mRNA_E-siliculosus-1a_F_contig1426.2513.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Match: D7FH28_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH28_ECTSI) HSP 1 Score: 900 bits (2325), Expect = 0.000e+0 Identity = 466/539 (86.46%), Postives = 473/539 (87.76%), Query Frame = 2
Query: 62 MARATTTDRRWSGWVSLLVASAAVITGMLLGGTHLLLPDKNSKTSPSILMIFAKEAFDWSSSTTPAPLSATAVAVKAILGGKSDVALAQGLENAVLSAAGPDGSSRAVDVKVGPVRDFVSARVLREVKHACSPLEGGXXXXXXXXXSPCDPNEVDPEFGTTPLHLAELWGSSELVEYLLSIGASPDAFDTVGRQPRNMTFKAFSANSKKAADARLPSLPDSASAAAGEHGMLQDDEMRCEIPEVTIPLFPTADGDDAAEPDDHDQWQSSALAALAEVRRLVSEGEPVMVRNAVPWLQQQEENNQLRFPDAASFAEAWGHRPVDVGGVPYAKNFDLLNERTTLSDYMKSTXXXXXXXXXXDSSGRGNDQDGTSPAPNYVFQVDTEACAEGRDLLGRIVDAALPSSGDRPIVCPPPGGLRGLESVHYYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEEGKGGPPAGGEDRPMECVQRGGDLVYVPGDWGHAAMNLEDGTFGYTLELVNRRDTLASVLGMGCEQ 1678
MARATTTDRRWSGWVSLLVASAAVITG+LLGGTHLLLPDK SKTSPSILMIFAKEAFDWSSSTTPAPLSATAVAVKAILGGKSD ALA GLENAVLSAAGPDGS+RAVDVK VDPEFGTTPLHLAELWGSSELVEYLLSIGASPDAFDTVGRQPRNMTFKAFSANSKKAADARLP+LPDSASAAAG+ GM QDDEMRCEIPEVTIPLFPTADGDDAAE DHDQWQSSALAALAEVRRLVSEGEPVMVRN VPWLQQQE+ QL+FPDAASFAEAWGHRPVDVGGVPYAKNFDLLNERTTLSDYMKST DSSGRGNDQ T PAPNYVFQVDTEACAEGRDLLGR+VDAALPSSGDRPIVCPPPGGLRGLESVHYYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEEGKGGPPA GEDRPMECVQRGGDLVYVPGDWGHAAMNLEDGTFGYTLELVNRRDTLASVLGMGCEQ
Sbjct: 1 MARATTTDRRWSGWVSLLVASAAVITGVLLGGTHLLLPDKKSKTSPSILMIFAKEAFDWSSSTTPAPLSATAVAVKAILGGKSDGALALGLENAVLSAAGPDGSTRAVDVK------------------------------------------VDPEFGTTPLHLAELWGSSELVEYLLSIGASPDAFDTVGRQPRNMTFKAFSANSKKAADARLPALPDSASAAAGDRGMPQDDEMRCEIPEVTIPLFPTADGDDAAELHDHDQWQSSALAALAEVRRLVSEGEPVMVRNVVPWLQQQEKK-QLQFPDAASFAEAWGHRPVDVGGVPYAKNFDLLNERTTLSDYMKSTKTTAAAAA--DSSGRGNDQKATGPAPNYVFQVDTEACAEGRDLLGRVVDAALPSSGDRPIVCPPPGGLRGLESVHYYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEEGKGGPPASGEDRPMECVQRGGDLVYVPGDWGHAAMNLEDGTFGYTLELVNRRDTLASVLGMGCEQ 494
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Match: A0A835YWU2_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWU2_9STRA) HSP 1 Score: 282 bits (722), Expect = 3.020e-80 Identity = 203/551 (36.84%), Postives = 266/551 (48.28%), Query Frame = 2
Query: 86 RRWSGWVSL-LVASAAVITGMLLGGTHLLLPDKNSKTSPSILMIFAKEAFDWSSSTTPAPLSATAVAVKAILGGKSDVALAQGLE-NAVLSAAGPDGSSRAVDVKVGPVRDFVSARVLREVKHACSPLEGGXXXXXXXXXSPCDPNEVDPEFGTTPLHLAELWGSSELVEYLLSIGASPDAFDTVGRQPRNMTFKAFSANSKKAADARLPSLPDSASAAAGEHGMLQDDEMRCEIPEVTIPLFPTADGDDAAEPDDHDQWQSSALAALAEVRRLVSEGEPVMVRNAVPWLQQQEENNQLRFPDAASFAEAWGHRPVDVGGVPYAKNFDLLNERTTLSDYMKSTXXXXXXXXXXDSS-----GRGNDQDGTSPAPNYVFQVDTEACAEGRD--------LLGRIVDAALPSSGDR-----PIVCPPPGGLRGLESVHYYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEE---GKGGP-------------------PAGGE-------DRPMECVQRGGDLVYVPGDWGHAAMN 1591
R+ +G+ +L + S+ VI G+ DKN T IL AK +W STT AP+S +V K +L K +GL + AAG + V + R + ARVL+EV C G CDPNE DP FG TPLH+A L G L EYLL+IGA P+ DTVGR+P NMTF++F+ NSKK A AR C+IPEV+I D A P+ A L EVRRLV EGEPVMVRNA+ WL L +P +A FAEAWG RPVDV GVPYA F++ R+TLS + +D+ A ++ C D L+ V AALP G P++CPP G G++ +HY++G + +GAPFH+HSDA+NL ++G K+WWV+ PR+A +SR HI+++A + G P G + D PMEC+Q GDL YVP DWGHAA+N
Sbjct: 32 RKNAGYYALAFIISSVVIKGIF---------DKNHHTELPILHTIAKHNMNWVDSTTAAPISVPSVLAKLMLA-KEPKDWPEGLTLDEETLAAGTNAKGWRHTVPLSAARRSIEARVLQEVAALC----GSTTRARTEAGPLCDPNERDPVFGMTPLHMARLQGDDALAEYLLTIGADPNVEDTVGRKPSNMTFQSFAVNSKKWALAR---------------------GSECQIPEVSI---------DPANPE----------AGLREVRRLVGEGEPVMVRNAMAWLSAAR-GEPLLYPTSAKFAEAWGERPVDVAGVPYAAKFNVTTARSTLSAFRAEHMGGSDALATSTGDTPLLKAAKSDKKPAKNAEKKRWKFTLATCLPLNDDTQLLCCELMRDYVMAALPVQGGLETPGGPLMCPPTNG--GMDIMHYFMGDKGTGAPFHVHSDAINLMLTGSKKWWVLPPRQATFSRMHIKEWAAKLCTASGDALHALSADLDSTLHLLFARAPLGTQTGRLESRDAPMECLQNAGDLAYVPFDWGHAAIN 525
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Match: A0A2V3JAZ6_9FLOR (JmjC domain-containing protein 8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JAZ6_9FLOR) HSP 1 Score: 241 bits (614), Expect = 5.870e-67 Identity = 151/429 (35.20%), Postives = 209/429 (48.72%), Query Frame = 2
Query: 374 SRAVDVKVGPVRDFVSARVLREVKHACSPLEGGXXXXXXXXXSPCDPNEVDPEFGTTPLHLAELWGSSELVEYLLSIGASPDAF-DTVGRQPRNMTFKAFSANSKKAADARLPSLPDSASAAAGEHGMLQDDEMRCEIPEVTIPLFPTADGDDAAEPDDHDQWQSSALAALAEVRRLVSEGEPVMVRNAVPWLQQQEENNQLRFPDAASFAEAWGHRPVDVGGVPYAKNFDLLNERTTLSDYMKSTXXXXXXXXXXDSSGRGNDQDGTSPAPNYVFQVDTEACAEGRDLLGRIVDAALPSSGDRPIVCPPPGGLRGLESVHYYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEEGKGGPPAGGEDRPMECVQRGGDLVYVPGDWGHAAMNLEDGTFGYTLELVNRRDTLASV 1657
S A + + PVRD+ +A L +++ C+ L PC + D +G TPLHLA + G S L E+L+ GA DA D GR+P N++F F N+K A + P C+ P V ++ A +EVRRLV+EGEP+++R A + NQ R+P + + H V VG VPYA F+L R L DY ++ +S AP+YVF E C L +V P S + P GL+ +H++LG +HSGAPFH+H+DALN AVSG K+W+V TP ++SRR I+ + E P D+P+EC+QR GD+VYVP DWGHA +NLE TFG LE++NRRDTLA +
Sbjct: 81 SSADTIPLQPVRDYTNALRLAKLRRLCATL-------------PCVYDRQDDVYGLTPLHLAAISGDSALSEWLVKHGA--DAVEDFAGRKPSNLSFANFIRNAKSVAQKQHP---------------------ECDFPTV--------------------HFEHDVEHAKSEVRRLVNEGEPILMRAAYDYY------NQHRYPPVSQLVREYAHVNVTVGSVPYANAFNLSTTRMKLEDYYRTIYQE------------------SSTAPSYVFNKHPEICQTAYQALSALVADTFPLS-----LISHPDNTGGLDGIHFFLGNKHSGAPFHVHADALNAAVSGSKQWYVYTPARTIYSRRPIKTWVENDL--PALEEHDKPLECLQRAGDVVYVPLDWGHAVLNLEHDTFGVALEVLNRRDTLAHL 422
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Match: A0A2P6NVY1_9EUKA (JmjC domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NVY1_9EUKA) HSP 1 Score: 226 bits (576), Expect = 2.190e-61 Identity = 137/381 (35.96%), Postives = 198/381 (51.97%), Query Frame = 2
Query: 515 NEVDPEFGTTPLHLAELWGSSELVEYLLSIGASPDAFDTVGRQPRNMTFKAFSANSKKAADARLPSLPDSASAAAGEHGMLQDDEMRCEIPEVTIPLFPTADGDDAAEPDDHDQWQSSALAALAEVRRLVSEGEPVMVRNAVPWLQQQEENNQLRFPDAASFAEAWGHRPVDVGGVPYAKNFDLLNERTTLSDYMKSTXXXXXXXXXXDSSGRGNDQDGTSPAPNYVFQVDTEACAEGRDLLGRIVDAALPSSGDRPIVCPPPGGLRGLESVHYYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEEGKGGPPAGGEDRPMECVQRGGDLVYVPGDWGHAAMNLEDGTFGYTLELVNRRDTLASV 1657
++ DPEFG T LHLA G +E +++L S+GA D D+VGR P N++F F NSKK A AG C+IP V + + A +E++RLV EGEPV+++NA+ +L E ++ D E +G V VG VPYA F L ++ +TL DY + S P Y+FQ ++ G LG +V A P+ ++CP G G +S+H+YLG ++SGAPFHIH+DA NL V G KRW + P +A++S++H+ + +E ED+P+EC+Q GD++YVP DW HA +N EDGT+GY LEL+NRR+ + S+
Sbjct: 134 DQQDPEFGLTALHLAHQSGDAEAIKFLESLGAKLDVQDSVGRLPSNLSFTNFIKNSKKWARQ------------AGR---------TCDIPVVDV----------------------KSEADFSEIKRLVGEGEPVLMKNAMKFLVNANELAAIQIQD---LVEKYGSSHVTVGEVPYANVFRLPHDISTLRDYYV------------------HHVQNKSEHPLYIFQKHSQMTEAGLTALGDLVSRAFPTPS---LICPVEYGSTGSDSIHFYLGAKNSGAPFHIHADAANLVVRGSKRWLMYPPLQALYSQKHVYRWLQEDY--KDMREEDKPLECIQGPGDVIYVPFDWSHAVLNEEDGTYGYALELLNRREVMWSL 445
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Match: A0A0H5R404_9EUKA (JmjC domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R404_9EUKA) HSP 1 Score: 214 bits (546), Expect = 9.480e-58 Identity = 160/511 (31.31%), Postives = 239/511 (46.77%), Query Frame = 2
Query: 113 LVASAAVITGMLLGGTHLLLPDKNSKTSPSILMIFAKEAFDWSSSTTPAPLSATAVAVKAILGGKSDVALAQGLENAVLSAAGPDGSSRAVDVKVGPVRDFVSARVLREVKHACSPLEGGXXXXXXXXXSPCDPNEVDPEFGTTPLHLAELWGSSELVEYLLSIGASPDAFDTVGRQPRNMTFKAFSANSKKAADARLPSLPDSASAAAGEHGMLQDDEMRCEIPEVTIPLFPTADGDDAAEPDDHDQWQSSALAALAEVRRLVSEGEPVMVRNAVPWLQQQEENNQLRFPDAASFAEAWGHRPVDVGGVPYAKNFDLLNERTTLSDYMKSTXXXXXXXXXXDSSGRGNDQDGTSPAPNYVFQVDTEACAEGRDLLGRIVDAALPSSGDRPIVCPPPGGLRGLESVHYYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEEGKGGPPAGGEDRPMECVQRGGDLVYVPGDWGHAAMNLEDGTFGYTLELVNRRDT 1645
++A A +I +L+G ++ NS ++ ++A +WS STT P+S ++V K IL + GL + + ++ V+V +R +++ ++++ C P G CD DP + TP+H+A L G ++YLLS+GA+PDA D R+P N+TF +F N+++ A R + C++PEV I D P L A AE+RRLV EGEPV +R + ++ + + L + F + +G+ V VG VPY+ F L + + L +Y+ N D T YVF D E A+ L R V P P V G ES+H+YLG + SGAP+H HSDA+NL G+KRW + P ++ +SR I DY E + G+ + C Q GD YVP DWGHA +NLED TFG+ LEL+N RD+
Sbjct: 6 IIAFAILICAVLVGFRTSMVRPMNSI---EVMRVWADH--NWSMSTTSLPISRSSVLAKNILSKNFN-----GLPSYL--------HVQSDTVQVSLIRRYINQDRYKKLRKLC-PSAGS-----------CDVITPDPVYKLTPMHMASLSGDQNSIDYLLSLGANPDAIDASARKPANLTFSSFIENTRRFAKQRGSA---------------------CQLPEVII---------DPENP----------LIAFAEIRRLVDEGEPVAIRGLLQYMNE----SALLDWNLDIFLKQFGNVQVKVGSVPYSSYFGLESAKMALHEYVS------------------NATDNT-----YVFNKDPEISADAMSFLDRFVTETFPKYFTAPRVL-------GDESIHFYLGQKGSGAPYHQHSDAVNLLTHGKKRWMITPPNDSAYSRVPIHDYVE-------SSGQIPALTCEQYAGDAFYVPFDWGHAVLNLEDYTFGFALELLNDRDS 405
