mRNA_E-siliculosus-1a_F_contig1424.2501.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1424.2501.1
Unique NamemRNA_E-siliculosus-1a_F_contig1424.2501.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1424.2501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1424contigE-siliculosus-1a_F_contig1424:20109..21153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size171
Model size302
Exons2
Ec32 orthologEc-19_002170.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1424.2501.1prot_E-siliculosus-1a_F_contig1424.2501.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1424 20109..20279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927939.033071-CDS-E-siliculosus-1a_F_contig1424:20108..202791622927939.033071-CDS-E-siliculosus-1a_F_contig1424:20108..20279Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1424 20109..20279 +
1696318745.5585492-CDS-E-siliculosus-1a_F_contig1424:20108..202791696318745.5585492-CDS-E-siliculosus-1a_F_contig1424:20108..20279Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1424 20109..20279 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927939.0464292-UTR-E-siliculosus-1a_F_contig1424:20279..202901622927939.0464292-UTR-E-siliculosus-1a_F_contig1424:20279..20290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1424 20280..20290 +
1696318745.5683079-UTR-E-siliculosus-1a_F_contig1424:20279..202901696318745.5683079-UTR-E-siliculosus-1a_F_contig1424:20279..20290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1424 20280..20290 +
1622927939.601408-UTR-E-siliculosus-1a_F_contig1424:21033..211531622927939.601408-UTR-E-siliculosus-1a_F_contig1424:21033..21153Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1424 21034..21153 +
1696318745.578-UTR-E-siliculosus-1a_F_contig1424:21033..211531696318745.578-UTR-E-siliculosus-1a_F_contig1424:21033..21153Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1424 21034..21153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1424.2501.1

>prot_E-siliculosus-1a_F_contig1424.2501.1 ID=prot_E-siliculosus-1a_F_contig1424.2501.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2501.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
MVPVRLVGLASVKTAARRTSSGTSSSSKSPAARIHRYRLSFASVLRYSRC
GALLRR*
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mRNA from alignment at E-siliculosus-1a_F_contig1424:20109..21153+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1424.2501.1 ID=mRNA_E-siliculosus-1a_F_contig1424.2501.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2501.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1045bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1424:20109..21153+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGCCCGTCCGGCTCGTAGGCCTGGCAAGCGTCAAGACGGCTGCGAG
GCGTACATCCAGCGGCACATCTTCGAGTTCGAAGTCCCCAGCAGCCAGGA
TCCACAGATACAGATTATCCTTCGCAAGTGTTCTTCGGTACAGTAGGTGC
GGGGCTCTCCTCCGGAGGTAGGTGCTGCTGTAGTGCGCTCGACGGATCGC
AGAGTCCCAGGAGCTAGTAGTCAGGCAGAGTCCAGGAGCTGCTGGTTTGT
AGTTAGGCATGGGATCCGTGGGCTCCACACTACTGTAGGTATTCGGCTGT
TCAGGTGGTCAGGTCCAAGAATGGTCTGATCTCCGACGATGGCGTGCAGA
AAGAATATGGTATTAAGACTACTGCTGTAGCGTGGTGTTTGAGTAGACCT
CTAGTGTAGTCTTTGGTATGGCCAGAGTTTTTATATGGCGCCGCAGGCGT
AGCATAGTTGGCTCATTTTGCTTCAAAGTCTGCAGACGTAATGGTGTCTG
CAGATATACCTTTAATGTGATGTTGGTCCAGCGTGACAATTTGCTGCAGC
AGTCCTTGTATTGCACAACAGCATTCGTACGTGCAATCCTGAAACGTTAT
TATAGTCCGATTGTGTTTCGTTTCGAGCGTGAGGGTGAATGTCAGCGTCA
AGCGGCCAGCAGCACACGTTGTCACCCACCGAGAAGCGAGACTCCAGAGT
TGCGCGCCGATTCGGTAGTCGTCTCGTGTCGATGGCTACGGTACACACGC
ACGTGTCCTCCTCCGCAAATGTACGAGACCGCCGTTACATTGGCGGCGCA
ATCGCAGGAGACAGGTCCACACCGCGGCAACACACCACCTCGCTAAATTC
ACTCGCACACTCGTGTCCCCCCCTCCCGTAACAAACACAAACAATCAAAT
ACTCAGATCCGGGGATGTGCGTCAGCCCGCGCGGCCCTGCAGTGCGTCCT
CTGGGCGACCGAGGGCCGCGAGGGGGCCTACCTCCTCGGCCGTGTACAAC
CTGGGGGGAGGAGCAGGAGGCGTGGACAACGCCGACAGCAGGGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1424:20109..21153+

>mRNA_E-siliculosus-1a_F_contig1424.2501.1 ID=mRNA_E-siliculosus-1a_F_contig1424.2501.1|Name=mRNA_E-siliculosus-1a_F_contig1424.2501.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1424:20109..21153+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGCCCGTCCGGCTCGTAGGCCTGGCAAGCGTCAAGACGGCTGCGAG
GCGTACATCCAGCGGCACATCTTCGAGTTCGAAGTCCCCAGCAGCCAGGA
TCCACAGATACAGATTATCCTTCGCAAGTGTTCTTCGGTACAGTAGGTGC
GGGGCTCTCCTCCGGAGGTAGATGGTGCCCGTCCGGCTCGTAGGCCTGGC
AAGCGTCAAGACGGCTGCGAGGCGTACATCCAGCGGCACATCTTCGAGTT
CGAAGTCCCCAGCAGCCAGGATCCACAGATACAGATTATCCTTCGCAAGT
GTTCTTCGGTACAGTAGGTGCGGGGCTCTCCTCCGGAGGTAG
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