mRNA_E-siliculosus-1a_F_contig1423.2496.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1423.2496.1
Unique NamemRNA_E-siliculosus-1a_F_contig1423.2496.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1423.2496.1 vs. uniprot
Match: D8LEU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU1_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 1.230e-90
Identity = 144/158 (91.14%), Postives = 146/158 (92.41%), Query Frame = 3 
Query:   12 HPCPAFRPSPRTAMKWATLGALLLCKASAFHLPGVVRVGPPRRANSVVERREARHAAGRVLACTAEDEGNKGVADEDDPLDLNLDDFSEAEISDAELDKMLQAVEHGISRHKPKALDSEAGRRGEVDEAKMIMLLRQKMGEEDFYAVFDPRNPRIGDV 485
            HPC         AMKWATLGALLLCKASAFHLPGVVRVGP RRANSV+ERREARHAAGRVLACTA+DE NKGVADEDDPLDLNLDDFSEAEISDAELDKMLQAVEHGISRHKPKALD EAGRRGEVDEAKMIMLLRQKMGEEDFYAVFDPRNPRIGDV
Sbjct:   62 HPC---------AMKWATLGALLLCKASAFHLPGVVRVGPSRRANSVLERREARHAAGRVLACTAKDEANKGVADEDDPLDLNLDDFSEAEISDAELDKMLQAVEHGISRHKPKALDGEAGRRGEVDEAKMIMLLRQKMGEEDFYAVFDPRNPRIGDV 210
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BLAST of mRNA_E-siliculosus-1a_F_contig1423.2496.1 vs. uniprot
Match: A0A6H5KFW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW8_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 8.840e-85
Identity = 133/145 (91.72%), Postives = 138/145 (95.17%), Query Frame = 3 
Query:   51 MKWATLGALLLCKASAFHLPGVVRVGPPRRANSVVERREARHAAGRVLACTAEDEGNKGVADEDDPLDLNLDDFSEAEISDAELDKMLQAVEHGISRHKPKALDSEAGRRGEVDEAKMIMLLRQKMGEEDFYAVFDPRNPRIGDV 485
            MKWATLGALLLCK SAFHLP V RVGP RRANSV++RREARHAAGRVLACTA+DEGNKGVADEDDPLDLNLDDFSEAEISDAELDKML AVEHGISRHK KAL S+AG+RGEVDEAKMIMLLRQKMGEEDFYAVFDPRNPRIGDV
Sbjct:    1 MKWATLGALLLCKVSAFHLPWVARVGPSRRANSVLDRREARHAAGRVLACTAKDEGNKGVADEDDPLDLNLDDFSEAEISDAELDKMLHAVEHGISRHKTKALGSKAGQRGEVDEAKMIMLLRQKMGEEDFYAVFDPRNPRIGDV 145
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1423.2496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEU1_ECTSI1.230e-9091.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFW8_9PHAE8.840e-8591.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1423contigE-siliculosus-1a_F_contig1423:15602..17469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size438
Model size1038
Exons3
Ec32 orthologEc-21_005580.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1423.2496.1prot_E-siliculosus-1a_F_contig1423.2496.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1423 15652..16919 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927938.0696604-UTR-E-siliculosus-1a_F_contig1423:15601..156511622927938.0696604-UTR-E-siliculosus-1a_F_contig1423:15601..15651Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1423 15602..15651 +
1696318745.1274385-UTR-E-siliculosus-1a_F_contig1423:15601..156511696318745.1274385-UTR-E-siliculosus-1a_F_contig1423:15601..15651Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1423 15602..15651 +
1622927938.1129565-UTR-E-siliculosus-1a_F_contig1423:16919..174691622927938.1129565-UTR-E-siliculosus-1a_F_contig1423:16919..17469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1423 16920..17469 +
1696318745.1655772-UTR-E-siliculosus-1a_F_contig1423:16919..174691696318745.1655772-UTR-E-siliculosus-1a_F_contig1423:16919..17469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1423 16920..17469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927938.0818288-CDS-E-siliculosus-1a_F_contig1423:15651..158251622927938.0818288-CDS-E-siliculosus-1a_F_contig1423:15651..15825Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1423 15652..15825 +
1696318745.1364186-CDS-E-siliculosus-1a_F_contig1423:15651..158251696318745.1364186-CDS-E-siliculosus-1a_F_contig1423:15651..15825Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1423 15652..15825 +
1622927938.0929377-CDS-E-siliculosus-1a_F_contig1423:16175..163461622927938.0929377-CDS-E-siliculosus-1a_F_contig1423:16175..16346Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1423 16176..16346 +
1696318745.1483781-CDS-E-siliculosus-1a_F_contig1423:16175..163461696318745.1483781-CDS-E-siliculosus-1a_F_contig1423:16175..16346Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1423 16176..16346 +
1622927938.1032376-CDS-E-siliculosus-1a_F_contig1423:16826..169191622927938.1032376-CDS-E-siliculosus-1a_F_contig1423:16826..16919Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1423 16827..16919 +
1696318745.1570778-CDS-E-siliculosus-1a_F_contig1423:16826..169191696318745.1570778-CDS-E-siliculosus-1a_F_contig1423:16826..16919Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1423 16827..16919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1423.2496.1

>prot_E-siliculosus-1a_F_contig1423.2496.1 ID=prot_E-siliculosus-1a_F_contig1423.2496.1|Name=mRNA_E-siliculosus-1a_F_contig1423.2496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=146bp
MKWATLGALLLCKASAFHLPGVVRVGPPRRANSVVERREARHAAGRVLAC
TAEDEGNKGVADEDDPLDLNLDDFSEAEISDAELDKMLQAVEHGISRHKP
KALDSEAGRRGEVDEAKMIMLLRQKMGEEDFYAVFDPRNPRIGDV*
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mRNA from alignment at E-siliculosus-1a_F_contig1423:15602..17469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1423.2496.1 ID=mRNA_E-siliculosus-1a_F_contig1423.2496.1|Name=mRNA_E-siliculosus-1a_F_contig1423.2496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1868bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1423:15602..17469+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCACAACAACACACCCCTGCCCCGCCTTTCGCCCTTCTCCCCGCACAGCG
ATGAAATGGGCGACACTAGGAGCGCTCCTTTTGTGTAAGGCATCAGCCTT
CCACTTGCCTGGGGTTGTACGCGTTGGGCCACCACGGAGAGCCAACTCCG
TTGTTGAACGGCGGGAGGCGAGACATGCTGCTGGTCGAGTCTTAGCCTGC
ACCGCAGAGGACGAGGGCAACAAGGTGCGACAACAGCGGTAGGAGCAGAT
TGAGTGAGACACAGAAAACTTCGCCAAATGTATCGCCTCCATTCGATGCG
TGTGTAATCCGTGCAGCAGCTGCTGCTGCTGTGGTACAACTTGAAAGTGG
