mRNA_E-siliculosus-1a_F_contig14175.2466.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A0F9UXK5_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9UXK5_9ZZZZ) HSP 1 Score: 145 bits (366), Expect = 4.170e-44 Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1
Query: 1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPPLTA 222
MT NHFSPECP+CSSRLKRLPATRR K HVYCMDCGHDFGRYEYIVERYRQELE+LEAKL LPP KADEPPL A
Sbjct: 1 MTNNHFSPECPKCSSRLKRLPATRRDKAHVYCMDCGHDFGRYEYIVERYRQELETLEAKLGLPPSKADEPPLAA 74
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A6I7N0T4_HALSX (Uncharacterized protein n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A6I7N0T4_HALSX) HSP 1 Score: 137 bits (344), Expect = 9.490e-41 Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 1
Query: 1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPP 213
M HFSPECP+CSSRLKRLPATRR K HVYCMDCGHDFGRYEYIVERYRQELESLEAKL LP LKA+EPP
Sbjct: 1 MANKHFSPECPKCSSRLKRLPATRRDKAHVYCMDCGHDFGRYEYIVERYRQELESLEAKLGLPTLKAEEPP 71
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A2A3XDA8_9GAMM (Uncharacterized protein n=3 Tax=Halomonas TaxID=2745 RepID=A0A2A3XDA8_9GAMM) HSP 1 Score: 136 bits (342), Expect = 1.970e-40 Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1
Query: 1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPPLTA 222
MT NHFSPECP+C+SRLKRLPATRR +THVYCMDCGHDFGRYEY+VERYR ELE+LEAKL LPP ADE P+ A
Sbjct: 1 MTANHFSPECPECNSRLKRLPATRRDQTHVYCMDCGHDFGRYEYMVERYRSELETLEAKLGLPPATADEAPIAA 74
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A558J9B3_9GAMM (Uncharacterized protein n=14 Tax=Halomonas TaxID=2745 RepID=A0A558J9B3_9GAMM) HSP 1 Score: 134 bits (336), Expect = 1.620e-39 Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPP 213
MTTNHFSPECP+CSSRLKRLPATRRG+ HV+CMDCGHDFGR+EY+VERYR ELE+LEAKL LPP ADE P
Sbjct: 1 MTTNHFSPECPECSSRLKRLPATRRGQAHVFCMDCGHDFGRFEYLVERYRLELETLEAKLGLPPTGADETP 71
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A1A9R5L9_9GAMM (Uncharacterized protein n=3 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1A9R5L9_9GAMM) HSP 1 Score: 132 bits (332), Expect = 6.620e-39 Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPP 213
MTTNHFSPECP+CSSRLKRLPATRRG+ HV+CMDCGHDFGR+EY+VERYR ELE+LEAKL LPP A+E P
Sbjct: 1 MTTNHFSPECPECSSRLKRLPATRRGQAHVFCMDCGHDFGRFEYLVERYRLELETLEAKLGLPPTGAEETP 71
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: UPI001F0E4FAA (hypothetical protein n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001F0E4FAA) HSP 1 Score: 130 bits (328), Expect = 2.700e-38 Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1
Query: 1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADE 207
MTTNHFSPECP+CSSRLKRLPATRR + HVYCMDCGHDFGR+EY+VERYR ELE+LEAKL LPP+ DE
Sbjct: 1 MTTNHFSPECPECSSRLKRLPATRRAQAHVYCMDCGHDFGRFEYLVERYRLELETLEAKLGLPPVTIDE 69
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A511UPZ7_9GAMM (Uncharacterized protein n=1 Tax=Halovibrio variabilis TaxID=31910 RepID=A0A511UPZ7_9GAMM) HSP 1 Score: 122 bits (306), Expect = 6.310e-35 Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1
Query: 1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADE 207
MTTNHFSPECP C SRLKRLPATRR HV+CMDCGHDFGR EY+VERYR ELE+LEAKL LPP A+E
Sbjct: 1 MTTNHFSPECPDCGSRLKRLPATRRDTAHVHCMDCGHDFGRLEYLVERYRLELETLEAKLGLPPEGAEE 69
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: UPI00201EDB47 (hypothetical protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201EDB47) HSP 1 Score: 120 bits (300), Expect = 4.380e-34 Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 1
Query: 1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLP 189
M TN FSPECP+CSSRLKRLPATRR +THVYCMDCGHDFGRYE++VERYRQELE+LEA+L +P
Sbjct: 1 MKTNLFSPECPECSSRLKRLPATRRAQTHVYCMDCGHDFGRYEHLVERYRQELETLEAQLQVP 63
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: UPI001C46233D (hypothetical protein n=2 Tax=Halomonas TaxID=2745 RepID=UPI001C46233D) HSP 1 Score: 112 bits (281), Expect = 3.670e-31 Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPPLTA 222
M T HFS ECP+C SR KRLPATRR HV+CMDCGHD GR+EY+VERYR ELE+LE++L L P +EPP +A
Sbjct: 1 MATQHFSLECPKCGSRQKRLPATRRDTAHVFCMDCGHDLGRFEYLVERYRLELETLESRLGLTPASTEEPPASA 74
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A1H0EH48_9GAMM (Uncharacterized protein n=1 Tax=Halomonas arcis TaxID=416873 RepID=A0A1H0EH48_9GAMM) HSP 1 Score: 112 bits (279), Expect = 7.620e-31 Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1
Query: 1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPPLTA 222
MTT+HFSPECP+C SR K LPATRRGK+HVYC +CGHDFGRYE +V+RYR EL++LE +L + P +D L +
Sbjct: 1 MTTSHFSPECPECQSRFKNLPATRRGKSHVYCSECGHDFGRYESLVKRYRHELDTLETQLGITPAASDNAALAS 74 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14175.2466.1 >prot_E-siliculosus-1a_F_contig14175.2466.1 ID=prot_E-siliculosus-1a_F_contig14175.2466.1|Name=mRNA_E-siliculosus-1a_F_contig14175.2466.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=76bp MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRback to top mRNA from alignment at E-siliculosus-1a_F_contig14175:76..303+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14175.2466.1 ID=mRNA_E-siliculosus-1a_F_contig14175.2466.1|Name=mRNA_E-siliculosus-1a_F_contig14175.2466.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=228bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14175:76..303+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14175:76..303+ >mRNA_E-siliculosus-1a_F_contig14175.2466.1 ID=mRNA_E-siliculosus-1a_F_contig14175.2466.1|Name=mRNA_E-siliculosus-1a_F_contig14175.2466.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14175:76..303+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |