mRNA_E-siliculosus-1a_F_contig143.2529.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig143.2529.1
Unique NamemRNA_E-siliculosus-1a_F_contig143.2529.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig143.2529.1 vs. uniprot
Match: D8LQ97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ97_ECTSI)

HSP 1 Score: 511 bits (1317), Expect = 4.230e-173
Identity = 264/271 (97.42%), Postives = 265/271 (97.79%), Query Frame = 2 
Query:  806 MERDYYNADPRLVDPLLARVIRALKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPVSRGIIFGDNQQAVSHDKGEIIAEYVGLLLHNARRAVSEHVGAKTAGDAARGGLSEPGGVKVGDVESSGGRTALAGSLSPKRPRKCVLVDNTSKKCERAAETFARHAAAAGGGLELHTLHFTEAENMVDSPEALRQLRIILARLKERGLIGVDLIAEDILVTPVGGVRRGAGDKVKAAAAAACGPDGKGDRGG 1618
            MERDYYNADP+LVDPLLARVIRALKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPVSRGIIFGDNQQAVSHDKGEIIAEYVGLLLHNARRAVSEHVGAKTAGDAARGGLSEPGGVKVGD ESSGGRTALAGSLSPKRPRKCVLVDNTSKKCERAAETFARHAAAAGGGLELHTLHFTEAENMVDSPEALRQLRIILARLKERGLIGVDLIAEDILVTPVGGVRRGAGDKVKAAAA AC PDG   RGG
Sbjct:    1 MERDYYNADPKLVDPLLARVIRALKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPVSRGIIFGDNQQAVSHDKGEIIAEYVGLLLHNARRAVSEHVGAKTAGDAARGGLSEPGGVKVGDGESSGGRTALAGSLSPKRPRKCVLVDNTSKKCERAAETFARHAAAAGGGLELHTLHFTEAENMVDSPEALRQLRIILARLKERGLIGVDLIAEDILVTPVGGVRRGAGDKVKAAAATACVPDGNRGRGG 271
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig143.2529.1 vs. uniprot
Match: A0A6H5KKZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ7_9PHAE)

HSP 1 Score: 516 bits (1329), Expect = 6.650e-173
Identity = 270/295 (91.53%), Postives = 274/295 (92.88%), Query Frame = 2 
Query:  734 SALMARLEAKLGPSSETLRVIRQEMERDYYNADPRLVDPLLARVIRALKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPVSRGIIFGDNQQAVSHDKGEIIAEYVGLLLHNARRAVSEHVGAKTAGDAARGGLSEPGGVKVGDVESSGGRTALAGSLSPKRPRKCVLVDNTSKKCERAAETFARHAAAAGGGLELHTLHFTEAENMVDSPEALRQLRIILARLKERGLIGVDLIAEDILVTPVGGVRRGAGDKVKAAAAAACGPDGKGDRGG 1618
            SALMARLEAKLGPSSETLRVIRQEMERDYYNAD RLVDPLLARVIR+LKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPVSRGIIFGDNQQAVSHDKGEIIAEYVGLLL          VG KTAGDAARGGLSEPGGVKVGD ESSGGRTALAGSLSP+RPRKCVLVDNTSKKCERA ETFARHAA AGGGLELHTLHFTEAENMVDSPEALRQLR+ILARL+ERGLIGVDLIAEDILVTPVGGVRRGAGDKVKAAA  AC PDGK  R G
Sbjct:  104 SALMARLEAKLGPSSETLRVIRQEMERDYYNADLRLVDPLLARVIRSLKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPVSRGIIFGDNQQAVSHDKGEIIAEYVGLLLXXXXXXXXXXVGEKTAGDAARGGLSEPGGVKVGDGESSGGRTALAGSLSPRRPRKCVLVDNTSKKCERAVETFARHAAMAGGGLELHTLHFTEAENMVDSPEALRQLRVILARLQERGLIGVDLIAEDILVTPVGGVRRGAGDKVKAAAEVACVPDGKSGRSG 398
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig143.2529.1 vs. uniprot
Match: A0A835YVM2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.980e-21
Identity = 57/127 (44.88%), Postives = 78/127 (61.42%), Query Frame = 2 
Query:  650 ILRETCLLPLVAPYHAFLGAFFIDARDFSALMARLEAKLGPSSETLRVIRQEMERDYYNADPRLVDPLLARVIRALKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMV 1030
            + R+TCL+      H F    ++  R     +A   +    +SE +R I+ EMER+YY++D +LVDPLLAR++R LK+QGH VFGLTSN     H+   +  LA+YKIRFS P +RGELP    L V
Sbjct:   65 VTRDTCLV------HGFQHTTYLLER-LRTRLAETGSSGARASEVVRKIQAEMEREYYDSDIKLVDPLLARLVRGLKVQGHHVFGLTSNEPFSEHSITTVAALAQYKIRFSDPWIRGELPLCALLFV 184
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig143.2529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ97_ECTSI4.230e-17397.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKZ7_9PHAE6.650e-17391.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVM2_9STRA6.980e-2144.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig143contigE-siliculosus-1a_F_contig143:7369..12868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size879
Model size2748
Exons5
Ec32 orthologEc-26_005620.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927943.7613578-UTR-E-siliculosus-1a_F_contig143:7368..84951622927943.7613578-UTR-E-siliculosus-1a_F_contig143:7368..8495Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig143 7369..8495 -
1696318747.2734826-UTR-E-siliculosus-1a_F_contig143:7368..84951696318747.2734826-UTR-E-siliculosus-1a_F_contig143:7368..8495Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig143 7369..8495 -
1622927943.8252711-UTR-E-siliculosus-1a_F_contig143:10615..110701622927943.8252711-UTR-E-siliculosus-1a_F_contig143:10615..11070Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig143 10616..11070 -
1696318747.3215268-UTR-E-siliculosus-1a_F_contig143:10615..110701696318747.3215268-UTR-E-siliculosus-1a_F_contig143:10615..11070Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig143 10616..11070 -
1622927943.840838-UTR-E-siliculosus-1a_F_contig143:12581..128681622927943.840838-UTR-E-siliculosus-1a_F_contig143:12581..12868Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig143 12582..12868 -
1696318747.3301938-UTR-E-siliculosus-1a_F_contig143:12581..128681696318747.3301938-UTR-E-siliculosus-1a_F_contig143:12581..12868Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig143 12582..12868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927943.7730925-CDS-E-siliculosus-1a_F_contig143:8495..90411622927943.7730925-CDS-E-siliculosus-1a_F_contig143:8495..9041Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 8496..9041 -
1696318747.2825024-CDS-E-siliculosus-1a_F_contig143:8495..90411696318747.2825024-CDS-E-siliculosus-1a_F_contig143:8495..9041Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 8496..9041 -
1622927943.7863197-CDS-E-siliculosus-1a_F_contig143:9518..96181622927943.7863197-CDS-E-siliculosus-1a_F_contig143:9518..9618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 9519..9618 -
1696318747.2917511-CDS-E-siliculosus-1a_F_contig143:9518..96181696318747.2917511-CDS-E-siliculosus-1a_F_contig143:9518..9618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 9519..9618 -
1622927943.8016555-CDS-E-siliculosus-1a_F_contig143:10066..101801622927943.8016555-CDS-E-siliculosus-1a_F_contig143:10066..10180Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 10067..10180 -
1696318747.3019657-CDS-E-siliculosus-1a_F_contig143:10066..101801696318747.3019657-CDS-E-siliculosus-1a_F_contig143:10066..10180Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 10067..10180 -
1622927943.8119621-CDS-E-siliculosus-1a_F_contig143:10496..106151622927943.8119621-CDS-E-siliculosus-1a_F_contig143:10496..10615Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 10497..10615 -
1696318747.3115318-CDS-E-siliculosus-1a_F_contig143:10496..106151696318747.3115318-CDS-E-siliculosus-1a_F_contig143:10496..10615Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 10497..10615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig143.2529.1prot_E-siliculosus-1a_F_contig143.2529.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig143 8496..10615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig143.2529.1

>prot_E-siliculosus-1a_F_contig143.2529.1 ID=prot_E-siliculosus-1a_F_contig143.2529.1|Name=mRNA_E-siliculosus-1a_F_contig143.2529.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=293bp
MARLEAKLGPSSETLRVIRQEMERDYYNADPRLVDPLLARVIRALKIQGH
SVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPV
SRGIIFGDNQQAVSHDKGEIIAEYVGLLLHNARRAVSEHVGAKTAGDAAR
GGLSEPGGVKVGDVESSGGRTALAGSLSPKRPRKCVLVDNTSKKCERAAE
TFARHAAAAGGGLELHTLHFTEAENMVDSPEALRQLRIILARLKERGLIG
VDLIAEDILVTPVGGVRRGAGDKVKAAAAAACGPDGKGDRGG*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig143:7369..12868-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig143.2529.1 ID=mRNA_E-siliculosus-1a_F_contig143.2529.1|Name=mRNA_E-siliculosus-1a_F_contig143.2529.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5500bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig143:7369..12868- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTCTCTGACCATGTGGCGATCAACGTGGCAACCTTGCGTTCGATTGATG
