mRNA_E-siliculosus-1a_F_contig14284.2521.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: D7FVX8_ECTSI (Ubiquinol cytochrome c reductase cytochrome c1 prec (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX8_ECTSI) HSP 1 Score: 128 bits (321), Expect = 5.050e-35 Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 3
Query: 3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSE EVKKIAAEFEVEDGPNDEGEMFERPAKPSD
Sbjct: 68 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 130
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A6J0BNX1_NEOLC (cytochrome c1, heme protein, mitochondrial-like n=3 Tax=Diprioninae TaxID=410274 RepID=A0A6J0BNX1_NEOLC) HSP 1 Score: 101 bits (251), Expect = 1.950e-24 Identity = 43/63 (68.25%), Postives = 57/63 (90.48%), Query Frame = 3
Query: 3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
RRGW+VY+ VCS+CHS+K+VAFR LIGV+H+E EVK++AAE+E++DGPND+GE + RP KPSD
Sbjct: 92 RRGWEVYKNVCSSCHSLKYVAFRELIGVTHTEAEVKEMAAEYEIKDGPNDQGEYYMRPGKPSD 154
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A8H7UN92_9FUNG (Cytochrome c domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UN92_9FUNG) HSP 1 Score: 99.0 bits (245), Expect = 1.010e-23 Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 3
Query: 3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
RRG+QVYREVCS CHS+ +A+RNLI VSHSEDEVK ++ E E EDGP+DEGEMF+RP KPSD
Sbjct: 69 RRGYQVYREVCSACHSLDRIAWRNLINVSHSEDEVKAMSEEVEYEDGPDDEGEMFQRPGKPSD 131
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A4P9Y437_9FUNG (Cytochrome c1, mitochondrial n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y437_9FUNG) HSP 1 Score: 98.2 bits (243), Expect = 1.340e-23 Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 3
Query: 3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
RRG+QVY+EVC+ CHS+ +AFRNLIGVSH+ DE K A EFE +DGPNDEGEMF+RP KP+D
Sbjct: 46 RRGYQVYKEVCAACHSMDRIAFRNLIGVSHTSDEAKSQAEEFEYQDGPNDEGEMFQRPGKPAD 108
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A1Y1Y5L7_9FUNG (Cytochrome c domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y5L7_9FUNG) HSP 1 Score: 99.0 bits (245), Expect = 1.480e-23 Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 3
Query: 3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
RRG+QVY+EVCSTCHS+ +AFRNL+GVSH+E+E K +A E EV+DGPND GEMFERP K SD
Sbjct: 92 RRGYQVYKEVCSTCHSLDRIAFRNLVGVSHTEEEAKALAEEIEVQDGPNDAGEMFERPGKLSD 154
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A151LZE5_ALLMI (Cytochrome c n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151LZE5_ALLMI) HSP 1 Score: 99.0 bits (245), Expect = 1.630e-23 Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 3
Query: 3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
RRG+QVYR+VCS CHS++++AFR+L+GVSH+EDE K +A+E EV+DGPNDEGEMF RP K SD
Sbjct: 98 RRGYQVYRQVCSACHSLEYLAFRHLVGVSHTEDEAKALASEVEVQDGPNDEGEMFMRPGKLSD 160
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A397H9Z5_9GLOM (Cytochrome c domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397H9Z5_9GLOM) HSP 1 Score: 98.6 bits (244), Expect = 2.420e-23 Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 3
Query: 3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
RRG+QVYREVCSTCHS+ +A+RNLIGVSH+ DEVKK+A EFE +DGP++EGE F+RP +PSD
Sbjct: 97 RRGYQVYREVCSTCHSLDRIAWRNLIGVSHTLDEVKKMAEEFEYKDGPDEEGEYFQRPGRPSD 159
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A176WEB2_MARPO (Cytochrome c domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WEB2_MARPO) HSP 1 Score: 98.6 bits (244), Expect = 2.490e-23 Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 3
Query: 3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
RRG QVY++VC+ CHS+ VA+R+LIGV+++EDEVK +AAE EVEDGPNDEGEMF+RP KPSD
Sbjct: 104 RRGHQVYQQVCAACHSMSLVAYRDLIGVAYTEDEVKCLAAEIEVEDGPNDEGEMFQRPGKPSD 166
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A1C7NIG2_9FUNG (Cytochrome c1, heme protein, mitochondrial n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NIG2_9FUNG) HSP 1 Score: 98.2 bits (243), Expect = 2.780e-23 Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 3
Query: 3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
RRG+QVYREVCS CHS+ +A+RNLIGVSHSEDEVK +A EFE +DGP+D G+MF RP KP+D
Sbjct: 89 RRGYQVYREVCSACHSLDRIAWRNLIGVSHSEDEVKAMAEEFEYQDGPDDNGDMFMRPGKPAD 151
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A2D4CAL0_PYTIN (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAL0_PYTIN) HSP 1 Score: 100 bits (249), Expect = 3.070e-23 Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = 3
Query: 3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
RRG+QVY+EVC+TCHS++ + FRNLIGV+H+E+E+KK+AAE +V DGPNDEGEMFERP K SD
Sbjct: 58 RRGYQVYKEVCATCHSVERICFRNLIGVTHTEEELKKMAAEIDVVDGPNDEGEMFERPGKLSD 120 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14284.2521.1 >prot_E-siliculosus-1a_F_contig14284.2521.1 ID=prot_E-siliculosus-1a_F_contig14284.2521.1|Name=mRNA_E-siliculosus-1a_F_contig14284.2521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=45bp SAEGGRCTGRSARPAIRLSSSPSATSSGFPTRRTRLRRSRRSLR*back to top mRNA from alignment at E-siliculosus-1a_F_contig14284:59..1030- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14284.2521.1 ID=mRNA_E-siliculosus-1a_F_contig14284.2521.1|Name=mRNA_E-siliculosus-1a_F_contig14284.2521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14284:59..1030- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14284:59..1030- >mRNA_E-siliculosus-1a_F_contig14284.2521.1 ID=mRNA_E-siliculosus-1a_F_contig14284.2521.1|Name=mRNA_E-siliculosus-1a_F_contig14284.2521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14284:59..1030- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |