mRNA_E-siliculosus-1a_F_contig14275.2517.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14275.2517.1
Unique NamemRNA_E-siliculosus-1a_F_contig14275.2517.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14275.2517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14275contigE-siliculosus-1a_F_contig14275:403..879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size336
Model size479
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927941.9888456-CDS-E-siliculosus-1a_F_contig14275:402..7381622927941.9888456-CDS-E-siliculosus-1a_F_contig14275:402..738Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14275 403..738 +
1696318746.4246764-CDS-E-siliculosus-1a_F_contig14275:402..7381696318746.4246764-CDS-E-siliculosus-1a_F_contig14275:402..738Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14275 403..738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927942.0005908-UTR-E-siliculosus-1a_F_contig14275:738..8791622927942.0005908-UTR-E-siliculosus-1a_F_contig14275:738..879Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14275 739..879 +
1696318746.4319575-UTR-E-siliculosus-1a_F_contig14275:738..8791696318746.4319575-UTR-E-siliculosus-1a_F_contig14275:738..879Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14275 739..879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14275.2517.1prot_E-siliculosus-1a_F_contig14275.2517.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14275 403..738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14275.2517.1

>prot_E-siliculosus-1a_F_contig14275.2517.1 ID=prot_E-siliculosus-1a_F_contig14275.2517.1|Name=mRNA_E-siliculosus-1a_F_contig14275.2517.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=112bp
PHTASAHRLAARINLVGFCFIFLLIRTGCGGWPTSPSLIGLSQHSQIFLF
AVVACITRGVPRVFAPSTKHIAVLVAHCFICGFRTQRVGGNRAVVSLAPT
PLMLHLAEKYI*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig14275:403..879+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14275.2517.1 ID=mRNA_E-siliculosus-1a_F_contig14275.2517.1|Name=mRNA_E-siliculosus-1a_F_contig14275.2517.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=477bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14275:403..879+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCACACACAGCATCAGCCCACCGACTTGCGGCAAGGATTAATCTCGTTGG
CTTCTGTTTTATCTTCCTATTGATTAGAACCGGGTGCGGTGGCTGGCCGA
CCAGTCCGTCCCTTATTGGACTGTCACAGCACAGCCAGATATTTCTTTTT
GCTGTTGTAGCGTGCATCACGCGCGGAGTTCCTCGGGTTTTTGCGCCATC
AACCAAGCACATAGCTGTGCTTGTAGCTCATTGTTTCATTTGTGGATTTC
GGACTCAGCGTGTTGGTGGAAACAGGGCCGTTGTTTCTCTTGCCCCTACT
CCTCTGATGCTTCATCTTGCGGAGAAATATATTTAGCCGTGCCTCCTTTG
TCCGTCTTGGCTTATTTTGTGTCGTGACCATGAGGGATGAATGAACGAAT
GAAGGAGGCGGTCTTTGTAATGGCTTTGTTTATTTTCACTCAAGCGTTGC
TGCAAGGACCGAACTGTTCAGCCCCTG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14275:403..879+

>mRNA_E-siliculosus-1a_F_contig14275.2517.1 ID=mRNA_E-siliculosus-1a_F_contig14275.2517.1|Name=mRNA_E-siliculosus-1a_F_contig14275.2517.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14275:403..879+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCACACACAGCATCAGCCCACCGACTTGCGGCAAGGATTAATCTCGTTGG
CTTCTGTTTTATCTTCCTATTGATTAGAACCGGGTGCGGTGGCTGGCCGA
CCAGTCCGTCCCTTATTGGACTGTCACAGCACAGCCAGATATTTCTTTTT
GCTGTTGTAGCGTGCATCACGCGCGGAGTTCCTCGGGTTTTTGCGCCATC
AACCAAGCACATAGCTGTGCTTGTAGCTCATTGTTTCATTTGTGGATTTC
GGACTCAGCGTGTTGGTGGAAACAGGGCCGTTGTTTCTCTTGCCCCTACT
CCTCTGATGCTTCATCTTGCGGAGAAATATATTTAGCCACACACAGCATC
AGCCCACCGACTTGCGGCAAGGATTAATCTCGTTGGCTTCTGTTTTATCT
TCCTATTGATTAGAACCGGGTGCGGTGGCTGGCCGACCAGTCCGTCCCTT
ATTGGACTGTCACAGCACAGCCAGATATTTCTTTTTGCTGTTGTAGCGTG
CATCACGCGCGGAGTTCCTCGGGTTTTTGCGCCATCAACCAAGCACATAG
CTGTGCTTGTAGCTCATTGTTTCATTTGTGGATTTCGGACTCAGCGTGTT
GGTGGAAACAGGGCCGTTGTTTCTCTTGCCCCTACTCCTCTGATGCTTCA
TCTTGCGGAGAAATATATTTAG
back to top