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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1433.2545.1 vs. uniprot
Match: D7FKP7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKP7_ECTSI) HSP 1 Score: 255 bits (651), Expect = 1.730e-85 Identity = 133/145 (91.72%), Postives = 135/145 (93.10%), Query Frame = 1
Query: 1 MDVMHQRAREEEWMPAGRPPSGRRRSLGNRRCILRGEGLCRTESGEHDMDTRRALARTEXXXXXXEAALKDLVAMFKVESEEQLPVSFDVHRLLELEEGERRSFVKNMLQTYSSCTDATPMSIDSFIDKYLEQTRILDALLAAGI 435
MDVMHQRAREE+WMPAGRPPSGRRRSLGNRRCILRGEGLCRTESGEHDMDTR ALARTE EAALKDLVA+FKVESEE LPVSFDVHRLLELEEGERRSFVKNMLQ YSSCTDATPMSIDSFIDKYLEQTRIL ALLAAGI
Sbjct: 1 MDVMHQRAREEDWMPAGRPPSGRRRSLGNRRCILRGEGLCRTESGEHDMDTRGALARTE------EAALKDLVAIFKVESEEHLPVSFDVHRLLELEEGERRSFVKNMLQAYSSCTDATPMSIDSFIDKYLEQTRILAALLAAGI 139
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 438 |
| Model size | 438 |
| Exons | 3 |
| Ec32 ortholog | Ec-21_001660.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1433.2545.1 >prot_E-siliculosus-1a_F_contig1433.2545.1 ID=prot_E-siliculosus-1a_F_contig1433.2545.1|Name=mRNA_E-siliculosus-1a_F_contig1433.2545.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=146bp
MDVMHQRAREEEWMPAGRPPSGRRRSLGNRRCILRGEGLCRTESGEHDMD
TRRALARTEALARTEEAALKDLVAMFKVESEEQLPVSFDVHRLLELEEGE
RRSFVKNMLQTYSSCTDATPMSIDSFIDKYLEQTRILDALLAAGI* back to topmRNA from alignment at E-siliculosus-1a_F_contig1433:19076..22215- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1433.2545.1 ID=mRNA_E-siliculosus-1a_F_contig1433.2545.1|Name=mRNA_E-siliculosus-1a_F_contig1433.2545.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3140bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1433:19076..22215- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGTGATGCACCAAAGGGCCCGAGAAGAAGAGTGGATGCCGGCCGG
CAGGCCACCGAGCGGGCGACGGCGCAGCTTGGGGAACCGGCGGTGCATCC
TACGAGTGAGTTTAAAATGCGTCAAATCTGGATCTATCGGGCCGGCTCGG
TCGTCAGAAACACCTACTTTCAGCAAGGTCTTTCAGGGTCCAAACGATCG
AGCACAGGCTCTTCTAAACGATTAACAAACAGTCTGTATGACTACAGTAA
TATGTACAGTAGATTTCTGACATTACTTCTAAATGATAACGGTGATGTGT
GGTGCCGGCGGCTGAGCCCATTACTTCCAAGGGTGCACTCGGTAACGGTT
TTTTAGGCGGACAGGTTATCGGCGGTAATGCCATTTGGCCGTAATTTTTT
TGGCGATAGGCGGAAATGCGTTTTTCGGCGGTAACGACTTTGTTGGCGGA
GGCGATAAAACCTTTTTTTGGCGGTAGTTTTTCGGCGGTATTGCTATACG
GCGGTAATTGTTTCGGCGGTAGGCGGTAATACGATTTTCTGCGGTAACGA
CTGGGGCGGAAGCAGTAAAACAGAAATTATGGCGGTAATTTTTCGGCGGT
AACGCCATACGGCGGAAATTGTCTTGGCGGTAGGTGGTATCGTGTTTTTT
GGCGGTAACGAGTTTGGCTGAGGCGGTAAAACCAAAAAAATGGCGGTGAA
ACGGCGGATTACCGGGACCGCCCACCACGGCGGTAATGATTGTCATTGCG
GATGGCCACAACTTCAAGCGAAATTACCGAATAAACCCTTGAATTATTTC
TGACGCCGTTTTCCTTTTTTTCCCTAGAATATGGTCCTCGATTTCTTGTG
GATCTAGCTGAGGGAGCGGGCCAGCACTGCTGGTGTTTTTGCGGTGGCAG
CAGCGGCGTCGTGGAAAATCAGCCAGTTGTCTGTCAACATGTCTCTTTCT
ACGTGTGGAATTGCTTTATTTTCATGTATGCATAGGACGTTCCAGCAAGA
GTACCCTACTTGCGCGTGTGTTTCGCACAACTACAAGTGACACTCACATT
TGGCGGGCGCTGGCGAGCTCTAACCATGAATGTTTTGATGCGGGTGTTGG
TTGAATGTTACGTCTGGACTAAAGGGAGAGGGCTTATGCAGAACGGAATC
CGGCGAGCACGACATGGATACACGAAGAGCACTTGCAAGGACCGAAGCAC
TTGCAAGGACCGAAGAGGCGGCCTTGAAGGACCTCGTCGCGATGTTCAAG
GTACAATTCTACAAGACGTTCTGTTTTTGTGTTTCGCCCTCTCTTGCTTT
GAGTCGCTGCCTGTATGCATAGATCGTTCGTTAGACCGATGTTTATGGTC
TCAAAATCTTGGAAATTTATCTTCAAATGTTGTCAAACATTTGCGCGCGA
ATATCTGCCAGAGGAACATTTGAGTATCGCTTTTATGCGCAAAAATATCT
TATCGTGTGGTTTTGTGGTTTTCTCGGAATGCATCAGAAGTGCGGCGGGA
ATCGTGGTCTACTGCTACCAAACGATTTGTGACAGACAAACCAAATGCGT
CATGGAAACTGCACGTAACGAGCTCGCAAAGGGCTCCCGACAACCCTTGA
TGCACTGAGCTGATGCTGTGCCCGCCAATATGTGGCGATAGCGCTCCGGG
CGTGCGAGAAAAAATGTTCTCGGTGTCAAAAAGAGACCAGAACGTGCGTC
AGCGCTTCCGAACGGCAAAAAGTCGGCCGCTTGAGAGGAGACGTGAGTAC
AAAACTATCCAGCTCTCGCCCGTTAGACAATCGATTCATGTTTTGTCTTC
TTCGGTGTCTTCTCCATCGACGACTCTCATCCGGTTGCGCGTGGGTTGGC
AGTGGCCGTGCTCAGTCGGCAGGGAGGCACATCGTTGTGCGCACAGAGTT
GTGGACACAACGTTTTTTCCGGTCTATTTTTCACTTGAATATAGAGGGCT
TGTTCCTCCGTCCTAAACAAGAATTTTTCAACACATCGAGTTCACAGCGA
CGAGCTACCCTGTCTGTTGAGTACGTCCACTGCTGAACCACGCACACCCG
GATGAGAGCCGTTGATGGAGAAGACACCCAAGAAGACAAAACATGAATCG
ATGGTCTAGAGGACTAGAGCTGGTTAGTTTTGTACTCAAGTCTCCTCTCA
AGCAGCCGACTTTTTGCCGTTTTGGGACACAAACCACGTTTTCTCAGTGC
CCTCCAAACCACCCCTGTCTGTTTGTTTTTTTGTGCACGCTTGACGAGCT
CCCGCCAAGTATCAGCCGGCAATACGTTGACACGTTGACTCTAGGGATGT
CCGGATCCCTCTGTGAGCTTGCTACGTTGAGTGTGCGCTGCGCAGTGGTT
GGTTGGTGTTTAGGACGGAAGGGGCAGCCGGCTACTAATCTCGCCGCTAT
TGGAAAATATTTTCGCGACCTGCCCCATTTCAAAATGTTTGTCGAACAAT
TTGTCGAACGAGCGACTTTTGCCCCATTTGAAAATCTTTGGGGAGATTTT
GCCAAAGATTTTCTCCCATAAAAAGTGAATCAAAGTCTTGTTCCGCAAAT
CTTTGAAAATTTCGACATTTTCGCAAAGATTTGGCGACCATAAACATGGG
TCTTACATCGTCGCCATCAATTTTATTTGAGTTTTTTCCTTTTTTAGAGT
AAGTTAGCCTGTGACCAAGGGAGGGAATCGACTGCGTCAAGTGCTATATC
AGGACGGACGGAGGGAGGAGAGATCGGAATGGGGGTTTCCCAGTAGACTT
TGCAAACGTGGGGGAGTGGCAACTAGCTCAACTTCGAGTAACGAATACGA
CGGGATCGCACGGACGATAAGGAGGGAATTCCAACCCACGAGCCAGATAG
AACTTGTGCTGGTATCGCGAGCTAGTGGGTAACAACCTTCCACCTTCCAA
CACCCCACACCCACACTTTCCATTGCTCCACAGGTAGAGAGCGAGGAACA
ACTCCCAGTATCGTTCGACGTGCACCGGCTTTTGGAACTAGAGGAAGGCG
AGCGACGGTCTTTCGTGAAAAACATGCTCCAAACCTACTCGTCTTGTACC
GATGCGACCCCGATGTCCATCGACAGCTTCATCGACAAGTACCTGGAGCA
AACGAGAATTCTTGATGCGCTCTTGGCGGCCGGAATCTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1433:19076..22215- >mRNA_E-siliculosus-1a_F_contig1433.2545.1 ID=mRNA_E-siliculosus-1a_F_contig1433.2545.1|Name=mRNA_E-siliculosus-1a_F_contig1433.2545.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1433:19076..22215- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGTGATGCACCAAAGGGCCCGAGAAGAAGAGTGGATGCCGGCCGG
CAGGCCACCGAGCGGGCGACGGCGCAGCTTGGGGAACCGGCGGTGCATCC
TACGAATGGACGTGATGCACCAAAGGGCCCGAGAAGAAGAGTGGATGCCG
GCCGGCAGGCCACCGAGCGGGCGACGGCGCAGCTTGGGGAACCGGCGGTG
CATCCTACGAGGAGAGGGCTTATGCAGAACGGAATCCGGCGAGCACGACA
TGGATACACGAAGAGCACTTGCAAGGACCGAAGCACTTGCAAGGACCGAA
GAGGCGGCCTTGAAGGACCTCGTCGCGATGTTCAAGGGAGAGGGCTTATG
CAGAACGGAATCCGGCGAGCACGACATGGATACACGAAGAGCACTTGCAA
GGACCGAAGCACTTGCAAGGACCGAAGAGGCGGCCTTGAAGGACCTCGTC
GCGATGTTCAAGGTAGAGAGCGAGGAACAACTCCCAGTATCGTTCGACGT
GCACCGGCTTTTGGAACTAGAGGAAGGCGAGCGACGGTCTTTCGTGAAAA
ACATGCTCCAAACCTACTCGTCTTGTACCGATGCGACCCCGATGTCCATC
GACAGCTTCATCGACAAGTACCTGGAGCAAACGAGAATTCTTGATGCGCT
CTTGGCGGCCGGAATCTGAGTAGAGAGCGAGGAACAACTCCCAGTATCGT
TCGACGTGCACCGGCTTTTGGAACTAGAGGAAGGCGAGCGACGGTCTTTC
GTGAAAAACATGCTCCAAACCTACTCGTCTTGTACCGATGCGACCCCGAT
GTCCATCGACAGCTTCATCGACAAGTACCTGGAGCAAACGAGAATTCTTG
ATGCGCTCTTGGCGGCCGGAATCTGA back to top
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