mRNA_E-siliculosus-1a_F_contig1424.2502.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1424.2502.1
Unique NamemRNA_E-siliculosus-1a_F_contig1424.2502.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1424contigE-siliculosus-1a_F_contig1424:24584..24724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size141
Model size141
Exons1
Ec32 orthologEc-19_002190.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927939.9782405-CDS-E-siliculosus-1a_F_contig1424:24583..247241622927939.9782405-CDS-E-siliculosus-1a_F_contig1424:24583..24724Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1424 24584..24724 -
1696318745.5884142-CDS-E-siliculosus-1a_F_contig1424:24583..247241696318745.5884142-CDS-E-siliculosus-1a_F_contig1424:24583..24724Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1424 24584..24724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1424.2502.1prot_E-siliculosus-1a_F_contig1424.2502.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1424 24584..24724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1424.2502.1

>prot_E-siliculosus-1a_F_contig1424.2502.1 ID=prot_E-siliculosus-1a_F_contig1424.2502.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2502.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=47bp
MSSRTDRTRRTLCVLLKTPIVVMMPCHERKPSYANTRVRGRWTPHV*
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mRNA from alignment at E-siliculosus-1a_F_contig1424:24584..24724-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1424.2502.1 ID=mRNA_E-siliculosus-1a_F_contig1424.2502.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2502.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=141bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1424:24584..24724- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGTCACGAACGGATAGAACGAGGAGAACGCTGTGTGTATTGCTGAA
GACTCCAATCGTCGTAATGATGCCATGTCACGAACGGAAGCCAAGCTACG
CGAACACTAGGGTTAGAGGGAGATGGACACCACACGTATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1424:24584..24724-

>mRNA_E-siliculosus-1a_F_contig1424.2502.1 ID=mRNA_E-siliculosus-1a_F_contig1424.2502.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2502.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=282bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1424:24584..24724- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGTCACGAACGGATAGAACGAGGAGAACGCTGTGTGTATTGCTGAA
GACTCCAATCGTCGTAATGATGCCATGTCACGAACGGAAGCCAAGCTACG
CGAACACTAGGGTTAGAGGGAGATGGACACCACACGTATGAATGTCGTCA
CGAACGGATAGAACGAGGAGAACGCTGTGTGTATTGCTGAAGACTCCAAT
CGTCGTAATGATGCCATGTCACGAACGGAAGCCAAGCTACGCGAACACTA
GGGTTAGAGGGAGATGGACACCACACGTATGA
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