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Match: A0A0G4J4W2_PLABS (JmjC domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J4W2_PLABS) HSP 1 Score: 165 bits (418), Expect = 2.200e-40 Identity = 105/291 (36.08%), Postives = 145/291 (49.83%), Query Frame = 2
Query: 776 CEIPEVTIPLFPTADGDDAAEPDDHDQWQSSALAALAEVRRLVSEGEPVMVRNAVPWLQQQEENNQLRFPDAASFAEAWGHRPVDVGGVPYAKNFDLLNERTTLSDYMKSTXXXXXXXXXXDSSGRGNDQDGTSPAPNYVFQVDTEACAEGRDLLGRIVDAALPSSGDRPIVCPPPGGLRGLESVHYYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEEGKGGPPAGGEDRPMECVQRGGDLVYVPGDWGHAAMNLEDGTFGYTLELVNRRDTL 1648
C++PEV + AD D + W AE+RRL EGEPV +R L E ++ L + D +F GH PV+VG VPYA+ F L + LS Y+ S + +YVF D C + +L R ALP P P G ++VH+YLG + SGAPFH+HSDA+NL G K W+V P ++V+SR I ++A G G + + C Q GD +Y+P DWGHA +N ED TFG+ +EL+N+RD+L
Sbjct: 184 CQLPEVNLAGLGRADLDRS--------W--------AEIRRLAHEGEPVAIRGL---LGAYERSDVLDW-DLDTFLTRHGHVPVNVGDVPYAQYFGLPIQSMPLSTYVASLAPG---------------------SASYVFAKDDGICRDALQILDRFARDALP-----PYFVSP--AALGSDAVHFYLGNKGSGAPFHLHSDAVNLLAHGSKTWFVTPPPQSVYSRTPIGEFAANGTSGIES------LRCEQNPGDAIYIPFDWGHAVLNNEDSTFGFAVELLNKRDSL 420
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Match: A0A7S0G3X7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3X7_9RHOD) HSP 1 Score: 116 bits (290), Expect = 9.590e-27 Identity = 52/111 (46.85%), Postives = 77/111 (69.37%), Query Frame = 2
Query: 1316 GLESVHYYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEEGKGGPPAGGEDRPMECVQRGGDLVYVPGDWGHAAMNLEDGTFGYTLELVNRRDTL 1648
G ++H+ LG SGAP HIHSDALNL + G+KRW+V+ P++A++SR+HI + +E P A + +P+ECVQ GD +YVP DW H +N + TF + LEL++ R++L
Sbjct: 16 GPSALHFALGREGSGAPMHIHSDALNLVLGGKKRWFVLPPQDAIYSRKHISTWVKEDL--PTA--DPKPLECVQNSGDAIYVPFDWAHGVINSGEFTFAFALELLSDRESL 122
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Match: A0A7S0G4W2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G4W2_9RHOD) HSP 1 Score: 104 bits (259), Expect = 5.350e-21 Identity = 97/344 (28.20%), Postives = 135/344 (39.24%), Query Frame = 2
Query: 236 WSSSTTPAPLSATAVAVKAILGGKSDVALAQGLENAVLSAAGPDGSSRAVDVKVGPVRDFVSARVLREVKHACSPLEGGXXXXXXXXXSPCDPNEVDPEFGTTPLHLAELWGSSELVEYLLSIGASPDAFDTVGRQPRNMTFKAFSANSKKAADARLPSLPDSASAAAGEHGMLQDDEMRCEIPEVTIPLFPTADGDDAAEPDDHDQWQSSALAALAEVRRLVSEGEPVMVRNAVPWLQQQEENNQLRFPDAASFAEAWGHRPVDVGGVPYAKNFDLLNERTTLSDYMKSTXXXXXXXXXXDSSGRGNDQDGTSPAPNYVFQVDTEACAEGRDLLGRIVDAALP 1267
W STTP P+S A K+IL G+ L + DG V + D++ + L E+K CS E N D FG TPLHL+ +L EYL+ +GA A D GR+P NM+F +F N++K+A R + CEIPEV DD +W E +RL+ EGEPV++R AV + P +G+ V VG VPYA F L E LS+++ + RG+D P YVF D + E +++ +V A P
