mRNA_E-siliculosus-1a_F_contig14151.2456.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14151.2456.1
Unique NamemRNA_E-siliculosus-1a_F_contig14151.2456.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Match: A0A0D5M282_9GAMM (SSS sodium solute transporter superfamily n=46 Tax=root TaxID=1 RepID=A0A0D5M282_9GAMM)

HSP 1 Score: 388 bits (997), Expect = 2.600e-131
Identity = 203/210 (96.67%), Postives = 209/210 (99.52%), Query Frame = 1 
Query:    1 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 630
            HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNK ATEAQVVKSGKVFGWIMAI+TMIIAPLLAGQ+SLFGYLQKMNAIYFIPILAVV+VGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVV+MLIIGKLRPRETDW+Q+HSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG
Sbjct:  322 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKEATEAQVVKSGKVFGWIMAIITMIIAPLLAGQESLFGYLQKMNAIYFIPILAVVLVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVVMLIIGKLRPRETDWIQQHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 531
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Match: A0A511UQS3_9GAMM (Solute:sodium symporter family transporter n=2 Tax=Halomonadaceae TaxID=28256 RepID=A0A511UQS3_9GAMM)

HSP 1 Score: 385 bits (988), Expect = 5.990e-130
Identity = 200/210 (95.24%), Postives = 208/210 (99.05%), Query Frame = 1 
Query:    1 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 630
            HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNA+E QVVKSGKVFGWIMA+ TMIIAPLLAGQ+SLFGYLQKMNAIYFIPILAVV+VGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQ+MHEFHFVALVFVLLVV+MLIIGKLRPRETDW+Q+HSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG
Sbjct:  322 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNASEEQVVKSGKVFGWIMAVSTMIIAPLLAGQESLFGYLQKMNAIYFIPILAVVLVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQVMHEFHFVALVFVLLVVVMLIIGKLRPRETDWIQQHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 531
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Match: A0A2D9LK30_HALSX (Solute:sodium symporter family transporter (Fragment) n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A2D9LK30_HALSX)

HSP 1 Score: 365 bits (938), Expect = 2.570e-124
Identity = 190/210 (90.48%), Postives = 198/210 (94.29%), Query Frame = 1 
Query:    1 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 630
            HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVL K+ATE QVVKSGKVFGWIMAI TMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVV+VGLLTKRVPPMAAK+ALVGGCLLIAAGYFVPPF  LP +MHEFHFVA VFVLLV +ML+IGKLRPR TDWVQE SGDVDLTPWKGAVP GIVLVVLV++MY SFAG
Sbjct:  181 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLKKDATEEQVVKSGKVFGWIMAITTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVLVGLLTKRVPPMAAKVALVGGCLLIAAGYFVPPFNKLPMVMHEFHFVAAVFVLLVAVMLVIGKLRPRATDWVQEDSGDVDLTPWKGAVPTGIVLVVLVVIMYASFAG 390
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Match: A0A1H0IIA7_9GAMM (Solute:Na+ symporter, SSS family n=2 Tax=Halomonas TaxID=2745 RepID=A0A1H0IIA7_9GAMM)

HSP 1 Score: 370 bits (949), Expect = 4.740e-124
Identity = 191/210 (90.95%), Postives = 200/210 (95.24%), Query Frame = 1 
Query:    1 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 630
            HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYK VLNKNA+E QVVKSGKVFGW+MAI+TMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVV+VGLLTKRVPPMAAK+ LVGGCLLIAAGYFVPPF  LP +MHEFHFVA VFVLLV +ML+IGKLRPRETDWVQEHSGDVDLTPWKGAVP GIVLVVLVI+MY SFAG
Sbjct:  322 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKQVLNKNASEEQVVKSGKVFGWVMAIITMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVLVGLLTKRVPPMAAKVGLVGGCLLIAAGYFVPPFNKLPAVMHEFHFVAAVFVLLVAVMLLIGKLRPRETDWVQEHSGDVDLTPWKGAVPTGIVLVVLVIIMYASFAG 531
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Match: A0A060BA40_9GAMM (Transporter n=50 Tax=Halomonadaceae TaxID=28256 RepID=A0A060BA40_9GAMM)

HSP 1 Score: 361 bits (927), Expect = 1.000e-120
Identity = 188/210 (89.52%), Postives = 197/210 (93.81%), Query Frame = 1 
Query:    1 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 630
            HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVL K+ATE +VVKSGKVFGWIMA+ TMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVV+VGLLTKRVPPMAAK+ALVGGCLLIAAGYFVPPF  LP +MHEFHFVA VFVLLV +MLIIGKLRPR T WVQE SGDVDLTPWKGAVP GIVLVVLV++MY SFAG
Sbjct:  322 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLKKDATEEEVVKSGKVFGWIMAVTTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVLVGLLTKRVPPMAAKVALVGGCLLIAAGYFVPPFNKLPMVMHEFHFVAAVFVLLVAVMLIIGKLRPRATAWVQEDSGDVDLTPWKGAVPTGIVLVVLVVIMYASFAG 531
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Match: A0A2N7TP10_9GAMM (Solute:sodium symporter family transporter n=11 Tax=Halomonadaceae TaxID=28256 RepID=A0A2N7TP10_9GAMM)

HSP 1 Score: 353 bits (905), Expect = 2.170e-117
Identity = 182/210 (86.67%), Postives = 200/210 (95.24%), Query Frame = 1 
Query:    1 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 630
            HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVL K+A++ QVV++GKVFGWIMAI+TM IAPLLAGQ+SLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAK+ALVGGCLLIAAGYFVPPF  LP I+HEFHFVA VFVLLV +ML+IG+LRPR+TDWV E+SGDVDLTPWKGAVPAGIVLVVLV+++Y +FAG
Sbjct:  322 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLKKDASDEQVVRAGKVFGWIMAIVTMTIAPLLAGQESLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKVALVGGCLLIAAGYFVPPFDKLPLIIHEFHFVAGVFVLLVAVMLLIGRLRPRDTDWVHEYSGDVDLTPWKGAVPAGIVLVVLVVIIYAAFAG 531
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Match: S2KK86_HALAF (Transporter n=1 Tax=Halomonas anticariensis (strain DSM 16096 / CECT 5854 / LMG 22089 / FP35) TaxID=1121939 RepID=S2KK86_HALAF)

HSP 1 Score: 350 bits (898), Expect = 2.410e-116
Identity = 181/210 (86.19%), Postives = 195/210 (92.86%), Query Frame = 1 
Query:    1 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 630
            HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLG+YKGVLNKNAT+ QVV SGKVFGWIMA++TM IAPLLAGQ+SLF YLQKMNAIYFIPILAVVIVGLLTKRVPPMAAK+AL+GGCLLIAAGYFVPPF  LP IMHEFHFVA VFVLLV +ML+IGKLRPR T+WV E SG VDLTPWKGA+P GIVLVVLVI +Y++FAG
Sbjct:  322 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGLYKGVLNKNATDEQVVNSGKVFGWIMAVVTMTIAPLLAGQESLFSYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKVALIGGCLLIAAGYFVPPFNKLPIIMHEFHFVASVFVLLVAIMLLIGKLRPRPTEWVHEDSGAVDLTPWKGAIPCGIVLVVLVIAIYLAFAG 531
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Match: U7NWJ9_9GAMM (Transporter n=9 Tax=Halomonas TaxID=2745 RepID=U7NWJ9_9GAMM)

HSP 1 Score: 348 bits (892), Expect = 2.000e-115
Identity = 181/210 (86.19%), Postives = 196/210 (93.33%), Query Frame = 1 
Query:    1 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 630
             LVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNA+EAQVV+SGKVFGWIMA +TM+IAPLLAGQ+SLFGYLQKMNAIYFIPILAVV+VGLL++RVPPMAAKIALVGGCLLIAAGYFVPPF  LP IMHEFHFVALVFVLLV MML+IG+LRPRET WV E    VDLTPWKGAVP GIVLV+LV+++Y +FAG
Sbjct:  322 QLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNASEAQVVRSGKVFGWIMAAVTMVIAPLLAGQESLFGYLQKMNAIYFIPILAVVVVGLLSRRVPPMAAKIALVGGCLLIAAGYFVPPFNKLPVIMHEFHFVALVFVLLVAMMLLIGRLRPRETPWVHEDVQAVDLTPWKGAVPVGIVLVLLVVIIYAAFAG 531
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Match: A0A510X6E4_9GAMM (Solute:sodium symporter family transporter n=2 Tax=Halomonas TaxID=2745 RepID=A0A510X6E4_9GAMM)

