mRNA_E-siliculosus-1a_F_contig1418.2471.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1418.2471.1
Unique NamemRNA_E-siliculosus-1a_F_contig1418.2471.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Match: A0A6H5L6W1_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6W1_9PHAE)

HSP 1 Score: 427 bits (1098), Expect = 9.580e-145
Identity = 197/217 (90.78%), Postives = 208/217 (95.85%), Query Frame = 1
Query:    1 VPAFVYSTSHIPEARRGSEYDGLMYVTDWLPTLAAGAGLKLSGSAGPLDGVNQWEHIVGSAAAVDGGRPRTELLFNYDPYRLLPNSNQVYDTGYAQGAFRSGKYKMMFNVSCQGWYTFDGDMLEEDPLTDLSKVCGGTCNDEGKCSDETTSDYLFDLDQDPRESNNLVDKLPDVAQEMRDRWYEVTFREYTDTVYEPLDLRAYDVWTENNWWMIPWL 651
            VPAFVYSTSHIPEARRGSEYDGLM+VTDWLPTLAAGAGL+LSGSAGPLDGVN WEHIVGSA AVDG RPRTELL+NYDPYRLLPNSNQVYDTG+AQGAFRSGKYKM+FNVSC GWYTFDGD+LE D LT+LSKVCGGTCND G+CSDETTSDYLFDLDQDPRESNNLVD LPDVAQEMRDRWYEVTFREY+DTVYEPLDL+AYDVW +NNWWMIPWL
Sbjct:  417 VPAFVYSTSHIPEARRGSEYDGLMHVTDWLPTLAAGAGLELSGSAGPLDGVNHWEHIVGSATAVDGDRPRTELLYNYDPYRLLPNSNQVYDTGHAQGAFRSGKYKMIFNVSCHGWYTFDGDILEADHLTNLSKVCGGTCNDGGECSDETTSDYLFDLDQDPRESNNLVDDLPDVAQEMRDRWYEVTFREYSDTVYEPLDLKAYDVWADNNWWMIPWL 633          
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Match: A0A6H5JIE9_9PHAE (Sulfatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIE9_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 1.410e-75
Identity = 123/233 (52.79%), Postives = 161/233 (69.10%), Query Frame = 1
Query:    1 VPAFVYSTSHIPEARRGSEYDGLMYVTDWLPTLAAGAGLKLSGSAGPLDGVNQWEHIVGSAAAVDGGRPRTELLFNYDPYRL-LPNSNQVYDTGY--AQGAFRSGKYKMMFNVSCQGWYTFDGDMLEEDPLTDLSKVCGGT-CNDEGK-CSDETTSDYLFDLDQDPRESNNLVDKLPDVAQEMRDRWYEVTFREYTDTVYEPLDLRAYDVWTENNWWMIPWLTSSRQRSPEDS 684
            VP+FVYS SHIPE R G+EYDGLM+VTDWLPT+A  A L L G AGP DGV+QW  I   AA  + G  R E+++N+DPY L + +S  + D  +  AQGAFRSGKYK + NV C GWYTFD  +L EDPLT+L+  C G+ C+D G+ C+   ++DYLFDL+ DPRE +NL+  LPDVA  MR+RW EV F E+ ++ YE +D ++Y VW   NWWM+PW       +P+ +
Sbjct:  487 VPSFVYSKSHIPEERWGTEYDGLMHVTDWLPTIAGAAELDLDGGAGPFDGVDQWPLITSVAAEAEFGSARDEMVYNFDPYILWIDSSESIGDPEFNLAQGAFRSGKYKYLANVWCTGWYTFDKHILAEDPLTNLTLACDGSPCSDCGQGCTSYNSTDYLFDLEADPREEHNLIYDLPDVAHNMRERWVEVAFIEWGNSSYENIDHQSYSVWASFNWWMVPWWHLVGSSAPDST 719          
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Match: A0A6H5K4V1_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V1_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 3.440e-51
Identity = 101/229 (44.10%), Postives = 137/229 (59.83%), Query Frame = 1
Query:    1 VPAFVYSTSHIPEARRGSEYDGLMYVTDWLPTLAAGAGLKLSGSAGPLDGVNQWEHI----VGSAAAVDGGR-PRTELLFNYDPYRLLPNSNQVYDTGYAQGAFRSGKYKMMFNVSCQGWYTFDGDMLEEDPLTDLSKVCGG---TCND-----EGKCSDETTSDYLFDLDQDPRESNNLVDKLPDVAQEMRDRWYEVTFREYTDTVYEPLDLRAYDVWTENNWWMIPW 648
            VPAFV+S SH+P    G+ YD L++ TDWLPTLA  AG   SGSAG LDGV+QWE +    VG A   D  + PRTELL+N+D Y L        D G +QGAFRSG +K++ N  C G+Y+ D  ++E D L D    CG     C D     +    D   SD L+++  DPRE ++L D+ P++A+E+R R  EV F ++  +  +P++  +Y VW  NNWWM PW
Sbjct:  516 VPAFVWSKSHLPSHAWGTTYDNLVHSTDWLPTLANIAGGATSGSAGALDGVDQWECLKSNGVGGAGPGDTSKAPRTELLYNWDSYLLASVEELKEDLGLSQGAFRSGDWKLLVNAFCSGYYSHDLAVIESDHLLDSEVSCGVGNMECQDCIDLCQLGSEDYPVSDLLYNVKDDPREEHDLYDQYPEIAKELRKRAEEVVFADWVGSRLKPVNTDSYPVWEANNWWMCPW 744          
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Match: D7G1A6_ECTSI (Formylglycine-dependent sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A6_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 8.980e-50
Identity = 111/275 (40.36%), Postives = 145/275 (52.73%), Query Frame = 1
Query:    1 VPAFVYSTSHIPEARRGSEYDGLMYVTDWLPTLAAGAGLKLSGSAGPLDGVNQWEHIVGS--------------AAAVDGGR-----------------------------------PRTELLFNYDPYRLLPNSNQVYDTGYA-----QGAFRSGKYKMMFNVSCQGWYTFDGDMLEEDPLTDLSKVCG--GTCNDEGKCSDETTSDY---LFDLDQDPRESNNLVDKLPDVAQEMRDRWYEVTFREYTDTVYEPLDLRAYDVWTENNWWMIPW 648
            VPAFVYS SHIPE   G+EY GLM+VTDWLPTLA  A  +L GS G LDGV+ W+HIV +              AAAV+  R                                    R E+L+N+DPY L   +N   D G A     QGAFR GK+K MFN  C G+Y FD   L  D LTD    C   G C+  G      + DY   LFDL+ DPRE NNL ++ P+V + +R R  EV F+E++++ Y+ ++  AY +W + ++WM+PW
Sbjct:  437 VPAFVYSPSHIPEEHWGTEYRGLMHVTDWLPTLADAANFELLGSHGDLDGVSHWKHIVPAPGDDTATVSESPEAAAAVEDNRLKRARTATXXXXXXXXXXXXXXXXSSYGLGEVSYGARREVLYNFDPYVL--GANITDDIGEADFTEVQGAFRQGKWKFMFNSWCSGYYAFDNKTLLADDLTDEDNTCQELGECSQCGANCGSLSIDYTDWLFDLEDDPRELNNLANEHPEVVESLRRRVLEVVFQEFSNSSYKSVNYGAYYIWRKFDYWMVPW 709          
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Match: A0A6H5K238_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K238_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.370e-35
Identity = 92/236 (38.98%), Postives = 112/236 (47.46%), Query Frame = 1
Query:    1 VPAFVYSTSHIPEARRGSEYDGLMYVTDWLPTLAAGAGLKLSGSAGPLDGVNQWEHIV---GSAAAVDGGRP-------------------------------------------------RTELLFNYDPYRLLPNSNQVYDTGYA-----QGAFRSGKYKMMFNVSCQGWYTFDGDMLEEDPLTDLSKVCG--GTCNDEGKCSDETTSDY---LFDLDQDPRESNNLVDKLPDV 522
            VPAFVYS SHIP+   G+EY GLM+VTDWLPTLA  A  +L GS G LDGV+ W+HIV   G   A     P                                                 R+E+L+N DPY L   ++   D G A     QGAFR GK+K MF   C G+Y FD + L  D LTD    C   G C+  G   +    DY   LFDL+ DPRE NNL ++ P+V
Sbjct:   58 VPAFVYSPSHIPDENWGTEYRGLMHVTDWLPTLADAANFELLGSHGDLDGVSHWKHIVHAPGDDTATVSESPEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYGLGEVSYGARSEVLYNSDPYVL--GASITADIGDADFTEVQGAFRQGKWKFMFKSWCSGYYAFDNNTLLADDLTDEDNTCQELGECSQCGANCENLGIDYTDWLFDLEDDPRELNNLANEHPEV 291          
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Match: A0A6H5KZF8_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.880e-30
Identity = 78/222 (35.14%), Postives = 109/222 (49.10%), Query Frame = 1
Query:    1 VPAFVYSTSH--IPEARRGSEYDGLMYVTDWLPTLAAGA-GLKLSGSAGPLDGVNQWEHIVGSAAAVDGGRPRTELLFNYDPYRLLPNSNQVYDTGYAQGAFRSGKYKMMFNVSCQGWYTFDGD--MLEEDPLTDLSKVCGGTCNDEGKCSDETTSDYLFDLDQDPRESNNLVDKLPDVAQEMRDRWYEVTFREYTDTVYEPLDLRAYDVWTENNWWMIPWL 651
            VPAFVYS S   IP   RG++Y G+M+ TDW PTL      L L      L G +QW+ I+G     +GG  RTEL+     Y    +  ++ +    +GA+    +K++    C GW TF  D  ++ E P  DL   C     D   C      D+LF +D DP E+ NL D +P+   EM  R +EV   +     Y+P   +A + W E N WM+ WL
Sbjct:   52 VPAFVYSKSADLIPAEARGTKYSGMMHSTDWTPTLGRVVPDLPLGEMGKELSGFDQWDAIIGGGKG-EGGGVRTELVLGRSSYVFDLDVGEIVNNPSPRGAYIYDGWKIILLERCTGWSTFSQDDPVISEYPGCDLEDACTSCTVD---CGGPELIDFLFHIDTDPYETENLRDSMPEKFAEMVQR-FEVATTDEVVAEYKPAQPQALERWDEYNHWMVAWL 268          
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Match: A0A6H5JFF9_9PHAE (Sulfatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 4.780e-30
Identity = 71/167 (42.51%), Postives = 91/167 (54.49%), Query Frame = 1
Query:    1 VPAFVYSTSHIPEARRGSEYDGLMYVTDWLPTLAAGAGLKLSGSAGPLDGVNQWEHIV---GSAAAVDGGR----------PRTELLFNYDPY-------RLLPNSNQVYDTGYAQGAFRSGKYKMMFNVSCQGWYTFDGDMLEEDPLTDLSKVCGGTCNDEGKCSD 441
            VPA VYS SHIPE RRG +YDGLM+VTDWLPTL A  G  +  S   LDGVN WEHI+    +    +GG           PR E+L+N+DPY       R LP+     D   AQGAFR G++K++F V C G Y  + D    + +   S  C    +D  + +D
Sbjct:  453 VPALVYSPSHIPEERRGGQYDGLMHVTDWLPTLTAATGSSVVESHRNLDGVNHWEHIIDVDSAGCGAEGGSSSRGSNSSYSPRNEMLYNFDPYFMGAERDRPLPDP----DISRAQGAFRQGQWKLLFKVCCLGHYALETDTSFANKMVSKSGTCRHHAHDNQQSAD 615          
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Match: D8LRL9_ECTSI (Formylglycine-dependent sulfatase, C-terminal Formylglycine-dependent sulfatase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL9_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.580e-28
Identity = 71/164 (43.29%), Postives = 91/164 (55.49%), Query Frame = 1
Query:    1 VPAFVYSTSHIPEARRGSEYDGLMYVTDWLPTLAAGAGLKLSGSAGPLDGVNQWEHIVGSAAAVDGGR--------PRTELLFNYDPYRL-------LPNSNQVYDTGYAQGAFRSGKYKMMFNVSCQGWYTFDGDMLEEDPLTDLSKVCGGTCNDEGKCSDET 447
            VPA VYS SHIP+ RRG +YDGLM+VTDWLPTL A  G  +  S   LDGVN WEHI+   +A  G          PR E+L+N+DPY +       LP+     D   AQGAFR GK+K +F V C G Y  + D+   + +   S  C    +D  + +D T
Sbjct:  361 VPALVYSPSHIPKERRGGQYDGLMHVTDWLPTLMAATGSVVE-SHRNLDGVNHWEHIIDVDSAGCGAECGSSSSYSPRNEMLYNFDPYFMGAETYGPLPDP----DFSQAQGAFRQGKWKFLFKVCCLGHYAPETDVSFANKMVSESGTCRHHAHDNEQSADAT 519          
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Match: D7FLS1_ECTSI (Formylglycine-dependent sulfatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS1_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.230e-26
Identity = 79/222 (35.59%), Postives = 107/222 (48.20%), Query Frame = 1
Query:    1 VPAFVYS--TSHIPEARRGSEYDGLMYVTDWLPTLAAGA-GLKLSGSAGPLDGVNQWEHIVGSAAAVDGGRPRTELLFNYDPYRLLPNSNQVYDTGYAQGAFRSGKYKMMFNVSCQGWYTF--DGDMLEEDPLTDLSKVCGGTCNDEGKCSDETTSDYLFDLDQDPRESNNLVDKLPDVAQEMRDRWYEVTFREYTDTVYEPLDLRAYDVWTENNWWMIPWL 651
            VPAFVYS  T  IPE  RG+ Y G+M+ TDW PT  +    L L      L G + W+ I+G     +GG  RTEL+        L  S+ V+D    +         ++ N  C GW TF  D  ++ EDP  DL   C     D   C      D+LF +D DP E+ NL D +P+   EM  R +EV+  +     Y+P   +A + W E N WM+ WL
Sbjct:  417 VPAFVYSKSTDLIPEEARGTRYSGMMHSTDWTPTFGSVVPDLPLGEMGKELSGFDHWDAIIGGGEG-EGGGVRTELV--------LGRSSYVFDLDAGE---------IVNNPRCTGWSTFSLDDPVISEDPGCDLEDACTSCTVD---CGGPELIDFLFHIDTDPYETENLRDSMPEKYAEMVQR-FEVSTNDEVVAEYKPAQPQALERWDEFNHWMVAWL 616          
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Match: A0A7S2AVP3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AVP3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.730e-21
Identity = 65/233 (27.90%), Postives = 116/233 (49.79%), Query Frame = 1
Query:   31 IPEARRGSEYDGLMYVTDWLPTLAAGAGLKLSGSAGPLDGVNQWEHIVGSAAAVDGGRPRTELLFNYDPYRLLP------NSNQVYDTGYAQGAFRSGKYKMMFNVSCQGWYTFDGDMLEEDPLTDLSKV--CG-GTCNDEGKCSDETTSDYLFDLDQDPRESNNLVDKLPDVAQEMRDRWYEVTFREYTDTVYEP----LDLRAYDVWTENNWWMIPWLTSSRQRSPEDSIH 690
            +P   +GS Y+G+M+++DW+PT+ + AG+  +     +DG++ W+ +      VD   PRTE L+N DPY          + N +      + A R G +K++ N  C  ++          PL DL +   CG  +C   G   D +++++LF+L  DP E  N++D+ PD+A++M      +   +Y   + EP     D  AY VW  + + + PW+ +      E +++
Sbjct:   13 LPTEVQGSSYEGMMHISDWMPTILSAAGI--TDLPEDIDGIDHWDALT----TVDAQSPRTEFLYNIDPYYSTMVHMDDGSINTMLTRVKPRAALRVGDWKLLLNEYCVSYFN---------PLEDLGRPEGCGQDSCATPG--IDVSSTNFLFNLITDPYEETNVIDEYPDIAKKMM-----LKIDDYMQDMVEPHFRGTDAIAYSVWARSGF-ITPWVHTETPLEGESTLN 222          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1418.2471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6W1_9PHAE9.580e-14590.78Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JIE9_9PHAE1.410e-7552.79Sulfatase domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K4V1_9PHAE3.440e-5144.10Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
D7G1A6_ECTSI8.980e-5040.36Formylglycine-dependent sulfatase n=1 Tax=Ectocarp... [more]
A0A6H5K238_9PHAE3.370e-3538.98Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KZF8_9PHAE1.880e-3035.14Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFF9_9PHAE4.780e-3042.51Sulfatase domain-containing protein n=1 Tax=Ectoca... [more]
D8LRL9_ECTSI1.580e-2843.29Formylglycine-dependent sulfatase, C-terminal Form... [more]
D7FLS1_ECTSI1.230e-2635.59Formylglycine-dependent sulfatase n=1 Tax=Ectocarp... [more]
A0A7S2AVP3_9STRA1.730e-2127.90Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1418contigE-siliculosus-1a_F_contig1418:22653..26672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size693
Model size693
Exons5
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko01002,ko03110
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.P
EC3.4.14.10
EggNOG OGsCOG3119@1,KOG3867@2759
EggNOG free text desc.sulfuric ester hydrolase activity
KEGG koko:K01280
Seed eggNOG ortholog2880.D7FUW5
Seed ortholog evalue3.4e-118
Seed ortholog score431.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1418.2471.1prot_E-siliculosus-1a_F_contig1418.2471.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1418 22653..26672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927931.5552542-CDS-E-siliculosus-1a_F_contig1418:22652..227831622927931.5552542-CDS-E-siliculosus-1a_F_contig1418:22652..22783Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1418 22653..22783 +
1696318742.7537916-CDS-E-siliculosus-1a_F_contig1418:22652..227831696318742.7537916-CDS-E-siliculosus-1a_F_contig1418:22652..22783Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1418 22653..22783 +
1622927931.5684707-CDS-E-siliculosus-1a_F_contig1418:23222..233541622927931.5684707-CDS-E-siliculosus-1a_F_contig1418:23222..23354Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1418 23223..23354 +
1696318742.7642622-CDS-E-siliculosus-1a_F_contig1418:23222..233541696318742.7642622-CDS-E-siliculosus-1a_F_contig1418:23222..23354Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1418 23223..23354 +
1622927931.582208-CDS-E-siliculosus-1a_F_contig1418:24323..244351622927931.582208-CDS-E-siliculosus-1a_F_contig1418:24323..24435Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1418 24324..24435 +
1696318742.7733178-CDS-E-siliculosus-1a_F_contig1418:24323..244351696318742.7733178-CDS-E-siliculosus-1a_F_contig1418:24323..24435Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1418 24324..24435 +
