mRNA_E-siliculosus-1a_F_contig1422.2492.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE) HSP 1 Score: 846 bits (2186), Expect = 1.320e-305 Identity = 420/532 (78.95%), Postives = 441/532 (82.89%), Query Frame = 3
Query: 6 PTTISHTLLLILLSPSSLPRSPPLLVVSTGCVQQQTAATSIMTRLAAALLVCATPVASLETSLRGAEVAAAAGGARRGLSGSSYESYEHLGCYVDNGMVNSRPNLPLVMEEMTNEMCYDRCHELGAFFMGTQKGNECRCSREEDLDYSSFEFGVCDAPCAGDSAETCGGQLTLDLYKLTSAEEPDHEEYVGCWSDTNESRLMEDMLVDEGMTTDMCRDHCEETDAVYYATQYGNECFCGYSSDPEDYETHGQGTCHMHCAGDSGSACGGYWAFSLYKFGADGMPEPTVPAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTPTPEP-VSSGGGGGDVSGGEYGTTFNGDGTYYTGISAGNCGYFDDFPSIYSGMAPVALNAPQYGDSLMCGSCVEGEGTGGGSGNDPVGTFKGFIMDKCPECSEGDLDFGTGLDGRWDIEWKFVACPGEEVSFKVVEMTPWYWKLQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGDPWYEPQMVVTTTVGGVVEETEMS 1598
PTT + L P SL P V STGCV TAATSIMTRLAAALLVCATPVASLETSLRGAEVAAAAGGARRGLSGSSYESYEHLGCYVDNGMVNS P+LPLV++ MTNE+CYDRCHELGAFFMGTQKGNECRCSREEDLDY SFE GVCD PCAGDS ETCGG LTLDLYKLT A+EPDHEEY GCWSD ESR+M+DMLVDE MTTDMCRDHCE +DAVYYATQYGNECFCGYSSDPEDYETHG GTCHMHCAGDSGSACGGYWAFSL+KFGADGMP+P VP V TP P +S +SGG YGTTF GDGTYYTGISAGNCG+FDDFPSIYSGM PVALNA QYGDSLMCGSCVEGEGTGGG G++P+GTFKGFIMDKCPEC EGDLDFGTGLDGRWDIEW+FVACPGEEVSFKVVEMTP+YWK+QPRGTATPVESLTIGGRAAARTDDNHFELEHPSG+PWYEPQMVVTTTVGGVVEETEMS
Sbjct: 29 PTTTPASTHSSALLPHSLALPP---VASTGCVP--TAATSIMTRLAAALLVCATPVASLETSLRGAEVAAAAGGARRGLSGSSYESYEHLGCYVDNGMVNSSPHLPLVLDAMTNELCYDRCHELGAFFMGTQKGNECRCSREEDLDYFSFESGVCDEPCAGDSTETCGGDLTLDLYKLTPADEPDHEEYEGCWSDLGESRVMQDMLVDESMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGPGTCHMHCAGDSGSACGGYWAFSLFKFGADGMPDPAVP--------------------------DVSEPPSEPAPEPVVSTPAPSMSEAESKTPISGGVYGTTFEGDGTYYTGISAGNCGFFDDFPSIYSGMTPVALNAAQYGDSLMCGSCVEGEGTGGGGGDNPIGTFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEVSFKVVEMTPYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGNPWYEPQMVVTTTVGGVVEETEMS 529
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI) HSP 1 Score: 830 bits (2143), Expect = 1.200e-299 Identity = 437/495 (88.28%), Postives = 459/495 (92.73%), Query Frame = 3
Query: 129 MTRLAAALLVCATPVASLETSLRGAEVAAAAGGARRGLSGSSYESYEHLGCYVDNGMVNSRPNLPLVMEEMTNEMCYDRCHELGAFFMGTQKGNECRCSREEDLDYSSFEFGVCDAPCAGDSAETCGGQLTLDLYKLTSAEEPDHEEYVGCWSDTNESRLMEDMLVDEGMTTDMCRDHCEETDAVYYATQYGNECFCGYSSDPEDYETHGQGTCHMHCAGDSGSACGGYWAFSLYKFGADGMPEPTVPAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTPTPEP----VSSGGGGGDVSGGEYGTTFNGDGTYYTGISAGNCGYFDDFPSIYSGMAPVALNAPQYGDSLMCGSCVEGEGTGGGSGNDPVGTFKGFIMDKCPECSEGDLDFGTGLDGRWDIEWKFVACP-GEEVSFKVVEMTPWYWKLQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGDPWYEPQMVVTTTVGGVVEETEMS 1598
MTRLAAALLVCATPVASLETSLRGAEV+A GGARRGLSGSSYE+YEH+GCYVDNGMVN+RP+LPLVME MTNEMCYDRCHELG+FFMGTQKGNECRCSREEDL YS+F+FGVCD PCAGDS ETCGGQLT+DLYKLT+A+ PDHEEYVGCWSD NESR+MEDMLVDEGMTTDMCRDHCE +DAVYYATQYGNECFCGYSSDPEDYETHG GTCHMHC GDSGSACGGYWAFSLY+FGADGMPEP VP TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VSSGGGGGDVSGGEYG TFNG+GTYYTG SAGNCG+FDDFPSIY GM PVALN PQYGDSLMCG+CVEGEGTGGGSG+DPVGTFKGFIMDKCPECSEGDLDFGTG DGRWDI+WKFV CP GEEVSFKV + T +YWK+QPRGTATPVESLTIGGRAAARTDDNHFELEHPSGDPWYEPQMVVTTTVGGVVEETEMS
Sbjct: 1 MTRLAAALLVCATPVASLETSLRGAEVSA--GGARRGLSGSSYEAYEHVGCYVDNGMVNARPHLPLVMETMTNEMCYDRCHELGSFFMGTQKGNECRCSREEDLAYSAFDFGVCDIPCAGDSDETCGGQLTIDLYKLTAAQTPDHEEYVGCWSDANESRVMEDMLVDEGMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQFGADGMPEPDVPESTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGGGGGDVSGGEYGITFNGEGTYYTGTSAGNCGFFDDFPSIYDGMTPVALNEPQYGDSLMCGACVEGEGTGGGSGSDPVGTFKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGDPWYEPQMVVTTTVGGVVEETEMS 493
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI) HSP 1 Score: 254 bits (650), Expect = 5.160e-77 Identity = 119/187 (63.64%), Postives = 138/187 (73.80%), Query Frame = 3
Query: 1041 SGGEYGTTFNGDGTYYTGISAGNCGYFDDFPSIYSGMAPVALNAPQYGDSLMCGSCVEGEGTGGGSGNDPV-GTFKGFIMDKCPECSEGDLDFGTGLDGRWDIEWKFVACPGEEVSFKVVEMTPWYWKLQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGDPWYEPQMVVTTTVGGVVEETEMS 1598
SGG+YG ++G+GTYY +AG C +FDD P +Y GM PVALNA QYGDSLMCG+CVEG +G GSGN+P+ TFK FI DKCPEC +GDLDF DGRWDIEWKFVACPGEE SF P+YWK+QPRGT TPV SLT+ G++A RT DNHFE+ H G W Q VVTTTV GV E E+S
Sbjct: 100 SGGQYGEEYSGEGTYYGHTTAGMCSFFDDVPEMYDGMIPVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGEETSFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRTTDNHFEV-HNDGAAWSGAQTVVTTTVSGVTETAEVS 285
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 212 bits (540), Expect = 3.920e-55 Identity = 97/205 (47.32%), Postives = 131/205 (63.90%), Query Frame = 3
Query: 261 SYEHLGCYVDNGMVNSRPNLPLVMEEMTNEMCYDRCHELGAFFMGTQKGNECRCSREEDLDYSSF-EFGVCDAPCAGDSAETCGGQLTLDLYKLTSAEEPDHEEYVGCWSDTNESRLMEDMLVDEGMTTDMCRDHCEETDAVYYATQYGNECFCGYSSDPEDYETHGQGTCHMHCAGDSGSACGGYWAFSLYKFGADGMPEPTVP 872
+YEH+GC+ D+ L+ +MT E+CY+ C GA +M TQ G EC CSR+ LDY + GVCD PC GD +ETCGG + +LY+L+ A P+ EEYVGC++D R++ DM+ + MT +CR+HC + DA YY TQ+ +EC+CG S D DYE HG+G CHM C+GD ACGGY A+SL+K+ G T P
Sbjct: 1144 AYEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCRGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKYDNGGEAPTTAP 1348
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI) HSP 1 Score: 190 bits (483), Expect = 4.490e-48 Identity = 93/208 (44.71%), Postives = 129/208 (62.02%), Query Frame = 3
Query: 258 ESYEHLGCYVDNGMVNSRPNLPLVMEEMTNEMCYDRCHELGAFFMGTQKGNECRCSREEDLDYSSFEFGVCDAPCAGDSAETCGGQLTLDLYKLTSAEEPDHEEYVGCWSDTNESRLMEDML-VDEGMTTDMCRDHCEETDAVYYATQYGNECFCGYSSDPEDYETHGQGTCHMHCAGDSGSACGGYWAFSLYKFGADGMPEPTVPAP 878
E Y ++GC+ D+ + MT +C + C + A +M TQ G EC CS + +++Y GVCD C GD+A+ CGG DLYK+T EP +EYVGC++D E RL+ D + + MT +CR +CEE DA +YATQYG+EC+CG S+D EDY+ HG+G+C C+GD ACGG+ AF+L+KF DG+ EP P P
