPAIHRVIGTDMLLYYFALSIFKQQTTASLGTNWL 409
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Match: A0A6H5L5I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I1_9PHAE) HSP 1 Score: 441 bits (1133), Expect = 9.050e-152 Identity = 215/312 (68.91%), Postives = 242/312 (77.56%), Query Frame = 2
Query: 119 MPPYVKKCFHVVRLASIFSLFVVGNDTLYARSEPDQPPEYCTVFHHMVKSAGSTIKSTLRSASRREGLPFPGLCI-DGPNSVPPCQEAFNSSAVITGYAELMR--TPLEDVRKNCEYFTLLRHPIDRLVSAFFYCPLDHDRQLRPLKFCGHADHPVPATERLLEFAQIYWQNMAFKQMTFGMYCFPDLICEPNRVGAAPDVGEPGGLDVLQEVESILAGYTAVGIMEHWELSMQLFNARVRSPVRYWNMTVLNNAGLRSGLRDEVLQWAHDSPEVHRVVGTDMLLYSFALSIFKHQTTVALGTNWLGGGSQC 1045
MPP+++ H+V S+ SL VVG+D YARSEP QPPEYCTVFHHMVKS GSTI G P PGLC+ G C+EAFNSSAVI GYAE MR PLE VRK+CEYFTLLRHP+DRLVSAFFYCP +HD Q RP K+CG+ADHP+PAT+RLL++AQ YW+NMA+KQM FGMYC LICE V AP + EP GLDVLQ+VE IL+ YTAVGIMEHW+LSMQLFNARVRSPVR WN+T +NAGL S LRDEVLQWAHDSP VHR++ TDMLLYSFALSIFK QTT ALGTNWL G S C
Sbjct: 1 MPPHMRTILHIVWSVSVLSLLVVGSDAFYARSEPGQPPEYCTVFHHMVKSGGSTIXXXXXXXXXSAGDPRPGLCVAGGGEKTNSCKEAFNSSAVIMGYAEAMRQDVPLEAVRKDCEYFTLLRHPVDRLVSAFFYCPKEHDVQSRPPKWCGYADHPLPATDRLLDYAQQYWKNMAYKQMAFGMYCPHGLICEATEVRTAPGLDEPHGLDVLQKVEDILSRYTAVGIMEHWDLSMQLFNARVRSPVREWNITQHSNAGLPSELRDEVLQWAHDSPVVHRLIATDMLLYSFALSIFKRQTTEALGTNWLDGSSWC 312
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Match: A0A6H5JT32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT32_9PHAE) HSP 1 Score: 349 bits (895), Expect = 1.670e-114 Identity = 165/290 (56.90%), Postives = 215/290 (74.14%), Query Frame = 2
Query: 155 RLASIFSLFVVGNDTLYARSEPDQPPEYCTVFHHMVKSAGSTIKSTLRSASRREGLPFPGLCIDGPNSVPPCQEAFNSSAVITGYAELMRTPLEDVRKNCEYFTLLRHPIDRLVSAFFYCPLDHDRQLRPLKFCGHADHPVPATERLLEFAQIYWQNMAFKQMTFGMYCFPDLICEPNRVGAAPDVGEPGGLDVLQEVESILAGYTAVGIMEHWELSMQLFNARVRSPVRYWNMTVLNNAGLRSGLRDEVLQWAHDSPEVHRVVGTDMLLYSFALSIFKHQTTVALGTNW 1024
R+A + SL +G D LYA S P +PPEYCT+F+HMVKS GSTIK L A++ +G+ P +C++G C +A +S+ VI GYAEL+R PLE + + CEYFT++RHPIDRL+SAFFYCP D Q RP K+CG+A+ P P T+RL+EFA+ W+N AF+QMTFG+YC P+ CE GA V EPGG +L+++E+ILA YTAVGI+E+W+LSMQLFNARV SPV W +N G RSGLRDEV +WAH SPE+HRV+ TDMLLY +++S+FK QT+ +LGT W
Sbjct: 100 RVACLLSLRAIGCDALYAWSNPGEPPEYCTLFNHMVKSGGSTIKDKLDIAAKADGVDGPAMCVNGVGYEDSCLKAMHSAPVIVGYAELLRYPLEVIGRECEYFTVMRHPIDRLLSAFFYCPAYGDVQDRPPKWCGYANDPQPVTDRLVEFAKYGWKNKAFRQMTFGLYCPPNAFCEQAEPGAQQAVHEPGGWILLEQIEAILATYTAVGILEYWDLSMQLFNARVTSPVWDWEDMEHSNRGQRSGLRDEVHRWAHMSPEIHRVMATDMLLYDYSVSVFKLQTSASLGTIW 389
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Match: A0A6H5K0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M4_9PHAE) HSP 1 Score: 340 bits (871), Expect = 7.010e-113 Identity = 161/233 (69.10%), Postives = 187/233 (80.26%), Query Frame = 2
Query: 335 LCIDGPNSVPPCQEAFNSSAVITGYAELMRT--PLEDVRKNCEYFTLLRHPIDRLVSAFFYCPLDHDRQLRPLKFCGHADHPVPATERLLEFAQIYWQNMAFKQMTFGMYCFPDLICEPNRVGAAPDVGEPGGLDVLQEVESILAGYTAVGIMEHWELSMQLFNARVRSPVRYWNMTVLNNAGLRSGLRDEVLQWAHDSPEVHRVVGTDMLLYSFALSIFKHQTTVALGTNWL 1027
+CI+ + C EA NSSA+ITGYAEL+R PLE R+ C+YFT+LRHPIDRLVSAFFYCP DHD QLRP K+CGH +HPVPATERLL+FAQ W+N AFKQMTFG+YC PD CE V + + EPG LDVLQ+V+ ILAGYTAVGIMEHW+LS+QLFNARVRSPVR WN++ N G+ + LRDEVLQWAH SP +HRV+GTDMLLYSF LSIFK QTT +LGTNWL
Sbjct: 22 VCINEQDRTNACLEAINSSAIITGYAELIRRVYPLEVERRECQYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHEEHPVPATERLLDFAQESWRNQAFKQMTFGLYCPPDTFCEEAEVDSPQMLDEPGILDVLQQVQDILAGYTAVGIMEHWDLSIQLFNARVRSPVREWNVSKQRNPGVMTRLRDEVLQWAHKSPAIHRVIGTDMLLYSFGLSIFKQQTTASLGTNWL 254
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Match: A0A6H5JUF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF0_9PHAE) HSP 1 Score: 305 bits (782), Expect = 8.160e-100 Identity = 147/222 (66.22%), Postives = 165/222 (74.32%), Query Frame = 2
Query: 428 PLEDVRKNCEYFTLLRHPIDRLVSAFFYCPLDHDRQLRPLKFCGHADHPVPATERLLEFAQIYWQNMAFKQMTFGMYCFPDLICEP----------------------NRVGAAPDVGEPGGLDVLQEVESILAGYTAVGIMEHWELSMQLFNARVRSPVRYWNMTVLNNAGLRSGLRDEVLQWAHDSPEVHRVVGTDMLLYSFALSIFKHQTTVALGTNWL 1027
PLE R+ C+YFT+LRHPIDRLVSAFFYCP DHD QLRP K+CGH +HPVPATERLL+FAQ W+N AFKQMTFG+YC PD CE VG + EPG LDVLQ+V+ ILAGYTAVGIMEHW+LSMQLFNARVRSPVR WN+ N G+ +GLRDEVLQWAH SP +HRV+GTDMLLYSF LSIFK QTT +LGTNWL
Sbjct: 6 PLEVERRECQYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHEEHPVPATERLLDFAQESWRNQAFKQMTFGLYCPPDTFCEVAEVNNVSQCETFVVGVGSLDGLREVGPPQMLDEPGILDVLQQVQDILAGYTAVGIMEHWDLSMQLFNARVRSPVREWNVFKQRNPGVMTGLRDEVLQWAHKSPAIHRVIGTDMLLYSFGLSIFKQQTTASLGTNWL 227
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Match: D8LHT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT4_ECTSI) HSP 1 Score: 290 bits (741), Expect = 1.800e-92 Identity = 139/287 (48.43%), Postives = 184/287 (64.11%), Query Frame = 2
Query: 188 GNDTLYARSEPD-QPPEYCTVFHHMVKSAGSTIKSTLRSASRREGLPFPGLCIDGPNSVPPCQEAFNSSAVITGYAELMRTPLEDVRKNCEYFTLLRHPIDRLVSAFFYCPLDHDRQLRPLKFCGHADHPVPATERLLEFAQIYWQNMAFKQMTFGMYCFPDLICEPNRVGAAPD-VGEPGGLDVLQEVESILAGYTAVGIMEHWELSMQLFNARVRSPVRYWNMTVLNNAGLRSGLRDEVLQWAHDSPEVHRVVGTDMLLYSFALSIFKHQTTVALGTNWLGGGSQ 1042
G +Y R+ D PP YCT+FHHMVK+ G+ ++ L AS +G PGLC+ GP+S C +A + S+VI GY EL+R P+E++ + C+YFT++RHPIDRLVSAF+YCP HD+Q+RP K+CG HP P T RLL+FA+ W A Q++F YC P CE + V P + +L E +L YTAVGI E WELSM+LF+A + SPV+ W N G +S R+ +L+WAH SPE+ + VG D+LLY ALSIFK QT ALGT W GG+
Sbjct: 11 GCQAIYTRASMDTDPPTYCTMFHHMVKNGGTAVRDQLILASEIQGRDVPGLCVIGPSSAEACLDALHHSSVIMGYVELLRDPMEELGRRCDYFTMMRHPIDRLVSAFYYCPTFHDKQVRPNKWCGGHSHPDPLTSRLLDFAREDWMCKAMFQLSFASYCPPGAFCEHDMVEEPPTHLNGVEDWSLLAVAEDVLLSYTAVGIFEEWELSMELFDAVISSPVQQWGGEEAVNPGPKSSEREMLLRWAHSSPEIRQAVGGDLLLYDLALSIFKRQTAEALGTVWKNGGTS 297
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Match: D7FUF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF7_ECTSI) HSP 1 Score: 205 bits (521), Expect = 8.170e-62 Identity = 95/136 (69.85%), Postives = 110/136 (80.88%), Query Frame = 2
Query: 617 WQNMAFKQMTFGMYCFPDLICEPNRVGAAPDVGEPGGLDVLQEVESILAGYTAVGIMEHWELSMQLFNARVRSPVRYWNMTVLNNAGLRSGLRDEVLQWAHDSPEVHRVVGTDMLLYSFALSIFKHQTTVALGTNW 1024
WQN+AFKQMT+G+YC P+ IC ++ A V EPGGLD+LQ+VE ILAGY AVGIMEHW LSM+LFNARVRSPVR WN N G+ SGLRD+VLQWAH++P +HRV+G DMLLYSFALSIFK QT ALGTNW
Sbjct: 2 WQNLAFKQMTYGLYCPPEAICGEMQLDAPQMVDEPGGLDLLQQVEDILAGYAAVGIMEHWGLSMELFNARVRSPVREWNRFKQKNPGVTSGLRDQVLQWAHENPAIHRVLGADMLLYSFALSIFKQQTAEALGTNW 137
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Match: A0A6H5J534_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J534_9PHAE) HSP 1 Score: 219 bits (559), Expect = 4.720e-61 Identity = 107/164 (65.24%), Postives = 119/164 (72.56%), Query Frame = 2
Query: 203 YARSEPDQPPEYCTVFHHMVKSAGSTIKSTLRSASRREGLPFPGLCIDGPNSVPPCQEAFNSSAVITGYAELMRTPLEDVRKNCEYFTLLRHPIDRLVSAFFYCPLDHDRQLRPLKFCGHADHPVPATERLLEFAQIYWQNMAFKQMTFGMYCFPDLICEPNRV 694
YARS+PDQPPEYCTVFHHMVKSAGSTIK L +SR G+P PG C A +S G A R PLE VRK CEYFTL+RHPIDRLVSAFFYCP DHD QLRP K+CG+ADH VP T+RLL+F + YWQNMA+KQM +GMYC PDLICE V
Sbjct: 577 YARSDPDQPPEYCTVFHHMVKSAGSTIKDNLYKSSRIAGVPRPG-------GTTRCATACHSIPFPLGRA---RVPLEAVRKGCEYFTLMRHPIDRLVSAFFYCPKDHDLQLRPRKWCGYADHQVPVTDRLLDFTEHYWQNMAYKQMAYGMYCPPDLICEATEV 730
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Match: A0A6H5JQY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY1_9PHAE) HSP 1 Score: 184 bits (467), Expect = 1.480e-53 Identity = 86/122 (70.49%), Postives = 97/122 (79.51%), Query Frame = 2
Query: 335 LCIDGPNSVPPCQEAFNSSAVITGYAELMRT--PLEDVRKNCEYFTLLRHPIDRLVSAFFYCPLDHDRQLRPLKFCGHADHPVPATERLLEFAQIYWQNMAFKQMTFGMYCFPDLICEPNRV 694
+CI+G + C EA NSSA+ITGYAEL+R PLE R+ CEYFT+LRHPIDRLVSAFFYCP DHD QLRP K+CGH +HPVPATERLL+FAQ WQNMAFKQMTFG+YC PD CE V
Sbjct: 22 VCINGHDRTNACLEAINSSAIITGYAELIRRVYPLEVERRECEYFTMLRHPIDRLVSAFFYCPTDHDVQLRPRKWCGHEEHPVPATERLLDFAQESWQNMAFKQMTFGLYCPPDTFCEEAEV 143 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1436.2559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1436.2559.1 >prot_E-siliculosus-1a_F_contig1436.2559.1 ID=prot_E-siliculosus-1a_F_contig1436.2559.1|Name=mRNA_E-siliculosus-1a_F_contig1436.2559.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=310bp MPPYVKKCFHVVRLASIFSLFVVGNDTLYARSEPDQPPEYCTVFHHMVKSback to top mRNA from alignment at E-siliculosus-1a_F_contig1436:12914..24802- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1436.2559.1 ID=mRNA_E-siliculosus-1a_F_contig1436.2559.1|Name=mRNA_E-siliculosus-1a_F_contig1436.2559.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11889bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1436:12914..24802- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1436:12914..24802- >mRNA_E-siliculosus-1a_F_contig1436.2559.1 ID=mRNA_E-siliculosus-1a_F_contig1436.2559.1|Name=mRNA_E-siliculosus-1a_F_contig1436.2559.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1860bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1436:12914..24802- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |