mRNA_E-siliculosus-1a_F_contig1424.2503.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1424.2503.1
Unique NamemRNA_E-siliculosus-1a_F_contig1424.2503.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 6.990e-94
Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 1
Query:   55 SALVEARKRTTVKKWANAYDDRTSEYGGCDPDGCKASLTRDQSWNDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR 483
            +ALV+ARKRTTV KWANAYDDRTSEYGGCDPDGCKASLTRDQSW DESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGS GF+KTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR
Sbjct:    2 TALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVR 144          
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 5.010e-65
Identity = 115/143 (80.42%), Postives = 119/143 (83.22%), Query Frame = 1
Query:   58 ALVEARKRTTVKKWANAYDDRTSEYGGCDPDGCKASLTRDQSWNDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
            ALV+ARKRT VKKWANAYDDRTSEYGGCDPDGCKAS TRD+SW DESRWSCSEKLEDAQC ITY FEEPQDIVRIKI                +G FKK ITSSGTSS YETWDINTDETKWLSMEALNLDDDEWISITEVR+
Sbjct:  607 ALVDARKRTAVKKWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDESRWSCSEKLEDAQCNITYNFEEPQDIVRIKI----------------NGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEVRI 733          
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 8.520e-20
Identity = 64/147 (43.54%), Postives = 84/147 (57.14%), Query Frame = 1
Query:   55 SALVEARKRTTVKKWANAYDDRTSEYGGCDPDGCKASLTRDQSWND-ESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
            +A+VEA    TV   A+ YD   S   GCDP GC A LTRD      ESRWSC   L DA  +C+ITY       +  + I  YKGDER RTL +        T TSSGT++ YET +++T   +W+S+  + L+D EW+SI EV +
Sbjct:   23 AAIVEASTLATVTAVADLYDPSLSAENGCDPSGCVAELTRDGDVTSLESRWSCQPALGDAGSECRITYGLGIQYQLSAVNIAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIELDT-MAQWISVVGV-LEDSEWLSIMEVEI 167          
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.410e-18
Identity = 62/147 (42.18%), Postives = 85/147 (57.82%), Query Frame = 1
Query:   55 SALVEARKRTTVKKWANAYDDRTSEYGGCDPDGCKASLTRD-QSWNDESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
            +A VEA     V   A  YD R S   GCDP GC A LTRD  + + ESRW+C   L DA  +C+ITY       +  + I  YKGDER RTL++        T TSSGT++ +ET +++T   +W+S+  + L D EW+SI EV++
Sbjct:    5 AASVEASTLANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDT-MGRWISIVGV-LADSEWLSIMEVKI 149          
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.190e-17
Identity = 58/152 (38.16%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   64 VEARKRTTVKKWANAYDDRTSEYGGCDPDGCKASLTRDQSWNDESRWSCSEKLEDA-------QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDIN----TDETKWLSMEALNLDDDEWISITEVRM 486
            VEA + TTV    NA+D RT +  GC PDGC    TRD    D SRWSCS  L +A       +C++ ++  E Q +  + + F KGD R RTL +  +G   + +TS GT+S  ET++++          L ME+  L  DE++SI EV +
Sbjct:  248 VEAGEVTTVTVTTNAFDARTDD-DGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEI 398          
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.450e-14
Identity = 59/148 (39.86%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   55 SALVEARKRTTVKKWANAYDDR-TSEYGGCDPDGCKASLTRD-QSWNDESRWSCSEKLEDAQ--CKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRM 486
            +A+VEA    TV   A  YD   T+  GGC P GC    TRD  + + ESRWSC   L DA   C+ITY       +  + I  YKGDER RTL++          TSSGT++ +ET +++T   +W+ +  + L+D EW+SI EV +
Sbjct:   23 AAVVEASTLATVTVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEINIDNLPYTVWTSSGTTTDFETIEVDT-MGRWIDIVGV-LEDSEWLSIMEVEI 168          
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.420e-12
Identity = 55/148 (37.16%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   64 VEARKRTTVKKWANAYDDRTSEYGG------CDPDGCKASLTRDQSWND-ESRWSCSEKLEDA--QCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEV 480
            VE   +T V   A AYD R     G         +GC  + TRD   N+ ESRWSC+ K+      C+I Y F EPQDI  IK+ F+ GDERVRTL++   G   +T  S    S + +  ++      + +E+++L ++EWIS+ EV
Sbjct:  479 VEVGTKTDVSVSATAYDTRPGSSSGDVGCGEAGGNGCSPANTRDGISNETESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVYFDGTLHRTHESYA-GSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625          
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Match: UPI0014728A14 (hypothetical protein n=1 Tax=Neobacillus soli TaxID=220688 RepID=UPI0014728A14)

HSP 1 Score: 55.5 bits (132), Expect = 2.560e-7
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query:  262 PQDIVRIKIKFYKGDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALN--LDDDEWISITEVRM 486
            PQDI +I I F+ G  R RTL +  +  +  TITSSG +  +ET+D+ TDETK L +   +   + D W+SITEV +
Sbjct:    1 PQDIEKIAIAFHLGTSRTRTLDVFNNHYYHSTITSSGKTDGFETFDLYTDETKELKLCVFDPKWNTDVWLSITEVEI 77          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G122_ECTSI6.990e-9495.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4E8_9PHAE5.010e-6580.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTH1_ECTSI8.520e-2043.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE3.410e-1842.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G277_ECTSI5.190e-1738.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL74_9PHAE1.450e-1439.86F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5JTT4_9PHAE3.420e-1237.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0014728A142.560e-744.16hypothetical protein n=1 Tax=Neobacillus soli TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1424contigE-siliculosus-1a_F_contig1424:25866..26822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size492
Model size492
Exons2
Ec32 orthologEc-19_002200.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsCOG4886@1,KOG0619@2759
EggNOG free text desc.regulation of response to stimulus
Seed eggNOG ortholog2880.D7FL48
Seed ortholog evalue8.9e-20
Seed ortholog score103.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927940.0091503-CDS-E-siliculosus-1a_F_contig1424:25865..259231622927940.0091503-CDS-E-siliculosus-1a_F_contig1424:25865..25923Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1424 25866..25923 +
1696318745.5995529-CDS-E-siliculosus-1a_F_contig1424:25865..259231696318745.5995529-CDS-E-siliculosus-1a_F_contig1424:25865..25923Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1424 25866..25923 +
1622927940.0188239-CDS-E-siliculosus-1a_F_contig1424:26388..268221622927940.0188239-CDS-E-siliculosus-1a_F_contig1424:26388..26822Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1424 26389..26822 +
1696318745.611025-CDS-E-siliculosus-1a_F_contig1424:26388..268221696318745.611025-CDS-E-siliculosus-1a_F_contig1424:26388..26822Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1424 26389..26822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1424.2503.1prot_E-siliculosus-1a_F_contig1424.2503.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1424 25866..26822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1424.2503.1

>prot_E-siliculosus-1a_F_contig1424.2503.1 ID=prot_E-siliculosus-1a_F_contig1424.2503.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=164bp
MHSFGIFALAFAAVLGTSSALVEARKRTTVKKWANAYDDRTSEYGGCDPD
GCKASLTRDQSWNDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYK
GDERVRTLKLKGSGGFKKTITSSGTSSKYETWDINTDETKWLSMEALNLD
DDEWISITEVRME*
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mRNA from alignment at E-siliculosus-1a_F_contig1424:25866..26822+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1424.2503.1 ID=mRNA_E-siliculosus-1a_F_contig1424.2503.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=957bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1424:25866..26822+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACTCCTTTGGTATTTTCGCCCTGGCCTTCGCCGCTGTGCTTGGCAC CTCCTCTGGTAAGCGATGTGCAACAATATCTAACTGCTGTGCGGATTTGC ATATATGTCCCTATCGAGGTGTTGTGAGAATGGCATCTGCGGATTTACGT TCCCCTGTCGAGGTGTTCTTGCTTGAAGACGCGACGACCATGGCACACAA GGACAGCACGGTAGCCCCACAGTCTGCGCCTAGGCATCTAAGTGCGCGCG TATGCGTGTGCCTCTCCGTGGCTCGTCGGCTGTGGATGCAATGTAGAGCC ACCCTCCACATGCCGCACTTAGACTGACTGAAGGGGTAGTTCTTCGTCGA TTCTTCATCTTCCACATCATATTCGACACTTGTACGCCCACATGTGAAAT CTTGTGCGTAAGCCGGCAGTGCCCGAAACCACCCGCTACTTTCTTCCTTC CTTGTCTCTAACCCCTTCGCCCCCCCCGGCGACCATTGTTTCCGATCCTT GATGACAACAACGAAAAAAGCAGCCCTCGTTGAAGCGCGCAAGAGGACCA CCGTCAAGAAGTGGGCCAACGCCTACGACGACAGAACGTCGGAGTACGGA GGCTGCGACCCCGACGGCTGCAAGGCCTCCCTCACGCGCGACCAGAGCTG GAACGACGAGTCCCGCTGGAGCTGCAGCGAGAAGCTCGAAGACGCCCAGT GCAAGATCACGTACAAGTTCGAAGAGCCCCAAGACATCGTACGCATCAAG ATCAAGTTCTACAAAGGGGACGAGCGCGTCCGGACCCTGAAGCTCAAGGG AAGCGGCGGGTTCAAGAAAACCATCACCTCTAGCGGAACGTCCAGCAAGT ACGAGACGTGGGACATCAACACCGACGAGACGAAGTGGTTGAGCATGGAG GCGCTGAACCTCGACGACGACGAGTGGATCAGCATCACCGAGGTGCGGAT GGAATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1424:25866..26822+

>mRNA_E-siliculosus-1a_F_contig1424.2503.1 ID=mRNA_E-siliculosus-1a_F_contig1424.2503.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1424:25866..26822+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACTCCTTTGGTATTTTCGCCCTGGCCTTCGCCGCTGTGCTTGGCAC
CTCCTCTGATGCACTCCTTTGGTATTTTCGCCCTGGCCTTCGCCGCTGTG
CTTGGCACCTCCTCTGCCCTCGTTGAAGCGCGCAAGAGGACCACCGTCAA
GAAGTGGGCCAACGCCTACGACGACAGAACGTCGGAGTACGGAGGCTGCG
ACCCCGACGGCTGCAAGGCCTCCCTCACGCGCGACCAGAGCTGGAACGAC
GAGTCCCGCTGGAGCTGCAGCGAGAAGCTCGAAGACGCCCAGTGCAAGAT
CACGTACAAGTTCGAAGAGCCCCAAGACATCGTACGCATCAAGATCAAGT
TCTACAAAGGGGACGAGCGCGTCCGGACCCTGAAGCTCAAGGGAAGCGGC
GGGTTCAAGAAAACCATCACCTCTAGCGGAACGTCCAGCAAGTACGAGAC
GTGGGACATCAACACCGACGAGACGAAGTGGTTGAGCATGGAGGCGCTGA
ACCTCGACGACGACGAGTGGATCAGCATCACCGAGGTGCGGATGGAATAA
CCCTCGTTGAAGCGCGCAAGAGGACCACCGTCAAGAAGTGGGCCAACGCC
TACGACGACAGAACGTCGGAGTACGGAGGCTGCGACCCCGACGGCTGCAA
GGCCTCCCTCACGCGCGACCAGAGCTGGAACGACGAGTCCCGCTGGAGCT
GCAGCGAGAAGCTCGAAGACGCCCAGTGCAAGATCACGTACAAGTTCGAA
GAGCCCCAAGACATCGTACGCATCAAGATCAAGTTCTACAAAGGGGACGA
GCGCGTCCGGACCCTGAAGCTCAAGGGAAGCGGCGGGTTCAAGAAAACCA
TCACCTCTAGCGGAACGTCCAGCAAGTACGAGACGTGGGACATCAACACC
GACGAGACGAAGTGGTTGAGCATGGAGGCGCTGAACCTCGACGACGACGA
GTGGATCAGCATCACCGAGGTGCGGATGGAATAA
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