Sbjct: 431 EGYSYVGCFADSKEDRVFEYMK-TSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSDGVCDHACGGDAADICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF--DGIAEPIAPTP 635
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE) HSP 1 Score: 174 bits (440), Expect = 3.030e-44 Identity = 92/238 (38.66%), Postives = 129/238 (54.20%), Query Frame = 3
Query: 258 ESYEHLGCYVDNG------MVNSRPNLPLVMEEMTNEMCYDRCHELGAFFMGTQKGNECRCSREEDLDYSSFEFGVCDAPCAGDSAETCGGQLTLDLYKLTSAEEPDHEEYVGCWSDTNESRLMEDML-VDEGMTTDMCRDHCEETDAVYYATQYGNECFCGYSSDPEDYETHGQGTCHMHCAGDSGSACG------------------------GYWAFSLYKFGADGMPEPTVPAP 878
E Y ++GC+ D+ + + P MT +C + C + A FM TQ G EC CS + +++Y GVCD C G++ + CGG DLYK+T EP +EYVGC++D E RL+ D + + MT +CR +CEE DA +YATQYG+EC+CG S D +DY+ HG+G+C C+GD ACG G+ AF+L+KF DG+ EP P P
Sbjct: 9 EGYSYVGCFADSKDDRVFEYMKTSPT-------MTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSDGVCDCECGGEATDICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQTVCRTYCEERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYKHESFQPFLAVTLVPGGFDAFNLFKF--DGVAEPVAPTP 237
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Match: D7FXK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK6_ECTSI) HSP 1 Score: 171 bits (432), Expect = 1.770e-42 Identity = 86/199 (43.22%), Postives = 115/199 (57.79%), Query Frame = 3
Query: 264 YEHLGCYVDNGMVNSRPNLPLVMEEMTNEMCYDRCHELGAFFMGTQKGNECRCSREEDLDYSSF------EFGVCDAPCAGDSAETCGGQLTLDLYKLTSAEEPDHEEYVGCWSDTNESRLMEDML-VDEGMTTDMCRDHCEETDAVYYATQYGNECFCGYSSDPEDYETHGQGTCHMHCAGDSGSACGGYWAFSLYKF 839
YEH+GC+ DN +L + MT+ MC + C A +M Q G EC CSR +LDYS + +CD C G AETCGG DLYKL D EYVGC++D E R + + + + MT D+CR +CE + +YATQYG+EC+CG + D E+Y+ HG G C C GD ACGGY+AFSL+++
Sbjct: 314 YEHIGCFADNKTDRVLGHL-MKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSGTDKGDADLCDLSCYGCDAETCGGLYAFDLYKLDGPMPSDSREYVGCFADDQEDRALANKIKFQDNMTQDVCRVYCERFGSSFYATQYGDECWCGATDDVEEYKRHGDGECIAGCFGDPAIACGGYYAFSLFEY 511
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Match: D8LED9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED9_ECTSI) HSP 1 Score: 166 bits (420), Expect = 9.590e-41 Identity = 83/195 (42.56%), Postives = 114/195 (58.46%), Query Frame = 3
Query: 261 SYEHLGCYVDNGMVNSRPNLPLVMEEMTNEMCYDRCHELGAFFMGTQKGNECRCSREEDLDYSSFEFGVCDAPCAGDSAETCGGQLTLDLYKLTSAEEPDHEEYVGCWSDTNESRLMEDMLVDE-GMTTDMCRDHCEETDAVYYATQYGNECFCGYSSDPEDYETHGQGTCHMHCAGDSGSACGGYWAFSLYKFG 842
SY ++GC+ DN + MT +C + C E A +M TQ G EC CS + + +Y GVCD C GD A+ CGG DLYK+T EP +EYVGC++D E ++ + + MT +CR +CE+ DA +YATQ G EC+CG S + EDY G+G+C C+GD ACGG+ AF+L+KFG
Sbjct: 399 SYSYVGCFADNKHDRVFEYMRTSFT-MTTAVCLEYCLERRATYMATQYGIECWCSVDAETEYDRHSDGVCDHACGGDEADYCGGFDAFDLYKITEPREPTGDEYVGCFADNPEDWVLGGEIKSQPDMTQAVCRTYCEDLDANFYATQNGEECWCGMSEEEEDYTRSGRGSCLAGCSGDPAVACGGFNAFNLFKFG 592
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Match: A0A6H5JLD0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD0_9PHAE) HSP 1 Score: 151 bits (382), Expect = 4.490e-39 Identity = 82/186 (44.09%), Postives = 110/186 (59.14%), Query Frame = 3
Query: 348 EMCYDRCHELGAFFMGTQKGNECRCSREEDLDY---SSFEFGVCDAPCAGDSAETCGG------------QLTL---DLYKLTSAEEPDHE----EYVGCWSDTNESRLMEDMLVDE-GMTTDMCRDHCEETDAVYYATQYGNECFCGYSSDPEDYETHGQGTCHMHCAGDSGSACGGYWAFSLYK 836
+MCY+ CH GA +M TQ G EC CS + DLDY S G+C C GD+ T +L L DLYK+ +E + EYVGC++D E RL+ + + + MT +CR +CE DA +YATQYG+EC+CG S+D EDY+ HG G+C M C+GDS + CGG+ AF+LYK
Sbjct: 9 QMCYEHCHSEGAAYMATQFGFECLCSHDADLDYARHSEGTDGLCMTECEGDTLPTSTSWRGRSSRRNVCLELALLFPDLYKIAEPKEVEXXXXXXEYVGCFADDPEDRLLGNEIKHQPDMTQVVCRVYCEGYDAQFYATQYGDECWCGMSNDEEDYKRHGSGSCLMECSGDSATVCGGFNAFNLYK 194
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Match: A0A6H5JN72_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN72_9PHAE) HSP 1 Score: 159 bits (403), Expect = 4.100e-38 Identity = 84/220 (38.18%), Postives = 122/220 (55.45%), Query Frame = 3
Query: 258 ESYEHLGCYVDNGMVNSRPNLPLVMEEMTNEMCYDRCHELGAFFMGTQKGNECRCSREEDLDYSSF----------EFGVCDAPCAGDSAE----TCGGQLTLD------------LYKLTSAEEPDHEEYVGCWSDTNESRLMEDML-VDEGMTTDMCRDHCEETDAVYYATQYGNECFCGYSSDPEDYETHGQGTCHMHCAGDSGSACGGYWAFSLYK 836
E+Y H+GC+ DN + + MT MCY+ C + A +M TQ G EC CS + DLDY+ ++G+C C GD +C + L+ LYK+T EP+ EEYVGC++D + RL+++ + MT +CR +CE A +YATQYG+EC+CG S D EDY+ HG G+C C+GD +ACGG+ +F+L+K
Sbjct: 449 EAYTHVGCFSDNKEDRVLEAM-ITSSAMTGAMCYEHCVDRRATYMATQYGFECWCSHDSDLDYARHSDDLERVDGRDYGLCGTRCEGDKVRILHGSCRQREALENHAMGEIRNLHYLYKITEPTEPEGEEYVGCFADDGDDRLLKNEIKYQPDMTQAVCRTYCEGFGAHFYATQYGDECWCGTSDDKEDYKRHGHGSCVAQCSGDPTTACGGFDSFNLFK 667 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1422.2492.1 >prot_E-siliculosus-1a_F_contig1422.2492.1 ID=prot_E-siliculosus-1a_F_contig1422.2492.1|Name=mRNA_E-siliculosus-1a_F_contig1422.2492.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=492bp MTRLAAALLVCATPVASLETSLRGAEVAAAAGGARRGLSGSSYESYEHLGback to top mRNA from alignment at E-siliculosus-1a_F_contig1422:22856..28639- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1422.2492.1 ID=mRNA_E-siliculosus-1a_F_contig1422.2492.1|Name=mRNA_E-siliculosus-1a_F_contig1422.2492.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5784bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1422:22856..28639- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1422:22856..28639- >mRNA_E-siliculosus-1a_F_contig1422.2492.1 ID=mRNA_E-siliculosus-1a_F_contig1422.2492.1|Name=mRNA_E-siliculosus-1a_F_contig1422.2492.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2952bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1422:22856..28639- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |