mRNA_E-siliculosus-1a_F_contig1426.2512.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1426.2512.1
Unique NamemRNA_E-siliculosus-1a_F_contig1426.2512.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Match: A0A8J5XPH7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPH7_DIALT)

HSP 1 Score: 79.0 bits (193), Expect = 1.410e-17
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAVARGRRVVRDAEEFSKFSRYRAMRRRYSDP 237
            MHPLVRDL KRF+L  + +P G A  + KA+EAL+  A L  E +I+RAVARGR +VR+ +   K  +YR M++RYS P
Sbjct:    1 MHPLVRDLYKRFLLVGKDYPGGLALVRRKAKEALRNQAHLQDELEIKRAVARGRWMVRELQGIIKLKKYREMKKRYSSP 79          
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Match: A0A7S1UA59_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UA59_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.630e-15
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAVARGRRVVRDAEEFSKFSRYRAMRRRYSD 234
            MHPLVRDL KRF+L  R +P+G A  + +A+ A+  NA L+ E +I+RAVA+GR +VR+     +  +YRAMR+RY +
Sbjct:   28 MHPLVRDLYKRFLLVGREYPTGLADVRARAKAAILANAHLTEEVEIKRAVAKGRYMVREMYAVMQLKKYRAMRKRYEE 105          
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Match: L1J1M7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J1M7_GUITC)

HSP 1 Score: 65.9 bits (159), Expect = 2.170e-12
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAVARGRRVVRDAE-EFSKFSRYRAMRRRYS 231
            MHPLVRDL KRF+L  R +P G    K K +EA   N  L  + +IRRAVARGR  +R+      +F +YR M+ RYS
Sbjct:    1 MHPLVRDLYKRFILVGRDYPGGLQIIKKKVKEAFFTNRHLEDDIEIRRAVARGRWYIRNELCAIIQFKKYRVMKERYS 78          
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Match: A0A7S2V0J7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0J7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.160e-12
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAVARGRRVVRDAEEFSKFSRYRAMRRRYSDPAS 243
            MH LVRDL KRFVLA   +       ++K +E+  RNA LSSEEDI+RAV  GR +V++     +  +YR M+ RY +  S
Sbjct:    7 MHALVRDLYKRFVLAGSYYHEPWVLTREKVKESFFRNANLSSEEDIKRAVHYGRYMVKEMVALEQLKKYRTMKHRYGEKQS 87          
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Match: A0A5A8CP96_CAFRO (Complex1_LYR_dom domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CP96_CAFRO)

HSP 1 Score: 64.3 bits (155), Expect = 7.960e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAVARGRRVVRDAEEFSKFSRYRAMRRRY 228
            MHPLVRDL KRF++A R +P G    + +A+ A Q NA L+ E  I+RAVA+GR  VR+        +YR++++RY
Sbjct:    1 MHPLVRDLYKRFLVAGRDYPQGLDVVRRRAKLAFQENAHLTDEVAIKRAVAKGRYWVREIHATHALHKYRSIKKRY 76          
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Match: A0A485K3V6_9STRA (Aste57867_786 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K3V6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.150e-11
Identity = 33/77 (42.86%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAVARGRRVVRDAEEFSKFSRYRAMRRRYS 231
            MHPLVRD  KR +L  R +P G  + ++KA+EA  + A L+++E+I+RAV RGR + ++     +  +YRAM +RY+
Sbjct:    2 MHPLVRDAYKRLLLVGRDYPLGLDYVREKAKEAFLKQAHLTNDEEIKRAVHRGRWMAKEMIGVIQLKKYRAMNQRYT 78          
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Match: A0A6G0WG47_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WG47_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.670e-11
Identity = 32/77 (41.56%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAVARGRRVVRDAEEFSKFSRYRAMRRRYS 231
            MHPLVRD+ KR ++  R +P G  + ++KA+EA  + A L+++E+I+RAV RGR +V++     +  +YR M  RY+
Sbjct:    1 MHPLVRDVYKRILVVGRDYPMGLDYVREKAKEAFYKEAHLTADEEIKRAVHRGRWMVKEMIGVIQLKKYRTMNARYT 77          
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Match: A0A7S2C6K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C6K2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.020e-11
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAVARGRRVVRDAEEFSKFSRYRAMRRRYSD 234
            MHPLVRDL KRF+   R +P    + +DKAREA+ +N  L+   +I  AV RGR +V++     +  +YRA+++RY D
Sbjct:   50 MHPLVRDLFKRFIYVGRDYPLPPPYVRDKAREAILKNKDLTDAREIIEAVKRGRWMVKEIIGVIQLKKYRALKKRYYD 127          
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Match: A0A067CLU1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CLU1_SAPPC)