Sbjct: 5 WEDSTTPIPISYAAKLTKSILAGEVG-----NLPEKLAKDISKDGYQT---VHIKTAWDYIRSERLEEIKRMCSADEEKCKAYV---------NYADKRFGLTPLHLSYFNRDEKLSEYLVGLGADASAMDVAGRKPLNMSFPSFVNNARKSAKQRGSA---------------------CEIPEVFA--------------DDTGEWTK-------EAKRLIREGEPVIIRGAV----------KHEGPTLEELVRKFGNTTVRVGSVPYADYFGLNIEHIKLSEFVARSV-------------RGDDD---GQLPMYVFAKDAKINEEFFEIMANLVRKAFP 263
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Match: A0A812KZU7_9DINO (JMJD8 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KZU7_9DINO) HSP 1 Score: 98.2 bits (243), Expect = 1.460e-17 Identity = 74/215 (34.42%), Postives = 103/215 (47.91%), Query Frame = 2
Query: 1001 AEAWGHRPVDVGGVPYAKNFDLLNER---TTLSDYMKSTXXXXXXXXXXDSSGRGNDQDGTSPAPNYVFQVDTEACAEGRDLLGRIVDAALPSS-GDRPIVCPPPGGLRGLES-------VHYYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEEGKGGPPAGGEDRPMECV--QRGGDLVYVPGDWGHAAMNLEDGT 1606
A+A G V +PY +F L + TTL D++++T Q + P + VD E + L R+++A L + G R V P G ++ +S + + +GG SG+P H H DALNL + GRKRWW+V P EA +SR H D + G A + CV Q GD+VYVP WGHA +NLED T
Sbjct: 289 ADAAGEARAMVSEIPYGADFGLDPSQETPTTLRDFLQATPQPPAKRQRCREQ-----QADRAYRPYFFVAVDKEL----QPQLARLLEAKLGVAVGGR--VSWPFGEVQPAQSLPFTATTIQFAVGGEGSGSPMHFHQDALNLCLRGRKRWWLVPPSEAAFSRLHPLDALDMGTSANSAR-DCLEGACVFEQEEGDVVYVPDMWGHAVLNLEDHT 491
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Match: A0A7S3FJ58_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FJ58_9EUKA) HSP 1 Score: 88.6 bits (218), Expect = 4.100e-17 Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 2
Query: 1334 YYLGGRHSGAPFHIHSDALNLAVSGRKRWWVVTPREAVWSRRHIRDYAEEGKGGPPAGGEDRPMECVQRGGDLVYVPGDWGHAAMNLE 1597
+YLG SGAP HIH+DA N + GRKRW++ P +A WS + ++ + G A + P+ECVQ+ GD++YVP WGH+ +N+E
Sbjct: 4 FYLGPPGSGAPMHIHNDAANYLIYGRKRWFLSPPGDAEWSVQPASEFRDSLAG--LASDQHAPIECVQQAGDMLYVPKGWGHSTINIE 89 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1426.2513.1 >prot_E-siliculosus-1a_F_contig1426.2513.1 ID=prot_E-siliculosus-1a_F_contig1426.2513.1|Name=mRNA_E-siliculosus-1a_F_contig1426.2513.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=540bp MARATTTDRRWSGWVSLLVASAAVITGMLLGGTHLLLPDKNSKTSPSILMback to top mRNA from alignment at E-siliculosus-1a_F_contig1426:25982..29538- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1426.2513.1 ID=mRNA_E-siliculosus-1a_F_contig1426.2513.1|Name=mRNA_E-siliculosus-1a_F_contig1426.2513.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3557bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1426:25982..29538- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1426:25982..29538- >mRNA_E-siliculosus-1a_F_contig1426.2513.1 ID=mRNA_E-siliculosus-1a_F_contig1426.2513.1|Name=mRNA_E-siliculosus-1a_F_contig1426.2513.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3240bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1426:25982..29538- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |