mRNA_E-siliculosus-1a_F_contig1433.2547.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1433.2547.1
Unique NamemRNA_E-siliculosus-1a_F_contig1433.2547.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Match: D7FKP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKP9_ECTSI)

HSP 1 Score: 562 bits (1449), Expect = 3.780e-195
Identity = 312/321 (97.20%), Postives = 312/321 (97.20%), Query Frame = 1
Query:  241 KEARXXXXYREKLALXXXXXXXXXXXXXXAERKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGTADKLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFGEQDPGEGEVGIKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELVGENGPNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDSGEASVDTEFWEAVLKELHVFQ 1203
            KEARXX  YREKLAL    XXXXXXXXXXAERKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGTADKLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFGEQD G GEVGIKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELVGENGPNRDFW SLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDSGEASVDTEFWEAVLKELHVFQ
Sbjct:   81 KEARXXQKYREKLALKKAQXXXXXXXXXXAERKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGTADKLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFGEQDQGAGEVGIKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELVGENGPNRDFWLSLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDSGEASVDTEFWEAVLKELHVFQ 401          
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Match: A0A835YNE1_9STRA (Cactus-binding C-terminus of cactin protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE1_9STRA)

HSP 1 Score: 260 bits (665), Expect = 2.130e-77
Identity = 147/288 (51.04%), Postives = 195/288 (67.71%), Query Frame = 1
Query:  334 RKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGTADKLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFGEQDPGEGEVG-IKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELV-GENGPNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDSGEASVDTEFWEAVLKEL 1191
            RK  +K  GTAA FGY+ND NPFGDSNL EQF W KK +KEGT    +TK+ +RD  +  ++EIEKVRKRR+++        RLKAEE+RLREQQQYGDWQ+KEE+FHL QA  RSKIRL+EGR+RPID +AKN+++FGE   G G  G I Y    ++D + LE+ELREPY+L +GL++ ELE+L  ++  YQE+   + G NR FW +LGVVC D++A+A+E  G      A  GLHK V  DV A  E +    L E + ++  ++  GE  VD  +W AV ++L
Sbjct:  107 RKAASKQTGTAARFGYSNDSNPFGDSNLEEQFTWRKKLDKEGTDPAAVTKKQLRDAHQAKLEEIEKVRKRREESXXXXXXXXRLKAEEARLREQQQYGDWQRKEEEFHLHQAKTRSKIRLIEGRERPIDMVAKNLLIFGEAPAGPGVGGGIHYSSGRELDTSSLEIELREPYRLCEGLSVAELEELAADVRAYQEMEDAQEGANRAFWAALGVVCADELARAQEAAGIVP---AAAGLHKNVRGDVAALLEGRDAARLEELREQVDGRVQRGEGDVD--YWAAVSQQL 389          
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Match: A0A7S2BDL4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BDL4_9STRA)

HSP 1 Score: 217 bits (553), Expect = 6.670e-62
Identity = 134/295 (45.42%), Postives = 182/295 (61.69%), Query Frame = 1
Query:  331 ERKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGTAD--KLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFGEQDPGEGEVGIKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELVGENGPNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDSGEASVDTEFWEAVLKELHVFQVQ 1209
            ++K K K        GYTN+ NPFGD NL +QFVW KK EK G  D  KL TK   R+ Q   + EI KVRKRR D EAE+EEM+RL+AEESRLRE +QY DW KKEE FHL QA  RSKIRLVEGR++PID +AKN+IL G  D  +             D + LE+EL EP   F GL + +L +LQ +I  Y +L  ++GPN+ FW +L +V   +V  A +     ++     G+H  V+D++  KF  ++ +EL      IQ +++S + ++D EFWEA L+EL V++ +
Sbjct:   18 KKKSKVKEPKLYQMVGYTNEENPFGDHNLNQQFVWKKKVEKTGEGDESKLSTKA-RRERQDHFLGEIHKVRKRRSDREAEQEEMERLRAEESRLREAEQYADWHKKEESFHLNQARVRSKIRLVEGREKPIDIMAKNLILLGNCDDDDDSA--------LHDTSQLEVELMEPTAFFRGLNIGDLRELQADIQTYLDLE-KDGPNKSFWSALKLVAKKEVQDASQSDSGIQQANRKAGIHSAVMDELRRKFAAKSSDELTSTHMDIQLRINSNDPTIDVEFWEAALEELEVYRAR 302          
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Match: W2QKY9_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2QKY9_PHYPN)

HSP 1 Score: 184 bits (466), Expect = 3.870e-49
Identity = 110/304 (36.18%), Postives = 184/304 (60.53%), Query Frame = 1
Query:  328 AERKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGTADKLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFGEQDPGEGEVGIKYGGKGD-----VDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELV--GENGPNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDS---GEASVDTEFWEAVLKELHVFQVQ 1209
            AERK   K     A  GY+++ NPFGDS+L++ FVWGKK E +G      T R+++  Q + +DEI K RKRR++ EAE     RLK+EE RL++ +QY DWQ+KEEQFHL+QA  RS++R+   R++P+D LAKN++L          V  K+G   +      ++  + +E R P+ + + L+++EL++LQ ++  Y+EL   G  G N +FW+ + +VCDD++ + K+   E + G   G +H +V + +    + +  +EL + + ++++ + S   G   VD +FWE V +++ V+Q +
Sbjct:   37 AERKAHKKSAKMLASLGYSDETNPFGDSSLSQPFVWGKKYEDKGKEKP--TARELKKQQLRRVDEIRKARKRREEREAEXXXXXRLKSEEMRLKDAEQYEDWQQKEEQFHLKQAKVRSQLRIRANREKPVDLLAKNLLL----------VSAKHGADDEDEFFKKEIGRIRVEHRRPHAVVEVLSMDELKELQEDVRTYEELEESGNGGHNAEFWKLMRLVCDDRIRRLKKSQSEGQAG--RGAIHDSVNETIEEMLDGKDKQELIKLQGEVKETIASASNGATGVDVDFWEEVTQQIQVYQAR 326          
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Match: A0A6A4CAN4_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CAN4_9STRA)

HSP 1 Score: 173 bits (439), Expect = 3.090e-45
Identity = 110/303 (36.30%), Postives = 177/303 (58.42%), Query Frame = 1
Query:  328 AERKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGTADKLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILF----GEQDPGEGEVGIKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELV--GENGPNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDS---GEASVDTEFWEAVLKELHVFQVQ 1209
            AER+ + K     A  GY+++ NPFGDS+L++ FVWGKK E +G A+   + RD++  Q + +DEI K RKRR+          RLK+EE RL++ +QY DWQ+KEEQFHL+QA  RS++R+   R++P+D LAKN++L     GEQD  E E   +  G+       + +E R P+ + + L ++EL +LQ ++  Y+EL   G  G N +FW  + +VCDD++ +      E  EG   G +H +V + +    + +  + L + + ++++ + S   G   VD +FWE V  ++ V Q +
Sbjct:   42 AERRARKKSAKMLASLGYSDETNPFGDSSLSQPFVWGKKYEGQGAAEP--SARDLKKQQLRRVDEIRKARKRREXXXXXXXXXXRLKSEELRLKDAEQYEDWQQKEEQFHLKQAKVRSQLRIRANREKPVDLLAKNLLLVSAKSGEQD--EDEFFKREIGR-------IRVEHRRPHAIVEVLAMDELRELQEDVATYEELEQSGNGGHNAEFWTLMKLVCDDRIRRLTRAQSEGREG--RGAIHDSVNETIEQMLDGKDADALNKLQDEVKETIASASNGATGVDVDFWEEVAMQIRVCQAR 331          
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Match: A0A7S3GQC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQC4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 3.610e-45
Identity = 118/280 (42.14%), Postives = 165/280 (58.93%), Query Frame = 1
Query:  334 RKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGTADKLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFGEQDPGEGEVGIKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQEL-VGENGPNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDSGEASVDTEFW 1170
            R+   K +  A   GY+NDINPFGDSNL + FVWGKKKEK+    K +   + R  + + I EIEKVRKRR D E E  E++RL+ EE RLRE  QY DWQ+KEE+F L+Q  QRSKIRLVE R+ PID +AKN++L   +         K     D+++  LE ELR P ++   L+++EL+QL+T++  Y +L V + G  + FWRSL  V   +V K      ET   V     H ++  DV    + ++V+EL   ++ I+  L  G  + D E+W
Sbjct:   20 RREAKKAEKMAKVLGYSNDINPFGDSNLLQPFVWGKKKEKDKYEKKEVAVDNTR-KRTELIGEIEKVRKRRSDRENEMAEIERLRDEEQRLREAAQYDDWQRKEEEFILEQTKQRSKIRLVENRETPIDVIAKNILLV--EAAKLAAASTKPEDNKDLNLLELEGELRNPIEIVYDLSVDELKQLKTDVTAYLDLEVSKAGTYQSFWRSLLTVVTIEVQKRTS---ETPISV-----HDSIASDVEDLLKGKSVQELDALESDIEKSLREGRGA-DVEYW 287          
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Match: A0A2P4Y6E1_9STRA (Cactin_mid domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6E1_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.200e-45
Identity = 103/298 (34.56%), Postives = 175/298 (58.72%), Query Frame = 1
Query:  331 ERKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGTADKLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFGEQDPGEGEVGIKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELV--GENGPNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDS---GEASVDTEFWEAVLKELHVFQVQ 1209
            ERK + K     A  GY+++ NPFGDS+L+E FVWGKK E +G      + R+++  Q + +DEI K R+RR++  A    M+RLK+EE RL++ +QY DWQ+KEE+FHL+QA  RS++R+   R++P+D LAKN++L   +   E E           ++  + +E R P+ + + L+++EL +LQ ++  Y+EL   G  G N +FW  + +VCDD++ + K    ++E     G +H +V D +      +    L + + ++++ + S   G   VD ++WE V +++ V Q +
Sbjct:   40 ERKARKKSSKMLASLGYSDETNPFGDSSLSEPFVWGKKYEDKGKEKP--SARELKKQQIRRVDEIRKARRRREEXXAXXXXMERLKSEELRLKDAEQYEDWQQKEEEFHLKQAKVRSQLRIRANREKPVDLLAKNLLLVSAKSGQEDEDDFFK-----KEIGRIRVEHRRPHAIVEVLSMDELRELQGDVHTYEELEQSGNGGHNAEFWNLMKLVCDDRIRRLKR--SQSEGRSDRGAIHDSVNDTIEEMLSGKDKGALEKLQCEVKETIASASNGATGVDVDYWEEVAQQIEVNQAR 328          
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Match: A0A1V9ZIY3_9STRA (F-box domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZIY3_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.570e-44
Identity = 119/309 (38.51%), Postives = 176/309 (56.96%), Query Frame = 1
Query:  364 AAHFGYTNDINPFGDSNLTEQFVWGKKKE--KEGTADKLLTK----------------------RDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFGEQ---DPGEGEVGIKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELVGENGPNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDSGEASVDTEFWEAVLKELHVFQVQ 1209
            A   GY+ND NPFGDSNLT +FVW KK E   + + +K + +                      +D  D++++ I EI KVR+RRD+ +AEREE++RLK EESRLR+  +Y DWQ+KEEQFHL QA  RS IR+ EGR++PID LAKN++L       DP       K       ++   ++ELR P +L  GL   EL +L  +I  Y EL GE G N +FWR L V+C D++ K        ++  +   +H+ V + +      ++ EEL+E    I+  +D G + +D E++E+VL+E+ V + +
Sbjct:   34 AKAMGYSNDSNPFGDSNLTSKFVWHKKAEVAPQRSREKEIRRSRXXXXXXXXXXXXXXXXXXKPKDNEDVREELIREIMKVRQRRDERDAEREELERLKNEESRLRDVSEYEDWQQKEEQFHLSQARVRSHIRIREGREKPIDLLAKNLLLASSSHVIDP------TKAAEDALAELKHAQVELRPPEQLLVGLKSNELTELHNDIQVYIELEGEKGENAEFWRLLEVICLDEMQK------RDKKNSSRHAIHQEVQNSIKEMLAGKSSEELSELAADIEATIDGGGSGIDVEYYESVLQEIKVHKAK 330          
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Match: A0A6S9JR17_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JR17_HETAK)

HSP 1 Score: 171 bits (434), Expect = 4.290e-44
Identity = 126/318 (39.62%), Postives = 174/318 (54.72%), Query Frame = 1
Query:  331 ERKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGTADKLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILF-GEQDPGEGEVG--IKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELVG-ENG--PNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGG-------------LHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDS------GEASVDTEFWEAVLKELHVFQVQ 1209
            ERK+  K +     +GYTND NP+GD NLT+QFVW +K  KE  +    +K  + + ++K ++E+                   LKAEESRLRE QQ+GDWQKKEE FH  QA  RSKIRL+E R +PID LAKN++LF GE+   E   G   KY G  ++ +  LE+ELREPY +F  LT+ EL  LQ +I  YQEL G E G  P R FW +L  +C D++  A    G   +  A GG             +H+ V  +V A F  ++   L +   ++  K ++      G A  D E+W AVL+ L V++ +