GCAGCTCGAGGTTGGTGAAAACTACGTTGCAATGTTGTTGCAGTTCGAGA
AGCGAGTGCCTCCGCGTCGGAGTTCAGTCCAAGTTGACGTTGATCACGCC
GCACACGCCGCACACGCGCCGCAGGTCCCTCCAGCAAGCTTAGCTCCCCT
ACAAGACCAGCTAGGCTTCTGTCGGGACAGGCTGACTCTCTTACGGGAAC
ACCCACTGCTTGCAAAGCACCCAGGATTGGTGTACGGGTGAGAGCGCCCA
GCGCCTGAAGTGATCCACAGCTGCTACACGTAGACGCATGCAATACCGCG
GAGATTGTTGTCAGTACACTTTTGCAGTGGACGTAACGAGTGTCACACAG
ATCTTTGGTTCGCGCTTGTACGCCATCGTGTGCTTAGCTTCCAACAACTA
TGCATGTGTGTAGCTGTTCTGATAGCGAAGTCTATGTGTCCCCTTTGTAT
ACGCATATTTTGTCCCAGCAGGGCTGATCGAACCTACAACACTCCCCTCC
CCGTGAGGTGAGCATGCGGACCATCTCTACCACTGCTGTACCGAACATTG
TTATGCGCATGCCCCCTCTCCCTGCGGCTGAAAACAGCGTCGACATCTCT
CGGCTGTACCAGACCAACACACCACCGCACGTCCAACACACTTGGCCTAT
TGACTGATCAATACGCCCCACTCAAACGTACCTTCGTGTATCCAGTTAAT
TAGACGTGCCTGTCGACCAGGACAATTTTGTACTTCGTTTTGATCAACTC
GCTACTCGTGGTCGCCATGATGCCCGTTGTACTTGGATCTACGTGTTAAC
GTCATACGTGACTACGAGGTTCCCCTGCGGGAGGTAGGTGATTTGCCTCC
CGGGGGCGACGCAAGAGGACATGGTCAATCAATGCCATCGCGGTCGCATG
GTTGGTCGCCATAACGTTCGGTAGTGCCGGCTTGCGTGCAACCTGTATAC
TAATAATTTGCCTGGAATTTGCGTCATATGTGCGGGGTATTTTTTTTCTC
CCGCCGTGACTTTCCCTTGTGCGCGAGTGAGTGGTTTTTGTTAGAGGTTT
TCTTCAGGTCCTACTGCTGTAATCCGCTGCGTTTGATCACTTTCTCTTCT
TGTGTGATCGTGTTTCCCATGGTCTGTGGGACTTTTTCACGCATACACAC
CAGCAACAACGGATCAAAGAGACGCTCAACGTGCCCAAGAACAGTCACAG
ATAGATGTAGACTGCTACCTCACCGTACCAAACTTCTAAGTTTACTTTTT
CGATTTTTCGGAATTGAAATGTACAAAATTTACCGCTGCCAGAGTTGTTC
GAGAGGACTTCTGTGTCGCATGGCTCTTGATCCCCGCTGTGGGTACGCAT
GCGCCAGTTGCCGTGTGGTGGTTGTGTGCACAACAATCACAGCAGCATGT
GTGTGGGCGCGTGGCGCGTGGCGCGAGGTAAAAAAAAAGTTATGTTCTCA
GTTTTCGTGCCGTTCGAGGAGGCTTTTATGGTTCGGATTCCCAACCCTAA
CCCTGACCCTAACGTGCACCACCGGTGTCTCGCGAGCCCCACACGTAACG
GGTAATATACCGACGGGTCCTCTGCGTGCCATGCAGAAGAAGGTGCGCGA
AAAAACGCTGTCCCAGCGGAGAAAAACGACTGCGAAAAGTAAAAAAAATC
GAAATCCTGCACATGCATATAGGAACCACTTGTTCGCCGCTATGTTTCAC
CCACGGGCGATCCTTCTATACAACTTAACCTTCCACCCTTTTCACCAGGA
GGCGAGCGACACCCTGGATCTGATCGACCAGCTTCTGTGGGCCTTGGGCC
CGGCAGATTCGGGAGAGGCTGGCTTCGTATTCTTCGACTTGGACGAGACC
CTCATCACGCGAGACACCTGCCTTGTCGACGGTCTCGGTAGCACAAGGTT
AGCGACCGATAGTCAACGACGCCGGTCACCCGTGTGGCAGCTGCTGCTGC
CAATGCCAAGGGCCCTTGCTGCGTCGAGTGAGACTTGCACGTCCCTGGCG
CCCCTTTCCACCGTGGTTCAACTTAACTGCTGTCGCTGCAATCACCCACG
TGTGCTCCCGAAGTTCTTCGCCCCCCTTTTGACCCTTGGCGGCAGCGGAT
CAGCAGCTACATTCTTCGTGAAACCTGTCTATTACCTCTGGTTGCGCCGT
ACCATGCGTTTCTTGGTGCCTTTTTTATTGATGCTCGTGATTTTAGCGCG
TTGATGGCGAGGCTGGAGGCAAAGCTGGGGCCCTCAAGCGAAACCCTTCG
CGTCATCCGCCAGGAGATGGAGAGGGACTACTACAACGCAGATCCAAGGC
TCGTTGATCCGCTGTTGGCGAGGTGCGAGCACCCGCCATGCCTTTCACAC
GCATTGGGCACGTGGTGTCAAAGAATAGCCTGAGAGGGGCCAGGCGACAT
CGTCGGAGATCTCTGCAACGCAAAATCGCGCACAGCAGTAGTGGTGGTGT
TGCAAGGCCATGGCGAGTTCAACAGTTCTGCACGCTCCCCACGCCCATGC
GCTGAGAGAGCCCTCTCCGACAGGTTTTATGACTGTGCCAGGAATAAGAA
CGTCAACCGATGGTTTTGTTAATTATCCACGAGCTTCGGCAACACCAAAG
AAGCGCACCTCGCCCCCGCCCCGCCAACACGCTTCCAGAGTTATTCGGGC
GCTCAAGATTCAAGGCCATAGCGTGTTTGGCTTGACTTCCAACGCGTTGG
ATCCTGTTCACGCACCGCGGATCCTGGAGACTCTGGCCAAATACAAGATC
AGGTGGGGTTTGACGCCTAAACCTTCGTGGATCAAGTTGGCGCTTCTCCT
GTAAGCCAAGGCCACCACCACCGCCACCATCTGAAGCTTACGGGACGCAC
GCTGATCGTTTGTGAACACGCCCTCGTGGTTGCCGCCCGAAGAACATGCA
AGAGGGTGCCGACAACGAAACCAAGGCAATTGAAAGGGGCTAGCGCAGAA
CCTATCGCTGAGAGAGACTTTGCGTGAAATGAAGTTCAGTACATTCGATG
ATGCCTTGTACATCCGTGGGTGTCGTTAAAAGCTCTCCGTTCCAGCAACC
TACGTATGCGTTCAGCATGCCACCTAGTTCGATGCAGTCTCTTCGAATAT
CCACCCGCTATTGAACAGCCCTGACCACGTCGGTGTATGCCATTTGTTTT
TTTTTCTGTCGGGTGCCTGCCCCTTGCTCGTCCGCAACGTCGACGAACAG
GTTCTCTGCGCCGGATGTAAGAGGCGAATTGCCGAGGAGCGGGGCTCTAA
TGGTCGATCATCCCGTGTCTCGAGGGATAATCTTCGGGGACAATCAGCAG
GTTCACCGCAGTTGGCGCTTCGCGTTCTCCGCTTGACATTGAAATATATT
TACCTCTTTACTGGTTGTTGTAATCTCATGTATAGCTGTCGCTCGCACTA
CTGCTGGTCGCCGCTGACGTGCGCATTGTTGCCTTCTGCGCCGAGGAGTC
ACACCCTGGTTCACACAGCAGCACAGAAGAATTCCTCTGCCGTGCATCCC
TTCAGATTGTCTCGAACGGGTTCGGCATGCCTCTTTGTCTGGTCGACGTC
CCAAGCCGACGTTTGTATCCCCACGAGCAAGCGCTTAAGAAACAGGTAAC
CGCGATTCGAACCCACGACCTTGACCATCCGTAGGATACCATTTTTGGTC
CATTTGTTCTGTTTTCTAGATCTGGCTCTGTCGCCTGCAAGCTACATTCA
GCTGGCCCGATGTTGTTTCCGCCGCTCGCTGCTTCTGTCGCCAAGAACGT
TTTTTTTTTTTGCTCTTTTGTTCTCAGGCAGTCTCGCACGACAAAGGGGA
AATCATAGCCGAGTACGTCGGGCTCCTCCTCCACAACGCCCGCCGCGCGG
TCTCAGAGCATGTGGGGGCGAAAACAGCTGGAGACGCGGCAAGAGGAGGG
CTGTCGGAACCGGGAGGCGTGAAGGTCGGCGACGTCGAGAGCAGCGGCGG
CAGGACAGCCCTCGCCGGCTCGCTCTCCCCCAAGCGGCCTAGAAAATGCG
TCCTGGTCGACAACACATCCAAGAAGTGCGAGAGGGCGGCGGAGACGTTC
GCGCGGCACGCGGCAGCGGCCGGAGGCGGGCTGGAGCTACACACGCTCCA
CTTTACCGAGGCCGAGAACATGGTGGATTCGCCCGAAGCACTTAGACAGC
TGCGGATAATCCTTGCGCGGCTGAAAGAGCGAGGGCTCATCGGCGTTGAC
CTTATCGCGGAGGACATCTTGGTGACGCCGGTAGGGGGCGTCCGTAGAGG
CGCCGGTGACAAGGTCAAGGCAGCAGCGGCGGCGGCATGTGGACCAGACG
GAAAGGGTGACCGTGGCGGATGATTGCAGCGTGAATGAGAGAACATGATC
GCCTGCATGTCAGGCGTGATATGTTAGGGGTTCGGTTGTGGTTGCGGTGG
ACGTGTCCAAAACGCAATGAGTGCGGTACGGTGCATTGGACAGACGTCTC
GCCCAACTATCTTCGTTTTCTTCACTGTGTCGTGTTTCCATGTTTCTGTT
GTACGATAACTGTTGTACGAGAGCTGTTGACGAGTAGGCAATGGATTGAA
GTGTTGGTGTTGGATGGTTGGTATGCATGTGTTGAAATTGTGTGGTGTTG
TTGATCTGGTGATTGCGGGAGCGCACAAAGTGGATGGAAGCCTGTAGTGT
GAAGAGAACAGAATAACTAGCTTTTGCAATCTGTTGGCCCACGGTAAACG
TAGAAGGGTGGTCATACAGCAGCACCACAGGACAGCAGTCTCCATGAATT
GCGTTTTGGTGACAGCTTATTGTTTCTATCTCTTGTCGAGACTCTGCAGA
TAGCGTGCGCAGCTACATCGGGGCGTATTTTTGAGGCTGCTTCCCGCCGT
ACGTCGTAGGAAGCACCACCCCCGACACAACCCTGCAGCTTGCGTGTGAC
TAGCCCCATACATTTTGTGTGCGTGAATCACCCCGCCCGAAGATTCGAAT
TAAACCGCGGGACGAAACTACGTGTTGGCGATACGCCAGGAGCATGGGCT
TCTTGTAGAGCATCTCGGCACGTTCGTGATGTCAGTCTGTTGGTGCATGT
GGTGTGATGTGTTTTTTGCTTGGCGTACAAGTCCCTCACGCTTGTATCGC
AGTGTACGATACGTTGATGTGGAGAGGTTTGTTTGTCTTTCTGTGCCGTG
TGAATGTATGCCTCTTCTTTTCTTTTTTTCGCGATTTGGGTTTGAATCCC
TCGCGGTCTGTAATATAGCACCTTTCACAACAAATCCTGGGGTTTTGTAA
GATGTGCGGGGGTGTTCTGCGCCGTAGAGACGCATATGCAATCCACGAGA
ATCGGTGGGTGGCGGGGTAGCAGCAGCCCGCAGCTCCAGGTGATGCGTAC
ATACCAGCACTTTTCAGTCATGTGCGCATCGCCAGTGATGCGAGCAGACG
GCTTGATACGGGACTTAATGTCGAACGAAACGCTGCATCGACAATCGCAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig143:7369..12868-

>mRNA_E-siliculosus-1a_F_contig143.2529.1 ID=mRNA_E-siliculosus-1a_F_contig143.2529.1|Name=mRNA_E-siliculosus-1a_F_contig143.2529.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1758bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig143:7369..12868- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGAGGCTGGAGGCAAAGCTGGGGCCCTCAAGCGAAACCCTTCGCGT
CATCCGCCAGGAGATGGAGAGGGACTACTACAACGCAGATCCAAGGCTCG
TTGATCCGCTGTTGGCGAGATGGCGAGGCTGGAGGCAAAGCTGGGGCCCT
CAAGCGAAACCCTTCGCGTCATCCGCCAGGAGATGGAGAGGGACTACTAC
AACGCAGATCCAAGGCTCGTTGATCCGCTGTTGGCGAGAGTTATTCGGGC
GCTCAAGATTCAAGGCCATAGCGTGTTTGGCTTGACTTCCAACGCGTTGG
ATCCTGTTCACGCACCGCGGATCCTGGAGACTCTGGCCAAATACAAGATC
AGAGTTATTCGGGCGCTCAAGATTCAAGGCCATAGCGTGTTTGGCTTGAC
TTCCAACGCGTTGGATCCTGTTCACGCACCGCGGATCCTGGAGACTCTGG
CCAAATACAAGATCAGGTTCTCTGCGCCGGATGTAAGAGGCGAATTGCCG
AGGAGCGGGGCTCTAATGGTCGATCATCCCGTGTCTCGAGGGATAATCTT
CGGGGACAATCAGCAGGTTCTCTGCGCCGGATGTAAGAGGCGAATTGCCG
AGGAGCGGGGCTCTAATGGTCGATCATCCCGTGTCTCGAGGGATAATCTT
CGGGGACAATCAGCAGGCAGTCTCGCACGACAAAGGGGAAATCATAGCCG
AGTACGTCGGGCTCCTCCTCCACAACGCCCGCCGCGCGGTCTCAGAGCAT
GTGGGGGCGAAAACAGCTGGAGACGCGGCAAGAGGAGGGCTGTCGGAACC
GGGAGGCGTGAAGGTCGGCGACGTCGAGAGCAGCGGCGGCAGGACAGCCC
TCGCCGGCTCGCTCTCCCCCAAGCGGCCTAGAAAATGCGTCCTGGTCGAC
AACACATCCAAGAAGTGCGAGAGGGCGGCGGAGACGTTCGCGCGGCACGC
GGCAGCGGCCGGAGGCGGGCTGGAGCTACACACGCTCCACTTTACCGAGG
CCGAGAACATGGTGGATTCGCCCGAAGCACTTAGACAGCTGCGGATAATC
CTTGCGCGGCTGAAAGAGCGAGGGCTCATCGGCGTTGACCTTATCGCGGA
GGACATCTTGGTGACGCCGGTAGGGGGCGTCCGTAGAGGCGCCGGTGACA
AGGTCAAGGCAGCAGCGGCGGCGGCATGTGGACCAGACGGAAAGGGTGAC
CGTGGCGGATGAGCAGTCTCGCACGACAAAGGGGAAATCATAGCCGAGTA
CGTCGGGCTCCTCCTCCACAACGCCCGCCGCGCGGTCTCAGAGCATGTGG
GGGCGAAAACAGCTGGAGACGCGGCAAGAGGAGGGCTGTCGGAACCGGGA
GGCGTGAAGGTCGGCGACGTCGAGAGCAGCGGCGGCAGGACAGCCCTCGC
CGGCTCGCTCTCCCCCAAGCGGCCTAGAAAATGCGTCCTGGTCGACAACA
CATCCAAGAAGTGCGAGAGGGCGGCGGAGACGTTCGCGCGGCACGCGGCA
GCGGCCGGAGGCGGGCTGGAGCTACACACGCTCCACTTTACCGAGGCCGA
GAACATGGTGGATTCGCCCGAAGCACTTAGACAGCTGCGGATAATCCTTG
CGCGGCTGAAAGAGCGAGGGCTCATCGGCGTTGACCTTATCGCGGAGGAC
ATCTTGGTGACGCCGGTAGGGGGCGTCCGTAGAGGCGCCGGTGACAAGGT
CAAGGCAGCAGCGGCGGCGGCATGTGGACCAGACGGAAAGGGTGACCGTG
GCGGATGA
back to top