mRNA_E-siliculosus-1a_F_contig14317.2537.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14317.2537.1
Unique NamemRNA_E-siliculosus-1a_F_contig14317.2537.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 5.660e-15
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:    2 KHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 136
            +HA  HIPEAQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   75 RHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119
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BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.660e-14
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:    2 KHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 136
            KHA   IP+AQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   10 KHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54
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BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 67.4 bits (163), Expect = 1.370e-13
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 2 
Query:    2 KHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 130
            KHA  H P+AQ AFK LMIH +LQ A RIAFRCVLHRCG QDI
Sbjct:   35 KHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77
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BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Match: K5UIC4_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5UIC4_PHACS)

HSP 1 Score: 65.1 bits (157), Expect = 7.140e-13
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   22 PGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQR 153
            PGSARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKV+ R
Sbjct:    6 PGSARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVVYR 49
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BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Match: A0A0E9NCQ7_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NCQ7_SAICN)

HSP 1 Score: 67.8 bits (164), Expect = 2.470e-12
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   22 PGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 147
            PGSA CVQ FDDSL+SA   TYRISLRSSS+WEPR P LKVL
Sbjct:  127 PGSAMCVQRFDDSLNSAIHITYRISLRSSSMWEPRDPLLKVL 168
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BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 3.670e-12
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 QACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 147
            + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    7 ETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
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BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 3.750e-12
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 QACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 147
            + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    7 ETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
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BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 5.100e-12
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 QACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 147
            + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    7 ETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Match: R1D5C4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5C4_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 5.100e-12
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 QACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 147
            + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    7 ETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 62.4 bits (150), Expect = 1.100e-11
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 2 
Query:    2 KHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 130
            KHA  + P+AQ AFK+LMIH +LQ   RIA RCVLHRCG QDI
Sbjct:   28 KHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14317.2537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A524MI88_9PROT5.660e-1573.33Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
A0A1E7F0G0_9STRA3.660e-1471.11Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
B8CEF4_THAPS1.370e-1374.42Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K5UIC4_PHACS7.140e-1375.00Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]
A0A0E9NCQ7_SAICN2.470e-1278.57Uncharacterized protein n=1 Tax=Saitoella complica... [more]
R1EX34_EMIHU3.670e-1267.35Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1ESX1_EMIHU3.750e-1267.35Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1D6I6_EMIHU5.100e-1267.35Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
R1D5C4_EMIHU5.100e-1267.35Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
K0S3C5_THAOC1.100e-1167.44Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14317contigE-siliculosus-1a_F_contig14317:974..1129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size156
Model size156
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2E6PU@1,2SDCQ@2759
Seed eggNOG ortholog2903.EOD03899
Seed ortholog evalue2.5e-08
Seed ortholog score63.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927946.1955438-CDS-E-siliculosus-1a_F_contig14317:973..11291622927946.1955438-CDS-E-siliculosus-1a_F_contig14317:973..1129Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14317 974..1129 -
1696318748.2184737-CDS-E-siliculosus-1a_F_contig14317:973..11291696318748.2184737-CDS-E-siliculosus-1a_F_contig14317:973..1129Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14317 974..1129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14317.2537.1prot_E-siliculosus-1a_F_contig14317.2537.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14317 974..1129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14317.2537.1

>prot_E-siliculosus-1a_F_contig14317.2537.1 ID=prot_E-siliculosus-1a_F_contig14317.2537.1|Name=mRNA_E-siliculosus-1a_F_contig14317.2537.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=52bp
QACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQ
R*
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mRNA from alignment at E-siliculosus-1a_F_contig14317:974..1129-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14317.2537.1 ID=mRNA_E-siliculosus-1a_F_contig14317.2537.1|Name=mRNA_E-siliculosus-1a_F_contig14317.2537.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=156bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14317:974..1129- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGCATGCTCCCAGGCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTT
TGATGATTCACTGGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGC
GTTCTTCATCGTTGTGGGAGCCAAGACATCCGTCGCTGAAAGTTTTACAA
CGTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14317:974..1129-

>mRNA_E-siliculosus-1a_F_contig14317.2537.1 ID=mRNA_E-siliculosus-1a_F_contig14317.2537.1|Name=mRNA_E-siliculosus-1a_F_contig14317.2537.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=312bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14317:974..1129- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGCATGCTCCCAGGCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTT
TGATGATTCACTGGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGC
GTTCTTCATCGTTGTGGGAGCCAAGACATCCGTCGCTGAAAGTTTTACAA
CGTTAACAAGCATGCTCCCAGGCATATCCCGGAAGCGCAAGATGCGTTCA
AAGTTTTGATGATTCACTGGATTCTGCAAGTCGCAAGACGTATCGCATTT
CGCTGCGTTCTTCATCGTTGTGGGAGCCAAGACATCCGTCGCTGAAAGTT
TTACAACGTTAA
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