Sbjct:   80 ERKKLVKEEKAKLFYGYTNDENPWGDPNLTKQFVWRRKHAKEEPSGNA-SKTSLVEKRRKTMEEVXXXXXXXXXXXXXXXXXXXLKAEESRLREVQQFGDWQKKEEDFHRYQAKIRSKIRLIEDRAKPIDLLAKNLLLFSGEEXXXEELDGGRCKYKGGTNLSIDHLEVELREPYLIFQDLTVAELRTLQGDIQTYQELQGKEEGSLPAR-FWGALAAICADELKHATHRAGTEAKAAALGGGGGAAGRDNIKGGMHEAVRGEVEALFGGRSAVYLTKMAGQLAAKAEAARAGGDGGAGGDPEYWAAVLEHLAVYRAK 395          
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Match: I2CPG4_NANGC (Cactin_mid domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPG4_NANGC)

HSP 1 Score: 164 bits (416), Expect = 6.660e-44
Identity = 97/220 (44.09%), Postives = 142/220 (64.55%), Query Frame = 1
Query:  574 MDRLKAEESRLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFGE------QDPGEGEVGIKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEILQYQELVGENGPNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGGLHKTVIDDVTAKFENQTVEELAEQKTKIQDKLDSGEASVDTEFWEAVLKELHVFQVQWF 1215
            M+RL+AEE+RLRE   Y +W++KEE+FHL+QA  RSKIRL+EGR++P+D LAKN+++FGE      QD   G V IKY GK  +D+T LE ELREP+ +F+ L L +L+ LQ +I +YQ L    G ++ FW +L VV  D+V +A           A+ G+H+ V   V      ++VE+L E K ++Q+KL+ G   VD ++W  +L EL V++ + F
Sbjct:    1 MERLRAEEARLREAGNYEEWERKEEEFHLEQARIRSKIRLLEGREKPVDLLAKNILMFGEGSGPDAQDEPRGGV-IKYKGKTSLDLTHLEAELREPFAIFENLALPQLQDLQQDIREYQGLETA-GAHQGFWEALAVVAQDEVERATTAH-------ASRGMHQAVSHAVEDMLGGKSVEDLEEVKVEVQEKLEKGGRDVDVDYWSKLLDELRVYRARAF 211          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKP9_ECTSI3.780e-19597.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNE1_9STRA2.130e-7751.04Cactus-binding C-terminus of cactin protein-domain... [more]
A0A7S2BDL4_9STRA6.670e-6245.42Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W2QKY9_PHYPN3.870e-4936.18Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A6A4CAN4_9STRA3.090e-4536.30Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A7S3GQC4_9STRA3.610e-4542.14Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2P4Y6E1_9STRA7.200e-4534.56Cactin_mid domain-containing protein (Fragment) n=... [more]
A0A1V9ZIY3_9STRA1.570e-4438.51F-box domain-containing protein n=1 Tax=Thraustoth... [more]
A0A6S9JR17_HETAK4.290e-4439.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
I2CPG4_NANGC6.660e-4444.09Cactin_mid domain-containing protein (Fragment) n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1433contigE-siliculosus-1a_F_contig1433:27726..32611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1221
Model size1221
Exons10
Ec32 orthologEc-21_001680.1
Ec32 ortholog descriptionCactin, C-terminal
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.A
EggNOG OGsKOG2370@1,KOG2370@2759
EggNOG free text desc.negative regulation of type I interferon-mediated signaling pathway
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000578,GO:0001654,GO:0001817,GO:0001818,GO:0001932,GO:0001933,GO:0001959,GO:0001960,GO:0002237,GO:0002682,GO:0002683,GO:0002831,GO:0002832,GO:0003002,GO:0003006,GO:0003407,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007346,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007548,GO:0008150,GO:0008152,GO:0008380,GO:0008406,GO:0008595,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009880,GO:0009889,GO:0009892,GO:0009948,GO:0009950,GO:0009952,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010563,GO:0010564,GO:0010605,GO:0010646,GO:0010648,GO:0010971,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019220,GO:0019222,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030111,GO:0030334,GO:0030335,GO:0031323,GO:0031324,GO:0031326,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031664,GO:0031665,GO:0031974,GO:0031981,GO:0032088,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032479,GO:0032480,GO:0032496,GO:0032501,GO:0032502,GO:0032648,GO:0032677,GO:0032680,GO:0032688,GO:0032717,GO:0032720,GO:0032879,GO:0032991,GO:0033993,GO:0034097,GO:0034121,GO:0034122,GO:0034612,GO:0034641,GO:0035282,GO:0040012,GO:0040017,GO:0040019,GO:0042221,GO:0042325,GO:0042326,GO:0043010,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043433,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045137,GO:0045595,GO:0045787,GO:0045824,GO:0045931,GO:0045936,GO:0045995,GO:0046483,GO:0048316,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051094,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051259,GO:0051260,GO:0051270,GO:0051272,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060041,GO:0060255,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070555,GO:0070887,GO:0071013,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071347,GO:0071356,GO:0071396,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090068,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902494,GO:1902749,GO:1902751,GO:1903506,GO:1903555,GO:1903556,GO:1990904,GO:2000026,GO:2000112,GO:2000145,GO:2000147,GO:2001141
Preferred nameCACTIN
Seed eggNOG ortholog2880.D7FKP9
Seed ortholog evalue9.3e-159
Seed ortholog score566.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1433.2547.1prot_E-siliculosus-1a_F_contig1433.2547.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1433 27726..32611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927947.3346853-CDS-E-siliculosus-1a_F_contig1433:27725..278181622927947.3346853-CDS-E-siliculosus-1a_F_contig1433:27725..27818Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 27726..27818 +
1696318748.80519-CDS-E-siliculosus-1a_F_contig1433:27725..278181696318748.80519-CDS-E-siliculosus-1a_F_contig1433:27725..27818Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 27726..27818 +
1622927947.3605216-CDS-E-siliculosus-1a_F_contig1433:28346..285041622927947.3605216-CDS-E-siliculosus-1a_F_contig1433:28346..28504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 28347..28504 +
1696318748.814828-CDS-E-siliculosus-1a_F_contig1433:28346..285041696318748.814828-CDS-E-siliculosus-1a_F_contig1433:28346..28504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 28347..28504 +
1622927947.3912306-CDS-E-siliculosus-1a_F_contig1433:29587..297131622927947.3912306-CDS-E-siliculosus-1a_F_contig1433:29587..29713Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 29588..29713 +
1696318748.822217-CDS-E-siliculosus-1a_F_contig1433:29587..297131696318748.822217-CDS-E-siliculosus-1a_F_contig1433:29587..29713Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 29588..29713 +
1622927947.4089959-CDS-E-siliculosus-1a_F_contig1433:29939..300931622927947.4089959-CDS-E-siliculosus-1a_F_contig1433:29939..30093Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 29940..30093 +
1696318748.8296251-CDS-E-siliculosus-1a_F_contig1433:29939..300931696318748.8296251-CDS-E-siliculosus-1a_F_contig1433:29939..30093Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 29940..30093 +
1622927947.4230084-CDS-E-siliculosus-1a_F_contig1433:30344..304971622927947.4230084-CDS-E-siliculosus-1a_F_contig1433:30344..30497Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 30345..30497 +
1696318748.8385372-CDS-E-siliculosus-1a_F_contig1433:30344..304971696318748.8385372-CDS-E-siliculosus-1a_F_contig1433:30344..30497Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 30345..30497 +
1622927947.437059-CDS-E-siliculosus-1a_F_contig1433:30701..307911622927947.437059-CDS-E-siliculosus-1a_F_contig1433:30701..30791Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 30702..30791 +
1696318748.8493102-CDS-E-siliculosus-1a_F_contig1433:30701..307911696318748.8493102-CDS-E-siliculosus-1a_F_contig1433:30701..30791Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 30702..30791 +
1622927947.4533718-CDS-E-siliculosus-1a_F_contig1433:31057..311321622927947.4533718-CDS-E-siliculosus-1a_F_contig1433:31057..31132Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 31058..31132 +
1696318748.856697-CDS-E-siliculosus-1a_F_contig1433:31057..311321696318748.856697-CDS-E-siliculosus-1a_F_contig1433:31057..31132Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 31058..31132 +
1622927947.4818883-CDS-E-siliculosus-1a_F_contig1433:31392..314751622927947.4818883-CDS-E-siliculosus-1a_F_contig1433:31392..31475Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 31393..31475 +
1696318748.8689036-CDS-E-siliculosus-1a_F_contig1433:31392..314751696318748.8689036-CDS-E-siliculosus-1a_F_contig1433:31392..31475Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 31393..31475 +
1622927947.5056236-CDS-E-siliculosus-1a_F_contig1433:32045..321601622927947.5056236-CDS-E-siliculosus-1a_F_contig1433:32045..32160Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 32046..32160 +
1696318748.8797228-CDS-E-siliculosus-1a_F_contig1433:32045..321601696318748.8797228-CDS-E-siliculosus-1a_F_contig1433:32045..32160Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 32046..32160 +
1622927947.51606-CDS-E-siliculosus-1a_F_contig1433:32437..326111622927947.51606-CDS-E-siliculosus-1a_F_contig1433:32437..32611Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 32438..32611 +
1696318748.887944-CDS-E-siliculosus-1a_F_contig1433:32437..326111696318748.887944-CDS-E-siliculosus-1a_F_contig1433:32437..32611Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1433 32438..32611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1433.2547.1

>prot_E-siliculosus-1a_F_contig1433.2547.1 ID=prot_E-siliculosus-1a_F_contig1433.2547.1|Name=mRNA_E-siliculosus-1a_F_contig1433.2547.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=407bp
MGKRGRHRSPSSSSSEERGRRKSSKSSKQKQDKDKRKKQSKQPSRSESRS
RSPPQSKSSRRKRDDRSRSPSVDEEARRRAKEARREQKYREKLALKKAQR
RAAESEHEKAERKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKE
KEGTADKLLTKRDMRDMQKKNIDEIEKVRKRRDDAEAEREEMDRLKAEES
RLREQQQYGDWQKKEEQFHLQQASQRSKIRLVEGRDRPIDRLAKNVILFG
EQDPGEGEVGIKYGGKGDVDVTGLEMELREPYKLFDGLTLEELEQLQTEI
LQYQELVGENGPNRDFWRSLGVVCDDKVAKAKELLGETEEGVATGGLHKT
VIDDVTAKFENQTVEELAEQKTKIQDKLDSGEASVDTEFWEAVLKELHVF
QVQWFS*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1433:27726..32611+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1433.2547.1 ID=mRNA_E-siliculosus-1a_F_contig1433.2547.1|Name=mRNA_E-siliculosus-1a_F_contig1433.2547.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4886bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1433:27726..32611+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGAAGCGTGGCCGACACAGGAGTCCATCATCCTCTTCCTCGGAGGA GAGGGGCCGTCGGAAGTCTTCCAAGTCTAGCAAACAGAAGCAGGTGTGTT CGGCAGATACTGCCGCTGTCGCGGGTGCCTCTAGGGGAAGATCTGTGCGT GTGCGATCGCAACAAGACGGCGTTGTCTGAACTGGCCGTGCTTGGCTTCG AGGTGTCCCGTTGTACGATGCAGATTCATTTTGATGGTTGTTTTTAATTT GTTTTCTCATGGAGAGAGGGGTGCACAGAAGCACCGACTTGCGACATATG TACTGTAGTGTTGCGCCAGGTGAGACGGTGGTACATCGGTGCTATGGCCA CGACTACTAGTGGGAGTGCAACGTAAAGTAATCTTCCGTCCTTAGCTAGA GCGGACGATGGTTAGTTGACCTCTGCTGTTTGCCAACCCTGACGGCCCTC TCAGCACTGCTGTCCTGGCTACGACAGAGCGGGGAACTGCTGTCCTATGT ATTTACATGTGGTACATGTTGGCTAGCTTGTTGAGCGTTGGGCCTGTATC CCTGATCTACCAAGACGCACAGACCATCGAAGATTGTATTCCAACGTCGA CCACGCTGTTGGTGTTGGCAGGACAAGGACAAGAGAAAGAAGCAATCCAA