mRNA_E-siliculosus-1a_F_contig1424.2503.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI) HSP 1 Score: 277 bits (709), Expect = 6.990e-94 Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 1
Query: 55 SALVEARKRTTVKKWANAYDDRTSEYGGCDPDGCKASLTRDQSWNDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR 483
+ALV+ARKRTTV KWANAYDDRTSEYGGCDPDGCKASLTRDQSW DESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGS GF+KTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR
Sbjct: 2 TALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR 144
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE) HSP 1 Score: 224 bits (572), Expect = 5.010e-65 Identity = 115/143 (80.42%), Postives = 119/143 (83.22%), Query Frame = 1
Query: 58 ALVEARKRTTVKKWANAYDDRTSEYGGCDPDGCKASLTRDQSWNDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
ALV+ARKRT VKKWANAYDDRTSEYGGCDPDGCKAS TRD+SW DESRWSCSEKLEDAQC ITY FEEPQDIVRIKI +G FKK ITSSGTSS YETWDINTDETKWLSMEALNLDDDEWISITEVR+
Sbjct: 607 ALVDARKRTAVKKWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDESRWSCSEKLEDAQCNITYNFEEPQDIVRIKI----------------NGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEVRI 733
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 8.520e-20 Identity = 64/147 (43.54%), Postives = 84/147 (57.14%), Query Frame = 1
Query: 55 SALVEARKRTTVKKWANAYDDRTSEYGGCDPDGCKASLTRDQSWND-ESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
+A+VEA TV A+ YD S GCDP GC A LTRD ESRWSC L DA +C+ITY + + I YKGDER RTL + T TSSGT++ YET +++T +W+S+ + L+D EW+SI EV +
Sbjct: 23 AAIVEASTLATVTAVADLYDPSLSAENGCDPSGCVAELTRDGDVTSLESRWSCQPALGDAGSECRITYGLGIQYQLSAVNIAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIELDT-MAQWISVVGV-LEDSEWLSIMEVEI 167
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 3.410e-18 Identity = 62/147 (42.18%), Postives = 85/147 (57.82%), Query Frame = 1
Query: 55 SALVEARKRTTVKKWANAYDDRTSEYGGCDPDGCKASLTRD-QSWNDESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
+A VEA V A YD R S GCDP GC A LTRD + + ESRW+C L DA +C+ITY + + I YKGDER RTL++ T TSSGT++ +ET +++T +W+S+ + L D EW+SI EV++
Sbjct: 5 AASVEASTLANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDT-MGRWISIVGV-LADSEWLSIMEVKI 149
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 5.190e-17 Identity = 58/152 (38.16%), Postives = 83/152 (54.61%), Query Frame = 1
Query: 64 VEARKRTTVKKWANAYDDRTSEYGGCDPDGCKASLTRDQSWNDESRWSCSEKLEDA-------QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDIN----TDETKWLSMEALNLDDDEWISITEVRM 486
VEA + TTV NA+D RT + GC PDGC TRD D SRWSCS L +A +C++ ++ E Q + + + F KGD R RTL + +G + +TS GT+S ET++++ L ME+ L DE++SI EV +
Sbjct: 248 VEAGEVTTVTVTTNAFDARTDD-DGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEI 398
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.450e-14 Identity = 59/148 (39.86%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 55 SALVEARKRTTVKKWANAYDDR-TSEYGGCDPDGCKASLTRD-QSWNDESRWSCSEKLEDAQ--CKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
+A+VEA TV A YD T+ GGC P GC TRD + + ESRWSC L DA C+ITY + + I YKGDER RTL++ TSSGT++ +ET +++T +W+ + + L+D EW+SI EV +
Sbjct: 23 AAVVEASTLATVTVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEINIDNLPYTVWTSSGTTTDFETIEVDT-MGRWIDIVGV-LEDSEWLSIMEVEI 168
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 3.420e-12 Identity = 55/148 (37.16%), Postives = 79/148 (53.38%), Query Frame = 1
Query: 64 VEARKRTTVKKWANAYDDRTSEYGG------CDPDGCKASLTRDQSWND-ESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEV 480
VE +T V A AYD R G +GC + TRD N+ ESRWSC+ K+ C+I Y F EPQDI IK+ F+ GDERVRTL++ G +T S S + + ++ + +E+++L ++EWIS+ EV
Sbjct: 479 VEVGTKTDVSVSATAYDTRPGSSSGDVGCGEAGGNGCSPANTRDGISNETESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVYFDGTLHRTHESYA-GSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: UPI0014728A14 (hypothetical protein n=1 Tax=Neobacillus soli TaxID=220688 RepID=UPI0014728A14) HSP 1 Score: 55.5 bits (132), Expect = 2.560e-7 Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 262 PQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALN--LDDDEWISITEVRM 486
PQDI +I I F+ G R RTL + + + TITSSG + +ET+D+ TDETK L + + + D W+SITEV +
Sbjct: 1 PQDIEKIAIAFHLGTSRTRTLDVFNNHYYHSTITSSGKTDGFETFDLYTDETKELKLCVFDPKWNTDVWLSITEVEI 77 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1424.2503.1 >prot_E-siliculosus-1a_F_contig1424.2503.1 ID=prot_E-siliculosus-1a_F_contig1424.2503.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=164bp MHSFGIFALAFAAVLGTSSALVEARKRTTVKKWANAYDDRTSEYGGCDPDback to top mRNA from alignment at E-siliculosus-1a_F_contig1424:25866..26822+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1424.2503.1 ID=mRNA_E-siliculosus-1a_F_contig1424.2503.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=957bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1424:25866..26822+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1424:25866..26822+ >mRNA_E-siliculosus-1a_F_contig1424.2503.1 ID=mRNA_E-siliculosus-1a_F_contig1424.2503.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1424:25866..26822+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |