mRNA_E-siliculosus-1a_F_contig14175.2466.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14175.2466.1
Unique NamemRNA_E-siliculosus-1a_F_contig14175.2466.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A0F9UXK5_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9UXK5_9ZZZZ)

HSP 1 Score: 145 bits (366), Expect = 4.170e-44
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1
Query:    1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPPLTA 222
            MT NHFSPECP+CSSRLKRLPATRR K HVYCMDCGHDFGRYEYIVERYRQELE+LEAKL LPP KADEPPL A
Sbjct:    1 MTNNHFSPECPKCSSRLKRLPATRRDKAHVYCMDCGHDFGRYEYIVERYRQELETLEAKLGLPPSKADEPPLAA 74          
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A6I7N0T4_HALSX (Uncharacterized protein n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A6I7N0T4_HALSX)

HSP 1 Score: 137 bits (344), Expect = 9.490e-41
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPP 213
            M   HFSPECP+CSSRLKRLPATRR K HVYCMDCGHDFGRYEYIVERYRQELESLEAKL LP LKA+EPP
Sbjct:    1 MANKHFSPECPKCSSRLKRLPATRRDKAHVYCMDCGHDFGRYEYIVERYRQELESLEAKLGLPTLKAEEPP 71          
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A2A3XDA8_9GAMM (Uncharacterized protein n=3 Tax=Halomonas TaxID=2745 RepID=A0A2A3XDA8_9GAMM)

HSP 1 Score: 136 bits (342), Expect = 1.970e-40
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPPLTA 222
            MT NHFSPECP+C+SRLKRLPATRR +THVYCMDCGHDFGRYEY+VERYR ELE+LEAKL LPP  ADE P+ A
Sbjct:    1 MTANHFSPECPECNSRLKRLPATRRDQTHVYCMDCGHDFGRYEYMVERYRSELETLEAKLGLPPATADEAPIAA 74          
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A558J9B3_9GAMM (Uncharacterized protein n=14 Tax=Halomonas TaxID=2745 RepID=A0A558J9B3_9GAMM)

HSP 1 Score: 134 bits (336), Expect = 1.620e-39
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPP 213
            MTTNHFSPECP+CSSRLKRLPATRRG+ HV+CMDCGHDFGR+EY+VERYR ELE+LEAKL LPP  ADE P
Sbjct:    1 MTTNHFSPECPECSSRLKRLPATRRGQAHVFCMDCGHDFGRFEYLVERYRLELETLEAKLGLPPTGADETP 71          
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A1A9R5L9_9GAMM (Uncharacterized protein n=3 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A1A9R5L9_9GAMM)

HSP 1 Score: 132 bits (332), Expect = 6.620e-39
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPP 213
            MTTNHFSPECP+CSSRLKRLPATRRG+ HV+CMDCGHDFGR+EY+VERYR ELE+LEAKL LPP  A+E P
Sbjct:    1 MTTNHFSPECPECSSRLKRLPATRRGQAHVFCMDCGHDFGRFEYLVERYRLELETLEAKLGLPPTGAEETP 71          
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: UPI001F0E4FAA (hypothetical protein n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001F0E4FAA)

HSP 1 Score: 130 bits (328), Expect = 2.700e-38
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADE 207
            MTTNHFSPECP+CSSRLKRLPATRR + HVYCMDCGHDFGR+EY+VERYR ELE+LEAKL LPP+  DE
Sbjct:    1 MTTNHFSPECPECSSRLKRLPATRRAQAHVYCMDCGHDFGRFEYLVERYRLELETLEAKLGLPPVTIDE 69          
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A511UPZ7_9GAMM (Uncharacterized protein n=1 Tax=Halovibrio variabilis TaxID=31910 RepID=A0A511UPZ7_9GAMM)

HSP 1 Score: 122 bits (306), Expect = 6.310e-35
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADE 207
            MTTNHFSPECP C SRLKRLPATRR   HV+CMDCGHDFGR EY+VERYR ELE+LEAKL LPP  A+E
Sbjct:    1 MTTNHFSPECPDCGSRLKRLPATRRDTAHVHCMDCGHDFGRLEYLVERYRLELETLEAKLGLPPEGAEE 69          
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: UPI00201EDB47 (hypothetical protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201EDB47)

HSP 1 Score: 120 bits (300), Expect = 4.380e-34
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLP 189
            M TN FSPECP+CSSRLKRLPATRR +THVYCMDCGHDFGRYE++VERYRQELE+LEA+L +P
Sbjct:    1 MKTNLFSPECPECSSRLKRLPATRRAQTHVYCMDCGHDFGRYEHLVERYRQELETLEAQLQVP 63          
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: UPI001C46233D (hypothetical protein n=2 Tax=Halomonas TaxID=2745 RepID=UPI001C46233D)

HSP 1 Score: 112 bits (281), Expect = 3.670e-31
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPPLTA 222
            M T HFS ECP+C SR KRLPATRR   HV+CMDCGHD GR+EY+VERYR ELE+LE++L L P   +EPP +A
Sbjct:    1 MATQHFSLECPKCGSRQKRLPATRRDTAHVFCMDCGHDLGRFEYLVERYRLELETLESRLGLTPASTEEPPASA 74          
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Match: A0A1H0EH48_9GAMM (Uncharacterized protein n=1 Tax=Halomonas arcis TaxID=416873 RepID=A0A1H0EH48_9GAMM)

HSP 1 Score: 112 bits (279), Expect = 7.620e-31
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYRQELESLEAKLDLPPLKADEPPLTA 222
            MTT+HFSPECP+C SR K LPATRRGK+HVYC +CGHDFGRYE +V+RYR EL++LE +L + P  +D   L +
Sbjct:    1 MTTSHFSPECPECQSRFKNLPATRRGKSHVYCSECGHDFGRYESLVKRYRHELDTLETQLGITPAASDNAALAS 74          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14175.2466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A0F9UXK5_9ZZZZ4.170e-4489.19Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A6I7N0T4_HALSX9.490e-4187.32Uncharacterized protein n=1 Tax=Halomonas sp. TaxI... [more]
A0A2A3XDA8_9GAMM1.970e-4081.08Uncharacterized protein n=3 Tax=Halomonas TaxID=27... [more]
A0A558J9B3_9GAMM1.620e-3983.10Uncharacterized protein n=14 Tax=Halomonas TaxID=2... [more]
A0A1A9R5L9_9GAMM6.620e-3981.69Uncharacterized protein n=3 Tax=unclassified Halom... [more]
UPI001F0E4FAA2.700e-3882.61hypothetical protein n=1 Tax=Halomonas neptunia Ta... [more]
A0A511UPZ7_9GAMM6.310e-3579.71Uncharacterized protein n=1 Tax=Halovibrio variabi... [more]
UPI00201EDB474.380e-3482.54hypothetical protein n=1 Tax=Halomonas olivaria Ta... [more]
UPI001C46233D3.670e-3166.22hypothetical protein n=2 Tax=Halomonas TaxID=2745 ... [more]
A0A1H0EH48_9GAMM7.620e-3163.51Uncharacterized protein n=1 Tax=Halomonas arcis Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14175contigE-siliculosus-1a_F_contig14175:76..303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size228
Model size228
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927930.8901944-CDS-E-siliculosus-1a_F_contig14175:75..3031622927930.8901944-CDS-E-siliculosus-1a_F_contig14175:75..303Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14175 76..303 +
1696318742.4329424-CDS-E-siliculosus-1a_F_contig14175:75..3031696318742.4329424-CDS-E-siliculosus-1a_F_contig14175:75..303Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14175 76..303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14175.2466.1prot_E-siliculosus-1a_F_contig14175.2466.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14175 76..303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14175.2466.1

>prot_E-siliculosus-1a_F_contig14175.2466.1 ID=prot_E-siliculosus-1a_F_contig14175.2466.1|Name=mRNA_E-siliculosus-1a_F_contig14175.2466.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=76bp
MTTNHFSPECPQCSSRLKRLPATRRGKTHVYCMDCGHDFGRYEYIVERYR
QELESLEAKLDLPPLKADEPPLTAF*
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mRNA from alignment at E-siliculosus-1a_F_contig14175:76..303+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14175.2466.1 ID=mRNA_E-siliculosus-1a_F_contig14175.2466.1|Name=mRNA_E-siliculosus-1a_F_contig14175.2466.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=228bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14175:76..303+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAACCAATCATTTCAGTCCTGAGTGCCCACAATGCAGCAGCAGACT AAAACGCTTACCCGCCACGCGTCGTGGTAAAACCCATGTGTATTGCATGG ACTGTGGGCATGACTTTGGCCGCTATGAATACATAGTGGAGCGCTACCGC CAAGAACTTGAGTCCCTGGAAGCTAAACTTGATCTGCCACCTTTGAAAGC AGATGAGCCGCCTCTTACAGCTTTCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14175:76..303+

>mRNA_E-siliculosus-1a_F_contig14175.2466.1 ID=mRNA_E-siliculosus-1a_F_contig14175.2466.1|Name=mRNA_E-siliculosus-1a_F_contig14175.2466.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14175:76..303+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAACCAATCATTTCAGTCCTGAGTGCCCACAATGCAGCAGCAGACT
AAAACGCTTACCCGCCACGCGTCGTGGTAAAACCCATGTGTATTGCATGG
ACTGTGGGCATGACTTTGGCCGCTATGAATACATAGTGGAGCGCTACCGC
CAAGAACTTGAGTCCCTGGAAGCTAAACTTGATCTGCCACCTTTGAAAGC
AGATGAGCCGCCTCTTACAGCTTTCTAAATGACAACCAATCATTTCAGTC
CTGAGTGCCCACAATGCAGCAGCAGACTAAAACGCTTACCCGCCACGCGT
CGTGGTAAAACCCATGTGTATTGCATGGACTGTGGGCATGACTTTGGCCG
CTATGAATACATAGTGGAGCGCTACCGCCAAGAACTTGAGTCCCTGGAAG
CTAAACTTGATCTGCCACCTTTGAAAGCAGATGAGCCGCCTCTTACAGCT
TTCTAA
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