GCAACCATCTCGCTCGGAATCGAGGTCGCGTTCACCACCTCAGAGCAAGA GCAGTCGCCGCAAGCGGGACGATCGCAGCCGAAGCCCGAGTGTCGATGAA GAGGCACGGAGGAGGGCTAAGGAGGCCAGGTATAATAAATAGACTACATC GTTTCCTCAGATCTCTCCCCATGTCCTTGCACAGAGACACACACCAATAC CTCCACATACATGCCCTCGCCCAAATCCAGCCACTAAAGCAAAGAGTGGA GAGCAGCAAAAAGGGGCATTTCAAGCCCAACCAGGCCAGGATATCGCGGT ATGCTGCATATTCTCCAAATGAAAATCGTGCGCTACCAAGATCCAGCAGT CATCGTGTCAGCAGCTATACTACACAGCAGCAGCAGTATTGACGAGTCCA ACACTCAGTCCCCATCATAGCCCCACACATACCCTCGCCCGAACCTAGAG AACTACTGATGCAAAGATAGGTGTGTGCTGGTGTGCCTGCGTACTTGTGG GAATTGTGGGAAAATCACAGGAGCTGTAGTGAGCCAGCAGGGCTCACACT GGGGAGGGGACAGAGAAGTACAGAAGTACAACACCAGCTATGGGTCTACA AGCCCTCTCCCTGATCATTTTCACTGATCATTTGAACATACTGAAATAGA GTAGTTTAGGCAGCTTAACGACTGATCTTTTCGAGGTCTACAAGCCTAAC CTGCCCTACCGGCCACACCGCGACCACGCATCAACCCTTCTATGACCCTG TCTGTGCCAACCATCCTGTCGCGGGCTGCCCTCATGGCCTATGGGTGGAG ATAGCTGTTGCGTCTACAGAAGTCCACTCTGTCTCTCTGCTGCACTTCTG TCTCTCTCTCCCGCACTCTCTCCCCCCCCCTTTTTTGTTGCCCCCCCAAG AAAAAGAGCTAGACCCAAAGGGGTTATAACGTACATTGTAGAAGTACGGC CGCAAGCAAAGCTATTCACACACTTTCTGTGCGAACCGCGGCAGGTCCTT GTTGATTTCTCCGCAGAAGTTTGTAGACGAAGGAACACAGGCTGTGGTGA TCAATGGGGGGCAGCGCCTGACGATGCGAGTCCCTGCCCAGAGGTGGGCC TGCATGAGCCAACCCTACCGCTGTCGTGAAACGAAGGGCACAACCGCCAG CGCCCCCGCCGTGCTAGCTTGGCTTTTTGTTTGACCAAATTTCGAAACGT TTCGTGGTCCAGGCGGGAGCAGAAGTACCGGGAGAAGTTGGCGCTGAAGA AAGCTCAGCGGCGCGCGGCAGAATCGGAACACGAAAAGGCGGAGAGGAAG CGAAAAGCCAAAATGGACGGCACGGCGGCGCACTTCGGGTAAGGATTCGT CTGACACATGCCGACCCGTCCGCTCTCATTTTTTACCGTATTTCTTCGGC GGCGGTACATTTAGGTCCAGCCCTCGCGAAGCGCGCCGTGTGTCTCCACG CGTACGATTCCCAAAGTTTGGTAGCCGCCTTTGGCGACCTTTCCCTATCC TCCAGGTTGCCGTCACGGCGACTGCTGTTGTTCCATTTGGTCGTTATGTT TTCATTCTTGCCAGGTACACAAACGATATCAACCCGTTCGGCGATTCTAA CCTGACGGAGCAGTTCGTTTGGGGCAAGAAGAAGGAGAAGGAGGGAACTG CCGACAAGCTGCTCACCAAGCGAGACATGCGCGACATGCAGAAAAAGAAC ATCGATGAGATCGAAAAGGTAAAACTTTTAGTGGGGCTCATAAGCAGGCA TCGCAGCTCCGTTTAAACGCAAAATGGGTTGTCCTACGGACGATGTTGGC GAGGTCAGCAATCACTGTTGATGAACGCTTCCGAGCAGTGAAGCCCAGCT ATTTAGCTCGATGACATCGCGGTGTTTTCGGTAGCCCGACTGTTTATAGC TGCAAAAGAAATTGCAATCGAGAGATTGATTCATGAACGCTTTGCCGGGG TCTCTGTTTTCGTGAAAAGGTGCGAAAGAGGCGAGACGATGCCGAGGCGG AGCGCGAGGAAATGGATCGCCTCAAGGCGGAAGAGTCGAGGCTCCGCGAG CAGCAGCAGTACGGCGACTGGCAGAAGAAGGAAGAGCAATTCCACCTGCA GCAGGCCTCGCAGAGGTCTAAGGTGGGTCCAGAGTCCAGAATGCCGTTTT CCCGTTTTCCACTGGTAAGGTATAGCCGCGGTGCACCACGGCAGCGATGC CATGCGACAGAGCACCTCGGGCTCTCTCTTGTGACTGGGGTGCACGCTCC CCAGCCAAATGTCGCGATTTCCGCCCTTAACATGCTGCTGCTGCTGCTGC TGCTGTTTCTTTGTTTTTGTGAACAGATTCGCCTGGTGGAAGGGCGGGAC CGCCCAATCGACCGCCTGGCGAAGAACGTGATTCTCTTCGGGGAGCAAGA TCCAGGGGAAGGAGAAGTGAGAGAGAGAGTGTGAACGTGTCAATAGACGT CGAGCTTGGGGTCGTTCGTGGAGATGGTTCAAGATGATTTTAATGGTCAC TGCTGCTGTCCAGATCCACACCTAATCCTGGCGTTGTGTTGTGCTATGTT GGATCACGTTGATCGAACCACTTTTTTCATGAAGGGCACTTGGGATTGTG CGAGTGCCACCGTTGATTGTGTTTCATCTTCGCTCAACCCGACCTCTCTC CACTCTATGCATGGCGACGTCGGTCTGTACAGGTGGGCATCAAGTACGGC GGGAAGGGAGACGTGGACGTTACCGGCTTGGAGATGGAGCTCAGAGAGCC ATACAAGGTATGTCTTGTGGAGCAGCGCTGCCACCTTTGTAAGTAGATTG ACGGAAGAACCACAAAGTCGATAAGCGTTGGACATCATGCTTGAGCTACT ACGTTTGCGAGAGTGACCGCGGTGCATGTCGTACGAAAATGGCGACGTAC TTTCCAGTCCCGTCTAGTCGGTGTGTAGCGCTGCGTTGATCGCGTCTGTC TCACAGCTGTTGCTGTCGTGTTGCCTGTTCGTGGTCTGGTGCGCACTATC TTGTGGTTCCTCTGCAGTTGTTCGATGGCTTGACCTTGGAGGAGCTCGAG CAGCTACAGACGGAGATCCTGCAGTACCAAGAGCTCGTCGGGGAGAACGG GTGGGTGGATGGATGGATGGAGAATACTACATCGCTGTACAGCCCCCAAG CCTCCATCCTCTCGCATCGCGTCATGTCTTGACTCCCGTTGCTGGTGTCC GTCTTGTCGGTGTTTCAATACATATCCTCCCGTGCTGTCGGGGCTAGGGA TTCGCACAGGACACAGGACACACACTGCAACGAACGCTCGACGTACATTG TACATATTCAGAACTATTGAGAACTTGCAGCAGTCAAGAACTTGCGCCTA AATATGTCCAAAATCTAGAAACTTGGCCGCAAGACCAGGTGTTCAGCGAA GAAACCTACGCTTGAACCTATTCAGTCGCCGTGGGGGTAGGTACCCCATA GACGAAATTGGAAACAAACCTCGGCCAAGATATGAGGTTATATAGTGGTG GCGCTTTCTGCGTACAGCTGTGCGCAATTTTCGATCAGACTTACCTCTAC TTCGTACTTTGTTGTCTGTTTGCCAGGAATGCTGTTCAGCGTGGTGCTTG CAGAGCAACGCTGGCTGCACCACCCCTACGGAATCTTGACAAACCTTGCA TTGTCGCATTACTTTGACAGGCCGAATCGAGACTTCTGGCGATCTCTAGG GGTAGTTTGCGACGACAAGGTGGCGAAGGCCAAGGAGCTGCTCGGGGAAA CCGAGGAGGGCGTCGCGACTGGGGGGCTGCATAAGGTGGGCCACTACCGC AGACGCCAACGATTGCAGTCGTTCAGCTTGAACGAGCGTGTGTGGAAATT TCACATTGCGCCTGTGAGCAAGTCGCTTGCAGGACATCAGCACTGGCGTC CTGTGTCGGCTGCTGATCGGTTACGGGTTTTTGGGCCCACAGCCGTTTGT TGTGGGTGCTCCGCTGTACTTGAAAACCCAACCAGTACCTGCGTGAGTTT CTCTCTGTGAGGCTGATTTTCGTTGCTGCTGCTGCTGCTGCGTTTATCCG TTCGCTGATCAGACGGTCATCGACGACGTCACGGCCAAGTTCGAGAACCA GACCGTGGAAGAGTTGGCTGAACAGAAGACCAAGATCCAGGACAAGCTGG ACTCCGGCGAGGCTTCGGTGGATACAGAGTTCTGGGAGGCCGTGCTGAAA GAGCTACACGTTTTCCAGGTGCAGTGGTTCTCTTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1433:27726..32611+

>mRNA_E-siliculosus-1a_F_contig1433.2547.1 ID=mRNA_E-siliculosus-1a_F_contig1433.2547.1|Name=mRNA_E-siliculosus-1a_F_contig1433.2547.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2442bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1433:27726..32611+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGAAGCGTGGCCGACACAGGAGTCCATCATCCTCTTCCTCGGAGGA
GAGGGGCCGTCGGAAGTCTTCCAAGTCTAGCAAACAGAAGCAGATGGGGA
AGCGTGGCCGACACAGGAGTCCATCATCCTCTTCCTCGGAGGAGAGGGGC
CGTCGGAAGTCTTCCAAGTCTAGCAAACAGAAGCAGGACAAGGACAAGAG
AAAGAAGCAATCCAAGCAACCATCTCGCTCGGAATCGAGGTCGCGTTCAC
CACCTCAGAGCAAGAGCAGTCGCCGCAAGCGGGACGATCGCAGCCGAAGC
CCGAGTGTCGATGAAGAGGCACGGAGGAGGGCTAAGGAGGCCAGGACAAG
GACAAGAGAAAGAAGCAATCCAAGCAACCATCTCGCTCGGAATCGAGGTC
GCGTTCACCACCTCAGAGCAAGAGCAGTCGCCGCAAGCGGGACGATCGCA
GCCGAAGCCCGAGTGTCGATGAAGAGGCACGGAGGAGGGCTAAGGAGGCC
AGGCGGGAGCAGAAGTACCGGGAGAAGTTGGCGCTGAAGAAAGCTCAGCG
GCGCGCGGCAGAATCGGAACACGAAAAGGCGGAGAGGAAGCGAAAAGCCA
AAATGGACGGCACGGCGGCGCACTTCGGGCGGGAGCAGAAGTACCGGGAG
AAGTTGGCGCTGAAGAAAGCTCAGCGGCGCGCGGCAGAATCGGAACACGA
AAAGGCGGAGAGGAAGCGAAAAGCCAAAATGGACGGCACGGCGGCGCACT
TCGGGTACACAAACGATATCAACCCGTTCGGCGATTCTAACCTGACGGAG
CAGTTCGTTTGGGGCAAGAAGAAGGAGAAGGAGGGAACTGCCGACAAGCT
GCTCACCAAGCGAGACATGCGCGACATGCAGAAAAAGAACATCGATGAGA
TCGAAAAGGTACACAAACGATATCAACCCGTTCGGCGATTCTAACCTGAC
GGAGCAGTTCGTTTGGGGCAAGAAGAAGGAGAAGGAGGGAACTGCCGACA
AGCTGCTCACCAAGCGAGACATGCGCGACATGCAGAAAAAGAACATCGAT
GAGATCGAAAAGGTGCGAAAGAGGCGAGACGATGCCGAGGCGGAGCGCGA
GGAAATGGATCGCCTCAAGGCGGAAGAGTCGAGGCTCCGCGAGCAGCAGC
AGTACGGCGACTGGCAGAAGAAGGAAGAGCAATTCCACCTGCAGCAGGCC
TCGCAGAGGTCTAAGGTGCGAAAGAGGCGAGACGATGCCGAGGCGGAGCG
CGAGGAAATGGATCGCCTCAAGGCGGAAGAGTCGAGGCTCCGCGAGCAGC
AGCAGTACGGCGACTGGCAGAAGAAGGAAGAGCAATTCCACCTGCAGCAG
GCCTCGCAGAGGTCTAAGATTCGCCTGGTGGAAGGGCGGGACCGCCCAAT
CGACCGCCTGGCGAAGAACGTGATTCTCTTCGGGGAGCAAGATCCAGGGG
AAGGAGAAATTCGCCTGGTGGAAGGGCGGGACCGCCCAATCGACCGCCTG
GCGAAGAACGTGATTCTCTTCGGGGAGCAAGATCCAGGGGAAGGAGAAGT
GGGCATCAAGTACGGCGGGAAGGGAGACGTGGACGTTACCGGCTTGGAGA
TGGAGCTCAGAGAGCCATACAAGGTGGGCATCAAGTACGGCGGGAAGGGA
GACGTGGACGTTACCGGCTTGGAGATGGAGCTCAGAGAGCCATACAAGTT
GTTCGATGGCTTGACCTTGGAGGAGCTCGAGCAGCTACAGACGGAGATCC
TGCAGTACCAAGAGCTCGTCGGGGAGAACGGTTGTTCGATGGCTTGACCT
TGGAGGAGCTCGAGCAGCTACAGACGGAGATCCTGCAGTACCAAGAGCTC
GTCGGGGAGAACGGGCCGAATCGAGACTTCTGGCGATCTCTAGGGGTAGT
TTGCGACGACAAGGTGGCGAAGGCCAAGGAGCTGCTCGGGGAAACCGAGG
AGGGCGTCGCGACTGGGGGGCTGCATAAGGCCGAATCGAGACTTCTGGCG
ATCTCTAGGGGTAGTTTGCGACGACAAGGTGGCGAAGGCCAAGGAGCTGC
TCGGGGAAACCGAGGAGGGCGTCGCGACTGGGGGGCTGCATAAGACGGTC
ATCGACGACGTCACGGCCAAGTTCGAGAACCAGACCGTGGAAGAGTTGGC
TGAACAGAAGACCAAGATCCAGGACAAGCTGGACTCCGGCGAGGCTTCGG
TGGATACAGAGTTCTGGGAGGCCGTGCTGAAAGAGCTACACGTTTTCCAG
GTGCAGTGGTTCTCTTGAACGGTCATCGACGACGTCACGGCCAAGTTCGA
GAACCAGACCGTGGAAGAGTTGGCTGAACAGAAGACCAAGATCCAGGACA
AGCTGGACTCCGGCGAGGCTTCGGTGGATACAGAGTTCTGGGAGGCCGTG
CTGAAAGAGCTACACGTTTTCCAGGTGCAGTGGTTCTCTTGA
back to top