HSP 1 Score: 59.3 bits (142), Expect = 1.560e-9
Identity = 30/77 (38.96%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAVARGRRVVRDAEEFSKFSRYRAMRRRYS 231
            M P VRDL KRF++  + +P G  + + K +EA  + A L+ E +I++AV+RGR +V++     +  +YRAM +RY+
Sbjct:    1 MQPRVRDLYKRFLVVGKDYPLGLEYVRPKVKEAFFKKAALADEAEIKKAVSRGRWMVKEMIGVIQLKKYRAMNQRYT 77          
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Match: A0A024TFL8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TFL8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.600e-9
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAVARGRRVVRDAEEFSKFSRYRAMRRRYS 231
            MHPLVRD+ KR +   R +P G  + ++KA+    + A L++EEDI+RAV  GR  V++     +  +YRAM +RY+
Sbjct:    1 MHPLVRDVYKRVLAVGRDYPLGLDYVREKAKATFFKQAHLTAEEDIKRAVHVGRWKVKEMVGVIQLKKYRAMNQRYT 77          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1426.2512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A8J5XPH7_DIALT1.410e-1751.90Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S1UA59_9STRA2.630e-1548.72Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
L1J1M7_GUITC2.170e-1248.72Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2V0J7_9STRA4.160e-1245.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5A8CP96_CAFRO7.960e-1246.05Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A485K3V6_9STRA1.150e-1142.86Aste57867_786 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A6G0WG47_9STRA1.670e-1141.56Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2C6K2_9STRA2.020e-1143.59Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A067CLU1_SAPPC1.560e-938.96Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024TFL8_9STRA1.600e-941.56Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1426contigE-siliculosus-1a_F_contig1426:25177..25428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size252
Model size252
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927941.4887104-CDS-E-siliculosus-1a_F_contig1426:25176..254281622927941.4887104-CDS-E-siliculosus-1a_F_contig1426:25176..25428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1426 25177..25428 +
1696318746.288157-CDS-E-siliculosus-1a_F_contig1426:25176..254281696318746.288157-CDS-E-siliculosus-1a_F_contig1426:25176..25428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1426 25177..25428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1426.2512.1prot_E-siliculosus-1a_F_contig1426.2512.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1426 25177..25428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1426.2512.1

>prot_E-siliculosus-1a_F_contig1426.2512.1 ID=prot_E-siliculosus-1a_F_contig1426.2512.1|Name=mRNA_E-siliculosus-1a_F_contig1426.2512.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=84bp
MHPLVRDLCKRFVLASRRHPSGEAWFKDKAREALQRNALLSSEEDIRRAV
ARGRRVVRDAEEFSKFSRYRAMRRRYSDPASKK*
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mRNA from alignment at E-siliculosus-1a_F_contig1426:25177..25428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1426.2512.1 ID=mRNA_E-siliculosus-1a_F_contig1426.2512.1|Name=mRNA_E-siliculosus-1a_F_contig1426.2512.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=252bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1426:25177..25428+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACCCGTTGGTGAGGGATCTCTGCAAGAGGTTCGTGCTAGCCTCCCG CCGTCACCCGTCCGGCGAGGCCTGGTTCAAAGACAAAGCCAGGGAAGCTT TGCAAAGGAACGCCCTGCTCTCTTCCGAGGAAGACATCAGAAGGGCCGTG GCTCGAGGGCGCCGGGTTGTAAGGGACGCAGAGGAGTTCTCCAAGTTTTC TCGGTACAGGGCTATGCGGAGGAGATACTCCGACCCGGCGAGCAAGAAGT AG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1426:25177..25428+

>mRNA_E-siliculosus-1a_F_contig1426.2512.1 ID=mRNA_E-siliculosus-1a_F_contig1426.2512.1|Name=mRNA_E-siliculosus-1a_F_contig1426.2512.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1426:25177..25428+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACCCGTTGGTGAGGGATCTCTGCAAGAGGTTCGTGCTAGCCTCCCG
CCGTCACCCGTCCGGCGAGGCCTGGTTCAAAGACAAAGCCAGGGAAGCTT
TGCAAAGGAACGCCCTGCTCTCTTCCGAGGAAGACATCAGAAGGGCCGTG
GCTCGAGGGCGCCGGGTTGTAAGGGACGCAGAGGAGTTCTCCAAGTTTTC
TCGGTACAGGGCTATGCGGAGGAGATACTCCGACCCGGCGAGCAAGAAGT
AGATGCACCCGTTGGTGAGGGATCTCTGCAAGAGGTTCGTGCTAGCCTCC
CGCCGTCACCCGTCCGGCGAGGCCTGGTTCAAAGACAAAGCCAGGGAAGC
TTTGCAAAGGAACGCCCTGCTCTCTTCCGAGGAAGACATCAGAAGGGCCG
TGGCTCGAGGGCGCCGGGTTGTAAGGGACGCAGAGGAGTTCTCCAAGTTT
TCTCGGTACAGGGCTATGCGGAGGAGATACTCCGACCCGGCGAGCAAGAA
GTAG
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