mRNA_E-siliculosus-1a_F_contig1417.2464.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1417.2464.1
Unique NamemRNA_E-siliculosus-1a_F_contig1417.2464.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1417.2464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1417contigE-siliculosus-1a_F_contig1417:18812..19564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size438
Model size753
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1417.2464.1prot_E-siliculosus-1a_F_contig1417.2464.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1417 18836..19273 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927930.6519809-UTR-E-siliculosus-1a_F_contig1417:18811..188351622927930.6519809-UTR-E-siliculosus-1a_F_contig1417:18811..18835Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1417 18812..18835 +
1696318742.3086402-UTR-E-siliculosus-1a_F_contig1417:18811..188351696318742.3086402-UTR-E-siliculosus-1a_F_contig1417:18811..18835Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1417 18812..18835 +
1622927930.6886704-UTR-E-siliculosus-1a_F_contig1417:19273..195641622927930.6886704-UTR-E-siliculosus-1a_F_contig1417:19273..19564Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1417 19274..19564 +
1696318742.32579-UTR-E-siliculosus-1a_F_contig1417:19273..195641696318742.32579-UTR-E-siliculosus-1a_F_contig1417:19273..19564Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1417 19274..19564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927930.672055-CDS-E-siliculosus-1a_F_contig1417:18835..192731622927930.672055-CDS-E-siliculosus-1a_F_contig1417:18835..19273Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1417 18836..19273 +
1696318742.316862-CDS-E-siliculosus-1a_F_contig1417:18835..192731696318742.316862-CDS-E-siliculosus-1a_F_contig1417:18835..19273Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1417 18836..19273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1417.2464.1

>prot_E-siliculosus-1a_F_contig1417.2464.1 ID=prot_E-siliculosus-1a_F_contig1417.2464.1|Name=mRNA_E-siliculosus-1a_F_contig1417.2464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=146bp
MTEAGMFVITGCHSHTIGWKVCHHSLLPPPLSLAGKISINGCHPHSNRVE
CSPSLAASSIIVGWNDHHHSTPRCHWLEKSAPTAATPTQIGWNAHHRWLH
RLYSRLECPSSLASATPTIIGWKKSPSLRMSTAGRHSRAMYRSLE*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1417:18812..19564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1417.2464.1 ID=mRNA_E-siliculosus-1a_F_contig1417.2464.1|Name=mRNA_E-siliculosus-1a_F_contig1417.2464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=753bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1417:18812..19564+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGCCTCTCCGGCGAGCGGAAGCAATGACCGAGGCTGGAATGTTCGTCAT
CACCGGCTGCCACTCGCACACAATCGGCTGGAAAGTTTGTCATCACTCGC
TGCTGCCACCGCCACTGTCATTGGCTGGAAAAATCAGCATCAACGGCTGC
CACCCCCACTCCAATAGGGTGGAATGCTCACCATCACTGGCTGCTTCTTC
TATAATAGTAGGCTGGAATGACCATCATCACTCCACTCCCCGCTGTCATT
GGTTGGAAAAATCAGCACCAACGGCTGCCACTCCCACTCAAATAGGGTGG
AATGCTCATCATCGCTGGCTGCATCGTCTATATAGTAGGCTAGAATGTCC
ATCATCACTGGCTTCTGCCACCCCCACTATCATAGGCTGGAAAAAATCAC
CATCACTGAGAATGTCCACCGCCGGTCGCCACTCCCGCGCTATGTACCGC
AGCTTGGAATAAATACACCGGCTGCCGCTCTCCCAAGCACTAGGCCGGAA
CGGTCATCATCATCGCCGGCTGCCTGCCACTCCCGACTATTAGGCCGGAA
TGTTCATCATCACCGGCTTGTGCCACTCCCCCCACTATCATAGGCTGCAA
AAATCACCATCACTGGCCGCCACTCCCGCAGCCTGGAACAAATACCACCG
GCTGCCGCTCTCCCTACTATTTAGGCCGGAACGGGCATCATCGCCGCCGG
CCGCCTGCCGCTCCCGACTACTAGGCCGGAATGTTCATCATCACCGGCTG
CCA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1417:18812..19564+

>mRNA_E-siliculosus-1a_F_contig1417.2464.1 ID=mRNA_E-siliculosus-1a_F_contig1417.2464.1|Name=mRNA_E-siliculosus-1a_F_contig1417.2464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1417:18812..19564+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCGAGGCTGGAATGTTCGTCATCACCGGCTGCCACTCGCACACAAT
CGGCTGGAAAGTTTGTCATCACTCGCTGCTGCCACCGCCACTGTCATTGG
CTGGAAAAATCAGCATCAACGGCTGCCACCCCCACTCCAATAGGGTGGAA
TGCTCACCATCACTGGCTGCTTCTTCTATAATAGTAGGCTGGAATGACCA
TCATCACTCCACTCCCCGCTGTCATTGGTTGGAAAAATCAGCACCAACGG
CTGCCACTCCCACTCAAATAGGGTGGAATGCTCATCATCGCTGGCTGCAT
CGTCTATATAGTAGGCTAGAATGTCCATCATCACTGGCTTCTGCCACCCC
CACTATCATAGGCTGGAAAAAATCACCATCACTGAGAATGTCCACCGCCG
GTCGCCACTCCCGCGCTATGTACCGCAGCTTGGAATAAATGACCGAGGCT
GGAATGTTCGTCATCACCGGCTGCCACTCGCACACAATCGGCTGGAAAGT
TTGTCATCACTCGCTGCTGCCACCGCCACTGTCATTGGCTGGAAAAATCA
GCATCAACGGCTGCCACCCCCACTCCAATAGGGTGGAATGCTCACCATCA
CTGGCTGCTTCTTCTATAATAGTAGGCTGGAATGACCATCATCACTCCAC
TCCCCGCTGTCATTGGTTGGAAAAATCAGCACCAACGGCTGCCACTCCCA
CTCAAATAGGGTGGAATGCTCATCATCGCTGGCTGCATCGTCTATATAGT
AGGCTAGAATGTCCATCATCACTGGCTTCTGCCACCCCCACTATCATAGG
CTGGAAAAAATCACCATCACTGAGAATGTCCACCGCCGGTCGCCACTCCC
GCGCTATGTACCGCAGCTTGGAATAA
back to top