mRNA_E-siliculosus-1a_F_contig14218.2487.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14218.2487.1
Unique NamemRNA_E-siliculosus-1a_F_contig14218.2487.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Match: A0A0F9YCL7_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9YCL7_9ZZZZ)

HSP 1 Score: 360 bits (925), Expect = 1.900e-120
Identity = 219/235 (93.19%), Postives = 227/235 (96.60%), Query Frame = 1 
Query:  424 ALTFIAWQGWQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLGXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVDRTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQELKDLVVIRHHDEALEALVTPEQESY 1128
            ALTFIAWQGWQRLESQQQRI++LAQQAEGSATQQAVSDLEARF+SGEAERDEALQSNL XXXXXXXXXXXXXXXXXXXXXXX   EQ+TD+RDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALT+VR EIASELAALDAVP+VDRTG+YLALNAQQERISGLR SQEIEERAVTSGIEQPPTG FQ QLARFGQELKDLVVIRHHDEALEALVTPEQESY
Sbjct:    7 ALTFIAWQGWQRLESQQQRINELAQQAEGSATQQAVSDLEARFDSGEAERDEALQSNLDXXXXXXXXXXXXXXXXXXXXXXXLSQEQETDDRDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTTVRGEIASELAALDAVPRVDRTGLYLALNAQQERISGLRLSQEIEERAVTSGIEQPPTGTFQRQLARFGQELKDLVVIRHHDEALEALVTPEQESY 241
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BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Match: UPI00201F8D54 (uroporphyrinogen-III C-methyltransferase n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201F8D54)

HSP 1 Score: 346 bits (887), Expect = 1.310e-112
Identity = 198/265 (74.72%), Postives = 216/265 (81.51%), Query Frame = 1 
Query:  334 TPPPTTTSRHGXXXXXXXXXXXXXXXXXXXALTFIAWQGWQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLGXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVDRTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQELKDLVVIRHHDEALEALVTPEQESY 1128
            TPPP+T +R G                   ALT +AWQGWQRL+SQQQRID+LA+QAE SATQQAV+DLE+R +S E E  + L++ L      XXXXXXXXXX           EQDTDERDWLHAEAAYLLRLANQRLQLEGDVEG+AALLRTADARLVDADNPALTSVRREIASELAALDAVP+VDRTGIYLALNAQQERISGLR SQ+IEERAVTSGIEQPPTGNFQ QLARFG+ELKDL+VIRHHDEALEAL+TPEQESY
Sbjct:  126 TPPPSTPTRGGGSNSKSGVLAIVLIIILAVALTVVAWQGWQRLDSQQQRIDELARQAEVSATQQAVNDLESRIDSSETEHSQTLENTLSELRGEXXXXXXXXXXTLDQVLAQLSQEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGAAALLRTADARLVDADNPALTSVRREIASELAALDAVPRVDRTGIYLALNAQQERISGLRLSQDIEERAVTSGIEQPPTGNFQRQLARFGEELKDLIVIRHHDEALEALITPEQESY 390
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BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Match: UPI001F0FDBE3 (uroporphyrinogen-III C-methyltransferase n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001F0FDBE3)

HSP 1 Score: 347 bits (889), Expect = 4.090e-112
Identity = 206/231 (89.18%), Postives = 221/231 (95.67%), Query Frame = 1 
Query:  436 IAWQGWQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLGXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVDRTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQELKDLVVIRHHDEALEALVTPEQESY 1128
            +AWQGWQRL++QQQRID+LAQQAEGSA+QQAVSDLE+R +SGEAERDEA+QS +G XXXXXXXXXXXXXXXXXXXXXX   EQDTDER+WLHAEAAYLLRLANQRLQLEGDVEG+AALLRTADARLVDADNPALT+VR EIASELAALDAVPQ+DRTGIYLALNAQQERISGLR SQEIEE+AVTSGIEQPPTG FQ QLARFGQELKDLVVIRHHDEALEAL+TPEQESY
Sbjct:  221 VAWQGWQRLDNQQQRIDELAQQAEGSASQQAVSDLESRLDSGEAERDEAIQSTMGEXXXXXXXXXXXXXXXXXXXXXXLSQEQDTDEREWLHAEAAYLLRLANQRLQLEGDVEGAAALLRTADARLVDADNPALTTVRSEIASELAALDAVPQIDRTGIYLALNAQQERISGLRLSQEIEEQAVTSGIEQPPTGTFQRQLARFGQELKDLVVIRHHDEALEALITPEQESY 451
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BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Match: A0A2M9TCM1_9GAMM (Uncharacterized protein n=3 Tax=Halomonas TaxID=2745 RepID=A0A2M9TCM1_9GAMM)

HSP 1 Score: 333 bits (853), Expect = 1.520e-109
Identity = 200/235 (85.11%), Postives = 213/235 (90.64%), Query Frame = 1 
Query:  424 ALTFIAWQGWQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLGXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVDRTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQELKDLVVIRHHDEALEALVTPEQESY 1128
            AL  +AWQGWQRL+SQQQRID+LAQQ + SATQ +VSDLEAR ESGEAER +A      XXXXXXXXXXXXXXXXXXXX      EQ+TDERDWLHAEAAYLLRLANQRLQLEGDV+G+AALLRTADARLVDADNPALTSVRREIASELAALDAVP+VDRTGIYLALNAQQERI+GLR SQEIEERAVTSGIEQPPTG FQ QLARFG+ELKDLVVIRHHDEALEAL+TPEQESY
Sbjct:    7 ALGIVAWQGWQRLDSQQQRIDELAQQTQNSATQASVSDLEARLESGEAERSQAXXXXXXXXXXXXXXXXXXXXXXXXXXLAQLSQEQETDERDWLHAEAAYLLRLANQRLQLEGDVDGAAALLRTADARLVDADNPALTSVRREIASELAALDAVPRVDRTGIYLALNAQQERIAGLRLSQEIEERAVTSGIEQPPTGTFQRQLARFGEELKDLVVIRHHDEALEALITPEQESY 241
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BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Match: A0A117KIS8_9GAMM (Uroporphyrinogen III C-methyltransferase n=1 Tax=Halomonas sp. 54_146 TaxID=1635257 RepID=A0A117KIS8_9GAMM)

HSP 1 Score: 337 bits (863), Expect = 2.940e-109
Identity = 209/235 (88.94%), Postives = 221/235 (94.04%), Query Frame = 1 
Query:  424 ALTFIAWQGWQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLGXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVDRTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQELKDLVVIRHHDEALEALVTPEQESY 1128
            AL F+AWQGWQRLESQQQRID LAQQAEG+A+QQA++DL AR +SGEA+RDEALQS   XXXXXXXXXXXXXXXXXXXXXXXXXX QDTDERDWLHAEAAYLLRLANQRLQLEGDVEG+AALLRTADARLVDADNPALT+VRREIASELAALDAVP+VDRTGIYLALNAQQER+S LR SQEIEERAVTS IEQPPTG FQ QLARFGQELKDLVVIR HDEALEAL+TPEQESY
Sbjct:  136 ALIFVAWQGWQRLESQQQRIDALAQQAEGNASQQALNDLAARLDSGEAQRDEALQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGAAALLRTADARLVDADNPALTTVRREIASELAALDAVPRVDRTGIYLALNAQQERLSSLRLSQEIEERAVTSSIEQPPTGTFQRQLARFGQELKDLVVIRQHDEALEALITPEQESY 370
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BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Match: A0A0D6E3G9_9GAMM (Uroporphyrinogen III C-methyltransferase n=18 Tax=Halomonadaceae TaxID=28256 RepID=A0A0D6E3G9_9GAMM)

HSP 1 Score: 331 bits (849), Expect = 6.120e-109
Identity = 201/235 (85.53%), Postives = 221/235 (94.04%), Query Frame = 1 
Query:  424 ALTFIAWQGWQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLGXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVDRTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQELKDLVVIRHHDEALEALVTPEQESY 1128
            AL F+AWQGWQRL+SQQQR+D+LAQQAEGSA+QQAVSDLE+R +SGEAERDEALQ+   XXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDER+WLHAEAAYLLRLANQRLQLEGDV+G++ALLRTADARLVDADNPALT VR  IA+ELAALDAVPQ+DRTG+YLALNAQQERIS LR SQEIE +AVTS IE+PPTG FQ QLARFG+ELKDLVV+RHHDEALEAL+TPEQESY
Sbjct:    7 ALAFVAWQGWQRLDSQQQRLDELAQQAEGSASQQAVSDLESRLDSGEAERDEALQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDEREWLHAEAAYLLRLANQRLQLEGDVDGASALLRTADARLVDADNPALTPVREAIANELAALDAVPQIDRTGLYLALNAQQERISSLRLSQEIEAQAVTSSIEEPPTGTFQRQLARFGEELKDLVVVRHHDEALEALITPEQESY 241
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BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Match: A0A4R7YH77_9GAMM (Uroporphyrin-3 C-methyltransferase n=16 Tax=Halomonadaceae TaxID=28256 RepID=A0A4R7YH77_9GAMM)

HSP 1 Score: 336 bits (862), Expect = 1.010e-108
Identity = 201/235 (85.53%), Postives = 218/235 (92.77%), Query Frame = 1 
Query:  424 ALTFIAWQGWQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLGXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVDRTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQELKDLVVIRHHDEALEALVTPEQESY 1128
            AL F+AWQGWQRL++QQQR+D+LAQQAEGSA+QQAVSDLE+R +SGEAERDEALQS   XXXXXXXXXXXXXXXXXXXXXX    EQDTDER+WLHAEAAYLLRLANQRLQLEGDV+G+AALLRTADARLVDADNPALT VR  IA+ELAALDAVPQVDRTG+YLALNAQQERIS LR SQEIEE+AVTS IEQPPTG FQ QLARFG+ELKDLVV+RHHDEALEAL+TPEQESY
Sbjct:  165 ALAFVAWQGWQRLDNQQQRLDELAQQAEGSASQQAVSDLESRLDSGEAERDEALQSXXXXXXXXXXXXXXXXXXXXXXXXXQLSQEQDTDEREWLHAEAAYLLRLANQRLQLEGDVDGAAALLRTADARLVDADNPALTPVREAIANELAALDAVPQVDRTGLYLALNAQQERISSLRLSQEIEEQAVTSSIEQPPTGTFQRQLARFGEELKDLVVVRHHDEALEALITPEQESY 399
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BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Match: A0A6I7N1G5_HALSX (Uncharacterized protein n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A6I7N1G5_HALSX)

HSP 1 Score: 330 bits (846), Expect = 1.740e-108
Identity = 205/235 (87.23%), Postives = 217/235 (92.34%), Query Frame = 1 
Query:  424 ALTFIAWQGWQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLGXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVDRTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQELKDLVVIRHHDEALEALVTPEQESY 1128
            AL  +AWQGWQRLE+QQQRID+LAQQ E SA+QQAVSDLE+R +SGEAERDEAL     XXXXXXXXXXXXXXXXXXXXXXXXXX QD DERDWLHAEAAYLLRLANQRLQLEGDVEG++ALLRTADARLVDADNPALTSVRR IASELAALDAVPQVDRTG+Y+ALNAQQERISGLR SQEIEERAVTS IEQPPTG FQ QLARFGQELKDLVVIR HDEA+EAL+TPEQESY
Sbjct:    7 ALGLVAWQGWQRLENQQQRIDELAQQTENSASQQAVSDLESRLDSGEAERDEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDADERDWLHAEAAYLLRLANQRLQLEGDVEGASALLRTADARLVDADNPALTSVRRAIASELAALDAVPQVDRTGLYMALNAQQERISGLRLSQEIEERAVTSSIEQPPTGTFQRQLARFGQELKDLVVIRQHDEAMEALITPEQESY 241
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Match: UPI001F0A417E (uroporphyrinogen-III C-methyltransferase n=2 Tax=Halomonas TaxID=2745 RepID=UPI001F0A417E)

HSP 1 Score: 330 bits (846), Expect = 5.690e-108
Identity = 203/235 (86.38%), Postives = 219/235 (93.19%), Query Frame = 1 
Query:  424 ALTFIAWQGWQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLGXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVDRTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQELKDLVVIRHHDEALEALVTPEQESY 1128
            AL FIAWQGWQRLESQQQR+D++AQQAEGSA+QQAVSDLE+R +SGEAERDEAL     XXXXXXXXXXXXXXXXXXXXXXXXXX QDTDER+WLHAEAAYLLRLANQRLQLEGDV+G+AALLRTADARLVDADNPALT VR  IA+ELAALDAVPQVDRTG+YLALNAQQERIS LR SQEIEE+AVTS IE+PPTG FQ QLARFG+ELKDLVV+RHHDEALEAL+TPEQESY
Sbjct:   43 ALAFIAWQGWQRLESQQQRLDEVAQQAEGSASQQAVSDLESRLDSGEAERDEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDTDEREWLHAEAAYLLRLANQRLQLEGDVDGAAALLRTADARLVDADNPALTPVREAIANELAALDAVPQVDRTGLYLALNAQQERISSLRLSQEIEEQAVTSSIEEPPTGTFQRQLARFGEELKDLVVVRHHDEALEALITPEQESY 277
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BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Match: UPI001F161036 (uroporphyrinogen-III C-methyltransferase n=2 Tax=Halomonas populi TaxID=2498858 RepID=UPI001F161036)

HSP 1 Score: 328 bits (841), Expect = 1.170e-107
Identity = 187/235 (79.57%), Postives = 207/235 (88.09%), Query Frame = 1 
Query:  424 ALTFIAWQGWQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLGXXXXXXXXXXXXXXXXXXXXXXXXXXEQDTDERDWLHAEAAYLLRLANQRLQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVDRTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQELKDLVVIRHHDEALEALVTPEQESY 1128
            AL  +AWQGWQRL+SQQQRI++L+QQAEGSA+QQAVSDLE+RFES E+ER +AL+  L    XXXXXXXXXXXXX           QDTD+RDWLHAEAAYLLRLANQRLQLEGDV+G+AALLRTADARL DADNPALT VRREIASELAALD VP+VDRTG+YLALNAQQER++GLR SQEIEERAVTSGIEQPPTG FQ QLARFG+ELKDLV+IRHHDEA+E LVTPEQESY
Sbjct:    9 ALIIVAWQGWQRLDSQQQRINELSQQAEGSASQQAVSDLESRFESSESERAQALEGTLEELRXXXXXXXXXXXXXLDDVLNQLSQAQDTDDRDWLHAEAAYLLRLANQRLQLEGDVDGAAALLRTADARLADADNPALTPVRREIASELAALDGVPRVDRTGLYLALNAQQERVAGLRLSQEIEERAVTSGIEQPPTGTFQRQLARFGEELKDLVMIRHHDEAMETLVTPEQESY 243
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14218.2487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9YCL7_9ZZZZ1.900e-12093.19Uncharacterized protein n=1 Tax=marine sediment me... [more]
UPI00201F8D541.310e-11274.72uroporphyrinogen-III C-methyltransferase n=1 Tax=H... [more]
UPI001F0FDBE34.090e-11289.18uroporphyrinogen-III C-methyltransferase n=1 Tax=H... [more]
A0A2M9TCM1_9GAMM1.520e-10985.11Uncharacterized protein n=3 Tax=Halomonas TaxID=27... [more]
A0A117KIS8_9GAMM2.940e-10988.94Uroporphyrinogen III C-methyltransferase n=1 Tax=H... [more]
A0A0D6E3G9_9GAMM6.120e-10985.53Uroporphyrinogen III C-methyltransferase n=18 Tax=... [more]
A0A4R7YH77_9GAMM1.010e-10885.53Uroporphyrin-3 C-methyltransferase n=16 Tax=Halomo... [more]
A0A6I7N1G5_HALSX1.740e-10887.23Uncharacterized protein n=1 Tax=Halomonas sp. TaxI... [more]
UPI001F0A417E5.690e-10886.38uroporphyrinogen-III C-methyltransferase n=2 Tax=H... [more]
UPI001F1610361.170e-10779.57uroporphyrinogen-III C-methyltransferase n=2 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14218contigE-siliculosus-1a_F_contig14218:23..1150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1128
Model size1128
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
BiGG ReactioniAF1260.b3803,iBWG_1329.BWG_3482,iECDH1ME8569_1439.ECDH1ME8569_3682,iECUMN_1333.ECUMN_4327,iECs_1301.ECs4733,iEcDH1_1363.EcDH1_4176,iJO1366.b3803,iJR904.b3803,iPC815.YPO3851,iUMN146_1321.UM146_19140,iY75_1357.Y75_RS18060,iZ_1308.Z5317
COG Functional cat.H
EC2.1.1.107,4.2.1.75
EggNOG OGs1MY3A@1224,1RNJY@1236,1XH3M@135619,COG2959@1,COG2959@2
EggNOG free text desc.enzyme of heme biosynthesis
KEGG ModuleM00121
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ReactionR03165,R03194
KEGG koko:K02496,ko:K06313,ko:K13543
KEGG rclassRC00003,RC00871,RC01861
Preferred namehemX
Seed eggNOG ortholog1504981.KO116_1202
Seed ortholog evalue2.2e-90
Seed ortholog score339.3
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927936.7598798-CDS-E-siliculosus-1a_F_contig14218:22..11501622927936.7598798-CDS-E-siliculosus-1a_F_contig14218:22..1150Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14218 23..1150 +
1696318744.4934762-CDS-E-siliculosus-1a_F_contig14218:22..11501696318744.4934762-CDS-E-siliculosus-1a_F_contig14218:22..1150Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14218 23..1150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14218.2487.1prot_E-siliculosus-1a_F_contig14218.2487.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14218 23..1150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14218.2487.1

>prot_E-siliculosus-1a_F_contig14218.2487.1 ID=prot_E-siliculosus-1a_F_contig14218.2487.1|Name=mRNA_E-siliculosus-1a_F_contig14218.2487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=376bp
SSSTPPASDSAWGDAAKTSSSTPPSHSGARNSRSRRRGKSTNSTSSPASS
TSTDSTTASANPSDSTLSIPKDSTSETAKPLTSTPSSTSKPAADTSTPGT
SAPTSDGGSKDTPPPTTTSRHGNGGGKGSGLAIALVIILAIALTFIAWQG
WQRLESQQQRIDDLAQQAEGSATQQAVSDLEARFESGEAERDEALQSNLG
ELRNEFDSYRSEVDDTLGQVLDQLSQEQDTDERDWLHAEAAYLLRLANQR
LQLEGDVEGSAALLRTADARLVDADNPALTSVRREIASELAALDAVPQVD
RTGIYLALNAQQERISGLRFSQEIEERAVTSGIEQPPTGNFQSQLARFGQ
ELKDLVVIRHHDEALEALVTPEQESY
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mRNA from alignment at E-siliculosus-1a_F_contig14218:23..1150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14218.2487.1 ID=mRNA_E-siliculosus-1a_F_contig14218.2487.1|Name=mRNA_E-siliculosus-1a_F_contig14218.2487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1128bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14218:23..1150+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCCAGCAGCACGCCACCTGCTTCAGACAGCGCATGGGGTGATGCCGCGAA
GACATCGAGTTCCACGCCGCCATCTCATAGTGGTGCTAGAAACAGCCGTT
CACGGCGGCGTGGCAAAAGTACTAATAGCACCAGCTCACCCGCTAGCTCT
ACCAGCACAGATAGCACCACCGCTTCGGCAAATCCAAGCGACAGCACGTT
AAGCATTCCTAAAGATTCAACCAGTGAAACGGCGAAGCCCTTGACCAGCA
CTCCCTCTTCAACATCAAAGCCTGCAGCTGATACATCAACACCCGGCACA
TCAGCGCCTACGTCTGACGGGGGTTCAAAAGATACGCCGCCCCCCACCAC
GACCAGCCGACATGGCAATGGTGGTGGTAAAGGCAGCGGCTTGGCCATTG
CCCTGGTGATTATCCTTGCGATTGCGCTAACGTTTATTGCTTGGCAAGGC
TGGCAACGGTTAGAGAGCCAGCAGCAACGTATCGATGACTTGGCCCAACA
GGCTGAAGGTAGCGCTACCCAACAAGCAGTGAGCGACCTTGAGGCACGCT
TTGAAAGTGGCGAAGCTGAACGCGATGAGGCCTTGCAAAGCAACTTGGGC
GAGCTACGCAATGAATTTGACAGCTACCGTAGCGAGGTTGATGACACCCT
AGGCCAGGTGCTTGATCAGCTTTCCCAAGAGCAGGATACCGATGAGCGCG
ACTGGCTGCATGCCGAAGCCGCTTATCTGCTGCGTTTAGCTAATCAACGC
CTGCAGTTAGAAGGCGATGTTGAAGGGTCAGCTGCGCTGCTGCGCACCGC
CGATGCTCGTCTAGTCGACGCTGATAACCCTGCGCTGACGTCTGTACGCC
GCGAAATTGCCAGTGAGTTAGCAGCGCTTGACGCTGTGCCTCAGGTTGAC
CGCACCGGCATCTACCTAGCGTTGAATGCCCAGCAAGAGCGTATTTCTGG
CCTGCGTTTTTCGCAAGAAATTGAAGAGCGCGCGGTGACCTCCGGTATTG
AACAGCCGCCTACCGGCAACTTCCAGAGCCAATTGGCCCGCTTCGGTCAG
GAGCTCAAAGACCTGGTGGTAATTCGTCATCATGATGAAGCGCTAGAAGC
ATTAGTCACGCCAGAGCAAGAGTCTTAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14218:23..1150+

>mRNA_E-siliculosus-1a_F_contig14218.2487.1 ID=mRNA_E-siliculosus-1a_F_contig14218.2487.1|Name=mRNA_E-siliculosus-1a_F_contig14218.2487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2256bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14218:23..1150+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCCAGCAGCACGCCACCTGCTTCAGACAGCGCATGGGGTGATGCCGCGAA
GACATCGAGTTCCACGCCGCCATCTCATAGTGGTGCTAGAAACAGCCGTT
CACGGCGGCGTGGCAAAAGTACTAATAGCACCAGCTCACCCGCTAGCTCT
ACCAGCACAGATAGCACCACCGCTTCGGCAAATCCAAGCGACAGCACGTT
AAGCATTCCTAAAGATTCAACCAGTGAAACGGCGAAGCCCTTGACCAGCA
CTCCCTCTTCAACATCAAAGCCTGCAGCTGATACATCAACACCCGGCACA
TCAGCGCCTACGTCTGACGGGGGTTCAAAAGATACGCCGCCCCCCACCAC
GACCAGCCGACATGGCAATGGTGGTGGTAAAGGCAGCGGCTTGGCCATTG
CCCTGGTGATTATCCTTGCGATTGCGCTAACGTTTATTGCTTGGCAAGGC
TGGCAACGGTTAGAGAGCCAGCAGCAACGTATCGATGACTTGGCCCAACA
GGCTGAAGGTAGCGCTACCCAACAAGCAGTGAGCGACCTTGAGGCACGCT
TTGAAAGTGGCGAAGCTGAACGCGATGAGGCCTTGCAAAGCAACTTGGGC
GAGCTACGCAATGAATTTGACAGCTACCGTAGCGAGGTTGATGACACCCT
AGGCCAGGTGCTTGATCAGCTTTCCCAAGAGCAGGATACCGATGAGCGCG
ACTGGCTGCATGCCGAAGCCGCTTATCTGCTGCGTTTAGCTAATCAACGC
CTGCAGTTAGAAGGCGATGTTGAAGGGTCAGCTGCGCTGCTGCGCACCGC
CGATGCTCGTCTAGTCGACGCTGATAACCCTGCGCTGACGTCTGTACGCC
GCGAAATTGCCAGTGAGTTAGCAGCGCTTGACGCTGTGCCTCAGGTTGAC
CGCACCGGCATCTACCTAGCGTTGAATGCCCAGCAAGAGCGTATTTCTGG
CCTGCGTTTTTCGCAAGAAATTGAAGAGCGCGCGGTGACCTCCGGTATTG
AACAGCCGCCTACCGGCAACTTCCAGAGCCAATTGGCCCGCTTCGGTCAG
GAGCTCAAAGACCTGGTGGTAATTCGTCATCATGATGAAGCGCTAGAAGC
ATTAGTCACGCCAGAGCAAGAGTCTTACTCCAGCAGCACGCCACCTGCTT
CAGACAGCGCATGGGGTGATGCCGCGAAGACATCGAGTTCCACGCCGCCA
TCTCATAGTGGTGCTAGAAACAGCCGTTCACGGCGGCGTGGCAAAAGTAC
TAATAGCACCAGCTCACCCGCTAGCTCTACCAGCACAGATAGCACCACCG
CTTCGGCAAATCCAAGCGACAGCACGTTAAGCATTCCTAAAGATTCAACC
AGTGAAACGGCGAAGCCCTTGACCAGCACTCCCTCTTCAACATCAAAGCC
TGCAGCTGATACATCAACACCCGGCACATCAGCGCCTACGTCTGACGGGG
GTTCAAAAGATACGCCGCCCCCCACCACGACCAGCCGACATGGCAATGGT
GGTGGTAAAGGCAGCGGCTTGGCCATTGCCCTGGTGATTATCCTTGCGAT
TGCGCTAACGTTTATTGCTTGGCAAGGCTGGCAACGGTTAGAGAGCCAGC
AGCAACGTATCGATGACTTGGCCCAACAGGCTGAAGGTAGCGCTACCCAA
CAAGCAGTGAGCGACCTTGAGGCACGCTTTGAAAGTGGCGAAGCTGAACG
CGATGAGGCCTTGCAAAGCAACTTGGGCGAGCTACGCAATGAATTTGACA
GCTACCGTAGCGAGGTTGATGACACCCTAGGCCAGGTGCTTGATCAGCTT
TCCCAAGAGCAGGATACCGATGAGCGCGACTGGCTGCATGCCGAAGCCGC
TTATCTGCTGCGTTTAGCTAATCAACGCCTGCAGTTAGAAGGCGATGTTG
AAGGGTCAGCTGCGCTGCTGCGCACCGCCGATGCTCGTCTAGTCGACGCT
GATAACCCTGCGCTGACGTCTGTACGCCGCGAAATTGCCAGTGAGTTAGC
AGCGCTTGACGCTGTGCCTCAGGTTGACCGCACCGGCATCTACCTAGCGT
TGAATGCCCAGCAAGAGCGTATTTCTGGCCTGCGTTTTTCGCAAGAAATT
GAAGAGCGCGCGGTGACCTCCGGTATTGAACAGCCGCCTACCGGCAACTT
CCAGAGCCAATTGGCCCGCTTCGGTCAGGAGCTCAAAGACCTGGTGGTAA
TTCGTCATCATGATGAAGCGCTAGAAGCATTAGTCACGCCAGAGCAAGAG
TCTTAC
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