1622927931.5948925-CDS-E-siliculosus-1a_F_contig1418:24767..249111622927931.5948925-CDS-E-siliculosus-1a_F_contig1418:24767..24911Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1418 24768..24911 +
1696318742.7823417-CDS-E-siliculosus-1a_F_contig1418:24767..249111696318742.7823417-CDS-E-siliculosus-1a_F_contig1418:24767..24911Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1418 24768..24911 +
1622927931.6098404-CDS-E-siliculosus-1a_F_contig1418:26498..266721622927931.6098404-CDS-E-siliculosus-1a_F_contig1418:26498..26672Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1418 26499..26672 +
1696318742.796688-CDS-E-siliculosus-1a_F_contig1418:26498..266721696318742.796688-CDS-E-siliculosus-1a_F_contig1418:26498..26672Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1418 26499..26672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1418.2471.1

>prot_E-siliculosus-1a_F_contig1418.2471.1 ID=prot_E-siliculosus-1a_F_contig1418.2471.1|Name=mRNA_E-siliculosus-1a_F_contig1418.2471.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=231bp
VPAFVYSTSHIPEARRGSEYDGLMYVTDWLPTLAAGAGLKLSGSAGPLDG
VNQWEHIVGSAAAVDGGRPRTELLFNYDPYRLLPNSNQVYDTGYAQGAFR
SGKYKMMFNVSCQGWYTFDGDMLEEDPLTDLSKVCGGTCNDEGKCSDETT
SDYLFDLDQDPRESNNLVDKLPDVAQEMRDRWYEVTFREYTDTVYEPLDL
RAYDVWTENNWWMIPWLTSSRQRSPEDSIH*
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mRNA from alignment at E-siliculosus-1a_F_contig1418:22653..26672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1418.2471.1 ID=mRNA_E-siliculosus-1a_F_contig1418.2471.1|Name=mRNA_E-siliculosus-1a_F_contig1418.2471.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4020bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1418:22653..26672+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCCCGCGTTCGTGTACTCGACAAGCCACATCCCTGAGGCGCGACGGGG CTCGGAGTACGACGGGCTGATGTACGTCACCGATTGGCTGCCGACACTCG CGGCCGGGGCGGGTCTCAAACTGTCGGGAAGGTAAGCGTGAAAGTACCAA AGGATGGTGTTCGGCTAGTGTTGACAACGTGCGTGTAGAAACGCTCTGTG CGAGAGGTCTACATCCTTTGTGCTGCCACCACCATTGCGGATAGCTTGCG AAACGAGAAACCAATGATTGGCGGGACACAGGTTGTCAGCGGGATTCACG TACCGAAATAGTGATTCAATCACGGGAAGTTTGGCGCGGAAACACAGACC GGCCATTAGCAGCGCGCGGGCCTAAAGCGTGGTGACTGCGGCGCGAGCAG GAATATAGATCGTACGCCTCTTGGTTGGTTCCATATTCTCCGTAGATGGT TCTACGGCTGGCTTCAGCGAGGTTCCAAGCCATCAGAAACACCCAGCACG TTTGATTCATCAACACCTGCTTCCCGTACCATACTCCTTCCAACGGTGCG ACGGTGCAACTATTATTCAGTGCCGGGCCCCTAGACGGTGTCAACCAATG GGAGCACATCGTGGGGTCGGCGGCGGCAGTGGACGGGGGCAGGCCGCGCA CTGAGCTTCTCTTCAACTACGATCCGTACCGCCTGCTGCCGAACAGCAAC CAGTGAGTCTTGGTCTCGGTGTTCATTATTCGACAACGGCGCGGCACGTG TGAACCGTTACACAGTATTCTCCGCGCCCGTCACACGGTGCCCCGTGCGC TGACTCATGAAGAAATTCCGTGCGGCGTGGCGCGGTCCTGTGACGCGAAC CGTGCGAACCGAGTCGGTGACGTTGTGGGTGCTGTAAGCAGCTCAAGCAG CCATAGAACCTAGAGGGGGTGGTTGGTGACTCCCTCTGTCCACCATCACA TCTGGTTGGTGCCAAGCCTTGAGACCTCGCTAGTTCTGTGGGGCTCATGA AGAAATCGCGAGCTTTCCGCCTATAGCTTTTGGGGGGATTCGATATTTCA ATACAACGTCAGGAGTTTGTTGCGTTGCGAGAGGCATCGTTTGTGGGGTG TACCGAGTGTTAAGGTAAGAAGAAAAGCGAGCTACAGTATTGATGAAGAA AAGCGAGCTACAGTATGCGTAGGACGCTTCCGGATTAAGACAGTGGAGCG TTTACAAGTCTTGGGAATGGTGTACATCAGAGCGGCTGTTTGCCTACACT ACCAAGAGACATTTTGCAGCGGCGGTGGGAGTAGCGACAGCGCCCCGGTG GCCGCGGAGCCGTTCGACGACTTCGACAACTGGCGTTGTTGTTGTGGCGA CTGCTGCTGCTGCTGCTTTGTGCTGTTGCCGCTACGTACGGCTGTTTGCC ACGGAATTCTAACGGTCTTTCGTTGTTGCCGGTGTGAGGAGCTCAAGGCC TTGCATCCCATGCGATCGGTAACATCAAGAGAACCGGCACCGGGCAACGC GTCCTATGGATGAGAAAACTTCGCGCCGAAGATGGTATGCGCAACATAAG CTGCTGATTCTGTGGCGAAATATGCCTTTATGTGAAATCGAATGGTTGCG ATCGCCGTTCTTTGCGATGTATAAATCTGCTGCTGCTGCTACTGCTGCTG GTGCTCTTTGTGTCGTTACAGGGTCTATGACACGGGGTATGCTCAAGGAG CCTTCCGGTCTGGCAAGTACAAGATGATGTTCAACGTTTCTTGCCAAGGG TGGTACACGTTCGACGGGGACATGCTCGAAGAGGTGAAAATAATATCAAT AGAGTGGTCGATTCCAAGCTGTGTGCGGTTGGTGTCGTCGAGGCACCGGT GATTTGTTCTGCGGCATTACACCTTCATCATTTATCCATGCGATACTTGT ACAACAAGTACATCTGTATGCCTATTTGTACCCCTCGTGTGAAATCTGAA TTGTTTGAGAGACAGCAATGCTGTTGTTTCGAACATCGTTTTCACCCTTC GAAGCTTACGAGGGATATGGCGCGTGCATCAGAACGTACTGTAACGCCGA AACCGAGAAACAGCAGTGATGACATGATTTTAACAGACAAGCTGTTGTTG TTCTCCCTCGCGAAGGACCCTTTGACAGACCTCTCAAAAGTGTGCGGGGG CACGTGCAACGATGAAGGCAAATGCAGCGACGAAACCACCTCGGACTACC TGTTCGACCTCGATCAAGATCCGCGAGAATCGAACAACCTTGTCGACAAA TTGCCCGATGTAAGCAACGTCGTCCCGCCGGCGTGGTATGACACGATTTC CGTGGTGTTAAGTGTTTGGTGTTCCGTGACGCTACGTACCGATGTGCCCC TCGGGGAACGAGTGGCCTTCGCGCGAGTCTAAATGATCTCGTTGGATGGG GCGCTGGGTGGGTGTACGGTTTGGCACCCCACATCCACTACCACAAAAAT TCCCTCGACATAACACACTTTGCCACATTCACCCCCACCCACCCACCCCC AAGTGTTTCACGTGAAGTGTTTGGCATTCCTATCACCTTCAATCTCCCTT TGAAATCAGCCATCATCCTCCCCCCCTCCCCTTTCCACCACCCGCGCCAA GGCGCGTACGACGAAAAAACGAGAAGCGGGTGTGCGAGTATTGGAATCTG GAACAACGCGAGAGACAGTAATACTGTCACAGTGATTATAACGCTATCGA GTTAGTTGGTTTACTCATGCGTTAGCGGAACAGCCACTGGCTTGGGTTCA TTGATTATTATGGGGTTAGCTCACGTGGGGTGAATCTAATATCTTACTTT ATTCTAGAGCAACGGTACGCAACTCTAGTTTTACCCTAGCTGGACAACGG TACAACTAGCTTATCCTAGCTAGCCAACGGCTAGCTAGACAACGGTACAA CTAGCTTTTCCTAGCTAGGTGCACTGACTCACAGGTCTTACTGGCTCTCA GATAGCTTGCTCTCAGCACTTGAGGGTCCATTTCTTCCTTGATAAGGGCA GCGACAAAAAGTCACTTGGGGGTAGCGGACCCAAGAGGGGGTCCGCAACT GATTCGGGTATTATTTGAGACATACCCTAGCCCTCCCCAGCCCGCTTCGC AGCGGACTGGATAAACGTATTTAAGCGGGCACTCTGCTGCCGTGACAATA CCGAGAGAGCTTGGAGGCCTGTACAAACAAAATACAGAAGATGGGCGTTT AAAGATGAACCAGAGCCTAGAGAATGGGATATGGATGCGCTCAAAGACCG ACCCACAAGTACTGCCATCTCAACGTAATGTAGAGGCGTTCCGACACGAC TGCTACGAGGTCTGACTAGCTCAATGTGCGACAGCAACACGCAACAATTG CAAATCTCGACCGGTATGCTCGGTCGATGCACGAAAACCCTTTTTGTTGG GGATTCCAGAAACACGGACGGACGAGATCCACCGACTTCACGTCCAGCTG AAGAGAGAGGCAATGTGTGGATAGAGGCAAGAATGGCCAAAAGCTACATA CATTTCTAGAGTAACAGGATTGAAGGTACCACACACGAAAGAGCCTGGGA CACAAATTGGGATGGAAATCGGGGCAGGCCGAGGAGTAACTGCATGATTG GCTCCGCCTATTCACTAGGAGAATGTTCAGGCAGCGTGCCTTCGCTTGGA GACGAAACGAAAATATGAGAATAGGAGTGAGGAAGAGGTAACTACAGGCG CAGTATTCAGTTCTACATGGTTAATATGCCGTGTCGAAAAAGGAGGGTGA TTTGTCCTCAGACCAGACAAGTATGCAAATGCTTCCAACACTGAAACAAG ATAGATGAATGACTTTGCCCGAAACGTCCCGCCTCGAAAACACCAGGTGG CCCAAGAGATGCGTGACCGATGGTATGAGGTCACCTTTCGGGAGTACACC GACACCGTCTACGAACCGCTTGACCTGAGGGCATACGATGTATGGACCGA AAACAACTGGTGGATGATCCCGTGGCTGACCTCGAGCCGCCAGAGATCTC CCGAAGATAGCATCCATTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1418:22653..26672+

>mRNA_E-siliculosus-1a_F_contig1418.2471.1 ID=mRNA_E-siliculosus-1a_F_contig1418.2471.1|Name=mRNA_E-siliculosus-1a_F_contig1418.2471.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1386bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1418:22653..26672+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCCCGCGTTCGTGTACTCGACAAGCCACATCCCTGAGGCGCGACGGGG
CTCGGAGTACGACGGGCTGATGTACGTCACCGATTGGCTGCCGACACTCG
CGGCCGGGGCGGGTCTCAAACTGTCGGGAAGGTGCCCGCGTTCGTGTACT
CGACAAGCCACATCCCTGAGGCGCGACGGGGCTCGGAGTACGACGGGCTG
ATGTACGTCACCGATTGGCTGCCGACACTCGCGGCCGGGGCGGGTCTCAA
ACTGTCGGGAAGTGCCGGGCCCCTAGACGGTGTCAACCAATGGGAGCACA
TCGTGGGGTCGGCGGCGGCAGTGGACGGGGGCAGGCCGCGCACTGAGCTT
CTCTTCAACTACGATCCGTACCGCCTGCTGCCGAACAGCAACCATGCCGG
GCCCCTAGACGGTGTCAACCAATGGGAGCACATCGTGGGGTCGGCGGCGG
CAGTGGACGGGGGCAGGCCGCGCACTGAGCTTCTCTTCAACTACGATCCG
TACCGCCTGCTGCCGAACAGCAACCAGGTCTATGACACGGGGTATGCTCA
AGGAGCCTTCCGGTCTGGCAAGTACAAGATGATGTTCAACGTTTCTTGCC
AAGGGTGGTACACGTTCGACGGGGACATGCTCGAAGAGGGTCTATGACAC
GGGGTATGCTCAAGGAGCCTTCCGGTCTGGCAAGTACAAGATGATGTTCA
ACGTTTCTTGCCAAGGGTGGTACACGTTCGACGGGGACATGCTCGAAGAG
GACCCTTTGACAGACCTCTCAAAAGTGTGCGGGGGCACGTGCAACGATGA
AGGCAAATGCAGCGACGAAACCACCTCGGACTACCTGTTCGACCTCGATC
AAGATCCGCGAGAATCGAACAACCTTGTCGACAAATTGCCCGATGACCCT
TTGACAGACCTCTCAAAAGTGTGCGGGGGCACGTGCAACGATGAAGGCAA
ATGCAGCGACGAAACCACCTCGGACTACCTGTTCGACCTCGATCAAGATC
CGCGAGAATCGAACAACCTTGTCGACAAATTGCCCGATGTGGCCCAAGAG
ATGCGTGACCGATGGTATGAGGTCACCTTTCGGGAGTACACCGACACCGT
CTACGAACCGCTTGACCTGAGGGCATACGATGTATGGACCGAAAACAACT
GGTGGATGATCCCGTGGCTGACCTCGAGCCGCCAGAGATCTCCCGAAGAT
AGCATCCATTAAGTGGCCCAAGAGATGCGTGACCGATGGTATGAGGTCAC
CTTTCGGGAGTACACCGACACCGTCTACGAACCGCTTGACCTGAGGGCAT
ACGATGTATGGACCGAAAACAACTGGTGGATGATCCCGTGGCTGACCTCG
AGCCGCCAGAGATCTCCCGAAGATAGCATCCATTAA
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