mRNA_E-siliculosus-1a_F_contig14284.2521.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14284.2521.1
Unique NamemRNA_E-siliculosus-1a_F_contig14284.2521.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: D7FVX8_ECTSI (Ubiquinol cytochrome c reductase cytochrome c1 prec (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX8_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.050e-35
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 3
Query:    3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
            RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSE EVKKIAAEFEVEDGPNDEGEMFERPAKPSD
Sbjct:   68 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 130          
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A6J0BNX1_NEOLC (cytochrome c1, heme protein, mitochondrial-like n=3 Tax=Diprioninae TaxID=410274 RepID=A0A6J0BNX1_NEOLC)

HSP 1 Score: 101 bits (251), Expect = 1.950e-24
Identity = 43/63 (68.25%), Postives = 57/63 (90.48%), Query Frame = 3
Query:    3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
            RRGW+VY+ VCS+CHS+K+VAFR LIGV+H+E EVK++AAE+E++DGPND+GE + RP KPSD
Sbjct:   92 RRGWEVYKNVCSSCHSLKYVAFRELIGVTHTEAEVKEMAAEYEIKDGPNDQGEYYMRPGKPSD 154          
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A8H7UN92_9FUNG (Cytochrome c domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UN92_9FUNG)

HSP 1 Score: 99.0 bits (245), Expect = 1.010e-23
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 3
Query:    3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
            RRG+QVYREVCS CHS+  +A+RNLI VSHSEDEVK ++ E E EDGP+DEGEMF+RP KPSD
Sbjct:   69 RRGYQVYREVCSACHSLDRIAWRNLINVSHSEDEVKAMSEEVEYEDGPDDEGEMFQRPGKPSD 131          
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A4P9Y437_9FUNG (Cytochrome c1, mitochondrial n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y437_9FUNG)

HSP 1 Score: 98.2 bits (243), Expect = 1.340e-23
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 3
Query:    3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
            RRG+QVY+EVC+ CHS+  +AFRNLIGVSH+ DE K  A EFE +DGPNDEGEMF+RP KP+D
Sbjct:   46 RRGYQVYKEVCAACHSMDRIAFRNLIGVSHTSDEAKSQAEEFEYQDGPNDEGEMFQRPGKPAD 108          
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A1Y1Y5L7_9FUNG (Cytochrome c domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y5L7_9FUNG)

HSP 1 Score: 99.0 bits (245), Expect = 1.480e-23
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 3
Query:    3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
            RRG+QVY+EVCSTCHS+  +AFRNL+GVSH+E+E K +A E EV+DGPND GEMFERP K SD
Sbjct:   92 RRGYQVYKEVCSTCHSLDRIAFRNLVGVSHTEEEAKALAEEIEVQDGPNDAGEMFERPGKLSD 154          
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A151LZE5_ALLMI (Cytochrome c n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151LZE5_ALLMI)

HSP 1 Score: 99.0 bits (245), Expect = 1.630e-23
Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 3
Query:    3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
            RRG+QVYR+VCS CHS++++AFR+L+GVSH+EDE K +A+E EV+DGPNDEGEMF RP K SD
Sbjct:   98 RRGYQVYRQVCSACHSLEYLAFRHLVGVSHTEDEAKALASEVEVQDGPNDEGEMFMRPGKLSD 160          
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A397H9Z5_9GLOM (Cytochrome c domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397H9Z5_9GLOM)

HSP 1 Score: 98.6 bits (244), Expect = 2.420e-23
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 3
Query:    3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
            RRG+QVYREVCSTCHS+  +A+RNLIGVSH+ DEVKK+A EFE +DGP++EGE F+RP +PSD
Sbjct:   97 RRGYQVYREVCSTCHSLDRIAWRNLIGVSHTLDEVKKMAEEFEYKDGPDEEGEYFQRPGRPSD 159          
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A176WEB2_MARPO (Cytochrome c domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WEB2_MARPO)

