mRNA_E-siliculosus-1a_F_contig143.2527.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig143.2527.1
Unique NamemRNA_E-siliculosus-1a_F_contig143.2527.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Match: D8LQ98_ECTSI (Cilia- and flagella-associated protein 53 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ98_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 6.200e-40
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 1
Query:    1 QILNSAETMEERKTRILEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKAAREEASA 243
            +ILNSAETMEERKTRIL+KATKLKN REAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKAAREE +A
Sbjct:   96 EILNSAETMEERKTRILDKATKLKNAREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKAAREEENA 176          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Match: A0A835YTH0_9STRA (Cilia- and flagella-associated protein 53 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTH0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.200e-20
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    1 QILNSAETMEERKTRILEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKAAR 228
            ++LN  ET+E+RK RI EKATKL++ REAAR+ +VQ+ YD+QWRD+CD +RTLDSKA  +WV AQR +Q+ EKA R
Sbjct:   97 EVLNRTETLEQRKERIREKATKLRDAREAARKQFVQDMYDKQWRDSCDASRTLDSKAFLDWVNAQREQQLEEKALR 172          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Match: A0A812P941_SYMMI (Cilia- and flagella-associated protein 53 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812P941_SYMMI)

HSP 1 Score: 70.5 bits (171), Expect = 2.600e-12
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 QILNSAETMEERKTRILEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEK 219
            ++L + ET E+RK RI+E+A  L++ RE AR+++V+   DRQWRDACDDARTLDS+A    V+ +R  Q+ EK
Sbjct:   91 EVLANVETQEDRKARIMERAYALRDERERARQDHVKSSLDRQWRDACDDARTLDSEALLSLVSRERKAQIDEK 163          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Match: A0A7S3YAB2_HETAK (Cilia- and flagella-associated protein 53 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAB2_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 1.240e-11
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 QILNSAETMEERKTRILEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKAAR 228
            ++L + E+ E+RK R+ E+A  L+  RE  R+ +VQ+ YDR+WRDACDDAR LDS+A  ++V  +R  Q++EK  R
Sbjct:   93 EVLENVESPEDRKRRMRERALALQAAREEKRQAFVQDAYDRRWRDACDDARALDSQALLDFVAQERLSQLSEKGRR 168          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Match: A0A7S1XRQ7_9STRA (Cilia- and flagella-associated protein 53 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRQ7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.670e-9
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   10 NSAETMEERKTRILEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQR 198
            +  ET E+RK R+  KA  LKN REAA+ ++V+    +QWRD+CD+ARTLDSKA   +VTA R
Sbjct:   95 SETETAEQRKERLRSKAMALKNRREAAQASFVEAKRQQQWRDSCDEARTLDSKALLHYVTAAR 157          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Match: A0A1V9YL46_9STRA (Cilia- and flagella-associated protein 53 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YL46_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.060e-7
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    7 LNSAETMEERKTRILEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKAAREEASAA 246
            L + ET E+RK +++ +AT+LK  REAAR+ YV+E   + +R  CDD RT+DS A    V A+R  Q+A  AAR++  AA
Sbjct:   97 LANVETPEQRKAKMIARATELKAKREAARQAYVEEKRSQLYRQGCDDIRTIDSAAVMAQVVAERETQLAAAAARQKDEAA 176          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Match: A0A482S941_9ARCH (Cilia- and flagella-associated protein 53 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S941_9ARCH)

HSP 1 Score: 55.5 bits (132), Expect = 1.350e-7
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   49 LEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEK 219
            +E+A  L++ RE AR+ YVQ+    QWRDACDDARTLDSKA   ++  +R  Q+ EK
Sbjct:    1 MERAYALRDAREKARQVYVQKRLQDQWRDACDDARTLDSKAALLYMNQERLRQIQEK 57          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Match: A0A7S0GFB1_9STRA (Cilia- and flagella-associated protein 53 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GFB1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.440e-7
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   22 TMEERKTRILEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDS 165
            T EER  +I EKA +LK  RE  R+N+V ECYD+QWRD CD+ R +DS
Sbjct:   68 TPEERMIQIREKAVRLKEAREENRQNFVNECYDKQWRDDCDEIRAMDS 115          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Match: A0A067CRW0_SAPPC (Cilia- and flagella-associated protein 53 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRW0_SAPPC)