TTCTTCCGAAGGCAGTGTCCTCAGACAAAAGCAGGATTTCTCCCCCACTC
ACTGCAAAAGACCTTCAACACCCCCCTCGACTGAATGTTTGCAAGCTACC
TGGTGGTATTTCAGTGATGGGTATTTTCTAGAAACAACCGTCACGACGAC
TCATGGCCTGTCTGGCGATACCCCAACCCCTTCCACCGCCTCATTTCTCG
CCCGATCATCGCGACGTGTGGCAGGGTGTGGCTGACGAGGATGATCCTCT
GGACCTGAACCTTGATGATTTCAGCGAAGCCGAAATATCAGACGCGGAGC
TGGACAAGATGCTGCAGGCGGTGGAGCATGGGATCTCAAGACACAAACCG
AAGGCATTGGATAGTGAGGCTGGACGACGTGGGGAGGTGGACGAGGTGAG
CAACTGGAACGACCAGCGTGTACTTAATACGTTGACTCCGACACTGGCAA
CCCTTCCTGAAGCTTCAGTGCAGCTATTCAAGAGCACAAGCCACGTATGG
AGTATGTAGGCACCACGTATGAAGTACACTTTCCCTTACCGGCTGTATAA
AACTTTTGCTTACAGCAAGCAGTTGTACACCAGCGTCTCCAATGGCATGG
CAAGGTACGTGTGAGCTGCAGCTGCCGCTTTGACTGATATCGCCGGCAGT
GTGCGGCAAACAGCTTATGTAGTTCTTTTTTTCTGTGTATAGACTCTTCC
CTGCCACCGTGGTTCTGTTGGCGGGGTGTGTTCTGCTGCCGGTTGTCATC
CGCCAGCGTTCAACGTCGGGCGGGGCCTCCATAAGCGAAGTGTCTCTGGT
ACAATCCCTTGTAGCATGGCACCCTCACGCCCCCTCTTTGTCCGATCCCT
TTTCCGGAACCTCCTCCCCCCGCAGGCGAAGATGATCATGCTGCTCAGGC
AAAAGATGGGCGAGGAAGACTTCTACGCGGTGTTTGATCCCAGGAATCCG
CGTATTGGGGATGTCTGAGACATGTGGTATTCATTAGGCGCGTGTGGCAC
GAGCAAGTGTGTGTTTGTTCTTGCAGTATTTTGAACGCCTCCCCCCCCAC
TATTGTAGCGCTTTTCTGTAGACAGCGTGAGAAAAGCAGAGCTTTGATTG
TAGATGTTGTGCATCGTGTTTGCTGTTTAATTTTACGTAGTGTCAATTAT
ACCTCATGGATATGCATTTTTCTTGGTTTTCTCCTATACGATGTTTCGTT
TGTAGGCCTGTGTCCAGTTTTGTTGAAATACCAGTCCTGTCATTCACATG
ACGGGTTCAATTCGAGAGTGGCACCAAAGCATCTATGTAGCGCGATCTGT
TTTCTTAAGCTATTTTTTTAGCTGCCCGGGAGGGGAAAACATGGCTTCCC
GGTCTAATCGGCAGGGGGGTGATTCCTTGAAATACAACCACGACTGCAGG
GGGAGAGGTTACGATAGGCACACCGTTCTGCTGGCTATGTAATCGCATGC
CGCAGATTTTTTGTACAGCAATCGCGTGGAAAACGACGGCAATTGCCATT
CACGACCTCAACGACTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1423:15602..17469+

>mRNA_E-siliculosus-1a_F_contig1423.2496.1 ID=mRNA_E-siliculosus-1a_F_contig1423.2496.1|Name=mRNA_E-siliculosus-1a_F_contig1423.2496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1423:15602..17469+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAATGGGCGACACTAGGAGCGCTCCTTTTGTGTAAGGCATCAGCCTT
CCACTTGCCTGGGGTTGTACGCGTTGGGCCACCACGGAGAGCCAACTCCG
TTGTTGAACGGCGGGAGGCGAGACATGCTGCTGGTCGAGTCTTAGCCTGC
ACCGCAGAGGACGAGGGCAACAAGATGAAATGGGCGACACTAGGAGCGCT
CCTTTTGTGTAAGGCATCAGCCTTCCACTTGCCTGGGGTTGTACGCGTTG
GGCCACCACGGAGAGCCAACTCCGTTGTTGAACGGCGGGAGGCGAGACAT
GCTGCTGGTCGAGTCTTAGCCTGCACCGCAGAGGACGAGGGCAACAAGGG
TGTGGCTGACGAGGATGATCCTCTGGACCTGAACCTTGATGATTTCAGCG
AAGCCGAAATATCAGACGCGGAGCTGGACAAGATGCTGCAGGCGGTGGAG
CATGGGATCTCAAGACACAAACCGAAGGCATTGGATAGTGAGGCTGGACG
ACGTGGGGAGGTGGACGAGGGTGTGGCTGACGAGGATGATCCTCTGGACC
TGAACCTTGATGATTTCAGCGAAGCCGAAATATCAGACGCGGAGCTGGAC
AAGATGCTGCAGGCGGTGGAGCATGGGATCTCAAGACACAAACCGAAGGC
ATTGGATAGTGAGGCTGGACGACGTGGGGAGGTGGACGAGGCGAAGATGA
TCATGCTGCTCAGGCAAAAGATGGGCGAGGAAGACTTCTACGCGGTGTTT
GATCCCAGGAATCCGCGTATTGGGGATGTCTGAGCGAAGATGATCATGCT
GCTCAGGCAAAAGATGGGCGAGGAAGACTTCTACGCGGTGTTTGATCCCA
GGAATCCGCGTATTGGGGATGTCTGA
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