HSP 1 Score: 98.6 bits (244), Expect = 2.490e-23
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 3
Query:    3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
            RRG QVY++VC+ CHS+  VA+R+LIGV+++EDEVK +AAE EVEDGPNDEGEMF+RP KPSD
Sbjct:  104 RRGHQVYQQVCAACHSMSLVAYRDLIGVAYTEDEVKCLAAEIEVEDGPNDEGEMFQRPGKPSD 166          
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A1C7NIG2_9FUNG (Cytochrome c1, heme protein, mitochondrial n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NIG2_9FUNG)

HSP 1 Score: 98.2 bits (243), Expect = 2.780e-23
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 3
Query:    3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
            RRG+QVYREVCS CHS+  +A+RNLIGVSHSEDEVK +A EFE +DGP+D G+MF RP KP+D
Sbjct:   89 RRGYQVYREVCSACHSLDRIAWRNLIGVSHSEDEVKAMAEEFEYQDGPDDNGDMFMRPGKPAD 151          
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Match: A0A2D4CAL0_PYTIN (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAL0_PYTIN)

HSP 1 Score: 100 bits (249), Expect = 3.070e-23
Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = 3
Query:    3 RRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEDEVKKIAAEFEVEDGPNDEGEMFERPAKPSD 191
            RRG+QVY+EVC+TCHS++ + FRNLIGV+H+E+E+KK+AAE +V DGPNDEGEMFERP K SD
Sbjct:   58 RRGYQVYKEVCATCHSVERICFRNLIGVTHTEEELKKMAAEIDVVDGPNDEGEMFERPGKLSD 120          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14284.2521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX8_ECTSI5.050e-3598.41Ubiquinol cytochrome c reductase cytochrome c1 pre... [more]
A0A6J0BNX1_NEOLC1.950e-2468.25cytochrome c1, heme protein, mitochondrial-like n=... [more]
A0A8H7UN92_9FUNG1.010e-2373.02Cytochrome c domain-containing protein n=1 Tax=Umb... [more]
A0A4P9Y437_9FUNG1.340e-2369.84Cytochrome c1, mitochondrial n=1 Tax=Piptocephalis... [more]
A0A1Y1Y5L7_9FUNG1.480e-2371.43Cytochrome c domain-containing protein n=1 Tax=Bas... [more]
A0A151LZE5_ALLMI1.630e-2369.84Cytochrome c n=1 Tax=Alligator mississippiensis Ta... [more]
A0A397H9Z5_9GLOM2.420e-2371.43Cytochrome c domain-containing protein n=1 Tax=Div... [more]
A0A176WEB2_MARPO2.490e-2371.43Cytochrome c domain-containing protein n=2 Tax=Mar... [more]
A0A1C7NIG2_9FUNG2.780e-2371.43Cytochrome c1, heme protein, mitochondrial n=1 Tax... [more]
A0A2D4CAL0_PYTIN3.070e-2371.43DNA-directed RNA polymerases I and III subunit RPA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14284contigE-siliculosus-1a_F_contig14284:59..1030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size135
Model size192
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14284.2521.1prot_E-siliculosus-1a_F_contig14284.2521.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14284 115..1030 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927942.4739974-UTR-E-siliculosus-1a_F_contig14284:58..1141622927942.4739974-UTR-E-siliculosus-1a_F_contig14284:58..114Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14284 59..114 -
1696318746.5911558-UTR-E-siliculosus-1a_F_contig14284:58..1141696318746.5911558-UTR-E-siliculosus-1a_F_contig14284:58..114Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14284 59..114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927942.4834566-CDS-E-siliculosus-1a_F_contig14284:114..1451622927942.4834566-CDS-E-siliculosus-1a_F_contig14284:114..145Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14284 115..145 -
1696318746.6054082-CDS-E-siliculosus-1a_F_contig14284:114..1451696318746.6054082-CDS-E-siliculosus-1a_F_contig14284:114..145Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14284 115..145 -
1622927942.4926224-CDS-E-siliculosus-1a_F_contig14284:926..10301622927942.4926224-CDS-E-siliculosus-1a_F_contig14284:926..1030Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14284 927..1030 -
1696318746.6132598-CDS-E-siliculosus-1a_F_contig14284:926..10301696318746.6132598-CDS-E-siliculosus-1a_F_contig14284:926..1030Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14284 927..1030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14284.2521.1

>prot_E-siliculosus-1a_F_contig14284.2521.1 ID=prot_E-siliculosus-1a_F_contig14284.2521.1|Name=mRNA_E-siliculosus-1a_F_contig14284.2521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=45bp
SAEGGRCTGRSARPAIRLSSSPSATSSGFPTRRTRLRRSRRSLR*
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mRNA from alignment at E-siliculosus-1a_F_contig14284:59..1030-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14284.2521.1 ID=mRNA_E-siliculosus-1a_F_contig14284.2521.1|Name=mRNA_E-siliculosus-1a_F_contig14284.2521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14284:59..1030- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCCGCCGAGGGTGGCAGGTGTACCGGGAGGTCTGCTCGACCTGCCATTCG ATTAAGTTCGTCGCCTTCCGCAACCTCATCGGGGTTTCCCACTCGGAGGA CGAGGTGAGGAGGAGGAGGAGGAGGAGGGGTTGCTCGCCTTGTTCTTGGA CTCTGCCGTATATGGCGGCGGCGGGGGGGTACTCTCATGTTTTGCGTGTC TTTTGAGCGGTTAGGCCATTGACCACGCGTCCTCGAGAGGACGGAGCATT GTTCCCACAGAGACCGATATCGCAGGGGGTATGTTGCAGGGGGGGGGGGG TCATGGCTCGGGTCTCTGACGGGAGTGGCGGAGAAGCGCGAGGCGAGTCT TTGGCTTTGTAAAGCAGCGGCACTCGTTTTGGCGCTACACAGTACGCGGC GGGCATCTTGTAGCCGCGTTTTTCTGCTGGAGGAGCGGCTGCACGAACGA AAAAACGCGAACTGAACGAGTGTGGGCCACCTCAAATCAAACGAAGCCGA AAACTCTGCCCGTGTTACATGCGCGGCTGGGAAGCGGTAGTACTAGAGTA AACAAGGAATCGCGATCAGCCCTCGCACAAGCCGGGTATTGATGGATGGT CTTTGCGGGTGGTTCCCTCAACGATGAGCCACCACAAAAAAGTAAAGATG AGAAACACAGCGCAACATATGCATTCATGCGTACATATGTACCTGGCGCT GGTTTTTGACTGTTCGCTGCGAGCCCGCAAGCGGGCGGCAGTTCCCGCGC GTTCCTCATGCAAGCGCTCGATTCAATCAGCATGCAAAACGTACCACGGA TCAACTTCTGTCTCACATCGACTGTTTTTGTTTTTTTCTTCGGTCAACGA AACGGCCGTGTTTGGGACTATGTAATTCGTTGCAGGTTAAGAAGATCGCG GCGGAGTTTGAGGTAGAGGACGGGCCGAACGACGAGGGCGAGATGTTCGA GCGCCCGGCCAAGCCTTCCGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14284:59..1030-

>mRNA_E-siliculosus-1a_F_contig14284.2521.1 ID=mRNA_E-siliculosus-1a_F_contig14284.2521.1|Name=mRNA_E-siliculosus-1a_F_contig14284.2521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14284:59..1030- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCCGCCGAGGGTGGCAGGTGTACCGGGAGGTCTGCTCGACCTGCCATTCG
ATTAAGTTCGTCGCCTTCCGCAACCTCATCGGGGTTTCCCACTCGGAGGA
CGAGTCCGCCGAGGGTGGCAGGTGTACCGGGAGGTCTGCTCGACCTGCCA
TTCGATTAAGTTCGTCGCCTTCCGCAACCTCATCGGGGTTTCCCACTCGG
AGGACGAGGTTAAGAAGATCGCGGCGGAGTTTGAGGTAGGTTAAGAAGAT
CGCGGCGGAGTTTGAGGTAG
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