HSP 1 Score: 55.1 bits (131), Expect = 6.920e-7
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    7 LNSAETMEERKTRILEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKAAREEASAA 246
            L + ET EERK +++ +AT+LK  REAAR  YV+E   +Q+R+ CDD RT+DS      V A+R  Q+A  A R++  AA
Sbjct:   95 LANVETPEERKAKMIARATELKAKREAARVAYVEEKRLQQYREGCDDIRTVDSATVMAEVVAERERQLAALAERQKEEAA 174          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Match: A0A7S3JZD5_9STRA (Cilia- and flagella-associated protein 53 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZD5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.440e-7
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   10 NSAETMEERKTRILEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKA 222
            NSAE+   RK  ++ KA  L+  REA R+N V++CY RQ+R ACD+ART DSKA  E + A+R  Q+  KA
Sbjct:   88 NSAES---RKEYLMNKARALQEEREAYRKNNVEDCYRRQFRLACDEARTRDSKALQELINAEREIQMQIKA 155          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig143.2527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LQ98_ECTSI6.200e-4093.83Cilia- and flagella-associated protein 53 n=2 Tax=... [more]
A0A835YTH0_9STRA3.200e-2061.84Cilia- and flagella-associated protein 53 n=1 Tax=... [more]
A0A812P941_SYMMI2.600e-1252.05Cilia- and flagella-associated protein 53 n=1 Tax=... [more]
A0A7S3YAB2_HETAK1.240e-1147.37Cilia- and flagella-associated protein 53 n=1 Tax=... [more]
A0A7S1XRQ7_9STRA4.670e-953.97Cilia- and flagella-associated protein 53 n=1 Tax=... [more]
A0A1V9YL46_9STRA1.060e-746.25Cilia- and flagella-associated protein 53 n=1 Tax=... [more]
A0A482S941_9ARCH1.350e-752.63Cilia- and flagella-associated protein 53 n=1 Tax=... [more]
A0A7S0GFB1_9STRA1.440e-758.33Cilia- and flagella-associated protein 53 n=1 Tax=... [more]
A0A067CRW0_SAPPC6.920e-746.25Cilia- and flagella-associated protein 53 n=2 Tax=... [more]
A0A7S3JZD5_9STRA9.440e-750.70Cilia- and flagella-associated protein 53 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig143contigE-siliculosus-1a_F_contig143:670..1301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size228
Model size252
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig143.2527.1prot_E-siliculosus-1a_F_contig143.2527.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig143 694..1301 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927943.5698113-UTR-E-siliculosus-1a_F_contig143:669..6931622927943.5698113-UTR-E-siliculosus-1a_F_contig143:669..693Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig143 670..693 +
1696318747.143163-UTR-E-siliculosus-1a_F_contig143:669..6931696318747.143163-UTR-E-siliculosus-1a_F_contig143:669..693Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig143 670..693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927943.5816066-CDS-E-siliculosus-1a_F_contig143:693..7611622927943.5816066-CDS-E-siliculosus-1a_F_contig143:693..761Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 694..761 +
1696318747.1615746-CDS-E-siliculosus-1a_F_contig143:693..7611696318747.1615746-CDS-E-siliculosus-1a_F_contig143:693..761Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 694..761 +
1622927943.5929492-CDS-E-siliculosus-1a_F_contig143:1141..13011622927943.5929492-CDS-E-siliculosus-1a_F_contig143:1141..1301Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 1142..1301 +
1696318747.175942-CDS-E-siliculosus-1a_F_contig143:1141..13011696318747.175942-CDS-E-siliculosus-1a_F_contig143:1141..1301Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig143 1142..1301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig143.2527.1

>prot_E-siliculosus-1a_F_contig143.2527.1 ID=prot_E-siliculosus-1a_F_contig143.2527.1|Name=mRNA_E-siliculosus-1a_F_contig143.2527.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=76bp
MEERKTRILEKATKLKNVREAARRNYVQECYDRQWRDACDDARTLDSKAN
TEWVTAQRWEQVAEKAAREEASAAC*
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mRNA from alignment at E-siliculosus-1a_F_contig143:670..1301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig143.2527.1 ID=mRNA_E-siliculosus-1a_F_contig143.2527.1|Name=mRNA_E-siliculosus-1a_F_contig143.2527.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=632bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig143:670..1301+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGATTCTCAACAGCGCGGAGACCATGGAGGAGCGAAAGACGCGCATCCT AGAGAAGGCCACCAAACTCAAGAACGTCAGGGAGGCTGCAAGGTATAGGC TGTTTAGGCGTCGAAGCAGTGTTGCCCGCCCCTCAGAAGTCGCTTGGGGA GAATGGTAATGTTGCGATGATTTTTTCGTGAGACAACGTCACTTCGAGCT GCTTCTTGATCGTCGTGCCTCCTGCCCCCCCCCCCCCCCCTCGGGCATCT TCTGCCATTTTTCGCCGTCTGTCTATCTGTCTTTCTGTTCTCTCTCCTCT TGCTGCTCTCTCTATCACTGGTTCTCATTCTCATCAATCTCTCTCTCCCT CTCTCTCCCTCTCTCTCTCGCCACATCTGTCCCGATATCTGTGTTTCTCA TGCCTCTTCTCCCTCTGTCGCTGCTTCCCCCTCTCGTACGATTCCGCGCG GTTGGCCCAATCGCAACAACAGACGTAACTATGTGCAGGAGTGCTACGAC CGCCAGTGGCGCGATGCCTGCGACGACGCCCGCACCCTCGACTCGAAGGC GAACACGGAGTGGGTAACAGCGCAGCGATGGGAGCAGGTGGCGGAGAAGG CTGCCAGAGAGGAGGCAAGTGCTGCTTGCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig143:670..1301+

>mRNA_E-siliculosus-1a_F_contig143.2527.1 ID=mRNA_E-siliculosus-1a_F_contig143.2527.1|Name=mRNA_E-siliculosus-1a_F_contig143.2527.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig143:670..1301+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAGGAGCGAAAGACGCGCATCCTAGAGAAGGCCACCAAACTCAAGAA
CGTCAGGGAGGCTGCAAGATGGAGGAGCGAAAGACGCGCATCCTAGAGAA
GGCCACCAAACTCAAGAACGTCAGGGAGGCTGCAAGACGTAACTATGTGC
AGGAGTGCTACGACCGCCAGTGGCGCGATGCCTGCGACGACGCCCGCACC
CTCGACTCGAAGGCGAACACGGAGTGGGTAACAGCGCAGCGATGGGAGCA
GGTGGCGGAGAAGGCTGCCAGAGAGGAGGCAAGTGCTGCTTGCTAGACGT
AACTATGTGCAGGAGTGCTACGACCGCCAGTGGCGCGATGCCTGCGACGA
CGCCCGCACCCTCGACTCGAAGGCGAACACGGAGTGGGTAACAGCGCAGC
GATGGGAGCAGGTGGCGGAGAAGGCTGCCAGAGAGGAGGCAAGTGCTGCT
TGCTAG
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