HSP 1 Score: 347 bits (891), Expect = 2.740e-115
Identity = 182/210 (86.67%), Postives = 195/210 (92.86%), Query Frame = 1 
Query:    1 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 630
             LVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVL K+A+E QVV SGK+FGWIMAI+TMIIAPLLAGQ+SLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAK+ALVGGCLLIAAGYFVPPF  LP IMHEFHFVA VFVLLV +ML+IGKLRPR T WV E SG+VDLTPWKGAVP GIVLV+LVI++Y +FAG
Sbjct:  322 QLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLKKDASEEQVVASGKIFGWIMAIVTMIIAPLLAGQESLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKVALVGGCLLIAAGYFVPPFDKLPMIMHEFHFVAAVFVLLVAVMLLIGKLRPRPTPWVHEDSGEVDLTPWKGAVPVGIVLVLLVILIYAAFAG 531
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Match: UPI0005B7B2BD (solute:sodium symporter family transporter n=1 Tax=Halomonas xinjiangensis TaxID=1166948 RepID=UPI0005B7B2BD)

HSP 1 Score: 343 bits (880), Expect = 1.250e-113
Identity = 174/210 (82.86%), Postives = 196/210 (93.33%), Query Frame = 1 
Query:    1 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKNATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPILAVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFVALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVLVIVMYISFAG 630
            HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLG+YKGV+NK+ATE QVV+SGK+FGWIMA  TMIIAPLLAGQ+SLFGYLQ+MNAIYFIPILAVV+VGLLTKRVPPMAAKIALVGGCL+IA GYFVPPF  +P+IM+EFHFVA VFV+LV  ML+IGK RPR+T+WV E SG VDLTPWKGA+P+GI+LVVLVI +Y++FAG
Sbjct:  322 HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGMYKGVINKDATEDQVVRSGKIFGWIMAFATMIIAPLLAGQESLFGYLQRMNAIYFIPILAVVLVGLLTKRVPPMAAKIALVGGCLMIAVGYFVPPFNRIPEIMNEFHFVASVFVILVATMLLIGKWRPRQTEWVHEDSGAVDLTPWKGAIPSGIILVVLVIAIYVAFAG 531
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14151.2456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D5M282_9GAMM2.600e-13196.67SSS sodium solute transporter superfamily n=46 Tax... [more]
A0A511UQS3_9GAMM5.990e-13095.24Solute:sodium symporter family transporter n=2 Tax... [more]
A0A2D9LK30_HALSX2.570e-12490.48Solute:sodium symporter family transporter (Fragme... [more]
A0A1H0IIA7_9GAMM4.740e-12490.95Solute:Na+ symporter, SSS family n=2 Tax=Halomonas... [more]
A0A060BA40_9GAMM1.000e-12089.52Transporter n=50 Tax=Halomonadaceae TaxID=28256 Re... [more]
A0A2N7TP10_9GAMM2.170e-11786.67Solute:sodium symporter family transporter n=11 Ta... [more]
S2KK86_HALAF2.410e-11686.19Transporter n=1 Tax=Halomonas anticariensis (strai... [more]
U7NWJ9_9GAMM2.000e-11586.19Transporter n=9 Tax=Halomonas TaxID=2745 RepID=U7N... [more]
A0A510X6E4_9GAMM2.740e-11586.67Solute:sodium symporter family transporter n=2 Tax... [more]
UPI0005B7B2BD1.250e-11382.86solute:sodium symporter family transporter n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14151contigE-siliculosus-1a_F_contig14151:531..1163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size633
Model size633
Exons1
Hectar predicted targeting categorysignal peptide
BRITEko00000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
BiGG ReactioniECIAI1_1343.ECIAI1_3857,iECO111_1330.ECO111_4504,iECO26_1355.ECO26_4903,iECSE_1348.ECSE_3965,iECW_1372.ECW_m3979,iEKO11_1354.EKO11_0023,iEcE24377_1341.EcE24377A_4187,iWFL_1372.ECW_m3979
COG Functional cat.S
EggNOG OGs1MXWV@1224,1RR4S@1236,1XNYN@135619,COG4146@1,COG4146@2
EggNOG free text desc.Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0008150,GO:0015291,GO:0015293,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944
KEGG TC2.A.21
KEGG koko:K03307
Preferred nameyidK
Seed eggNOG ortholog1504981.KO116_2019
Seed ortholog evalue4e-105
Seed ortholog score387.5
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927929.6769557-CDS-E-siliculosus-1a_F_contig14151:530..11631622927929.6769557-CDS-E-siliculosus-1a_F_contig14151:530..1163Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14151 531..1163 -
1696318741.8158796-CDS-E-siliculosus-1a_F_contig14151:530..11631696318741.8158796-CDS-E-siliculosus-1a_F_contig14151:530..1163Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14151 531..1163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14151.2456.1prot_E-siliculosus-1a_F_contig14151.2456.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14151 531..1163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14151.2456.1

>prot_E-siliculosus-1a_F_contig14151.2456.1 ID=prot_E-siliculosus-1a_F_contig14151.2456.1|Name=mRNA_E-siliculosus-1a_F_contig14151.2456.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=211bp
HLVFNVLPPYLTGFFAAVMVGAILSSFNSALNSTTTIFSLGIYKGVLNKN
ATEAQVVKSGKVFGWIMAILTMIIAPLLAGQDSLFGYLQKMNAIYFIPIL
AVVIVGLLTKRVPPMAAKIALVGGCLLIAAGYFVPPFTLLPQIMHEFHFV
ALVFVLLVVMMLIIGKLRPRETDWVQEHSGDVDLTPWKGAVPAGIVLVVL
VIVMYISFAG*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig14151:531..1163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14151.2456.1 ID=mRNA_E-siliculosus-1a_F_contig14151.2456.1|Name=mRNA_E-siliculosus-1a_F_contig14151.2456.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=633bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14151:531..1163- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CATTTAGTATTTAACGTACTACCGCCTTATTTAACGGGGTTTTTCGCTGC
GGTGATGGTCGGTGCGATTCTGTCGTCATTTAACTCGGCGCTCAACAGCA
CCACGACGATTTTCAGCCTGGGTATCTATAAAGGCGTGCTGAATAAAAAT
GCTACTGAAGCGCAAGTTGTTAAATCGGGCAAGGTGTTTGGCTGGATCAT
GGCTATCCTCACCATGATTATTGCGCCGCTGCTGGCTGGCCAGGATAGCC
TGTTTGGTTATCTGCAGAAGATGAACGCGATCTATTTTATTCCCATTCTG
GCGGTCGTTATCGTTGGCCTACTCACTAAGCGAGTGCCGCCTATGGCGGC
CAAAATTGCGTTAGTGGGCGGGTGCTTGTTAATTGCAGCAGGCTACTTTG
TACCGCCGTTCACACTGCTTCCCCAGATCATGCATGAGTTCCACTTTGTA
GCGCTGGTCTTTGTGCTGCTAGTGGTAATGATGCTGATTATTGGCAAGCT
GCGCCCGCGTGAGACAGATTGGGTGCAAGAGCATAGCGGTGATGTGGATC
TCACGCCATGGAAGGGGGCAGTACCTGCCGGTATCGTACTGGTGGTGTTG
GTGATCGTTATGTATATAAGCTTCGCCGGTTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14151:531..1163-

>mRNA_E-siliculosus-1a_F_contig14151.2456.1 ID=mRNA_E-siliculosus-1a_F_contig14151.2456.1|Name=mRNA_E-siliculosus-1a_F_contig14151.2456.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14151:531..1163- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CATTTAGTATTTAACGTACTACCGCCTTATTTAACGGGGTTTTTCGCTGC
GGTGATGGTCGGTGCGATTCTGTCGTCATTTAACTCGGCGCTCAACAGCA
CCACGACGATTTTCAGCCTGGGTATCTATAAAGGCGTGCTGAATAAAAAT
GCTACTGAAGCGCAAGTTGTTAAATCGGGCAAGGTGTTTGGCTGGATCAT
GGCTATCCTCACCATGATTATTGCGCCGCTGCTGGCTGGCCAGGATAGCC
TGTTTGGTTATCTGCAGAAGATGAACGCGATCTATTTTATTCCCATTCTG
GCGGTCGTTATCGTTGGCCTACTCACTAAGCGAGTGCCGCCTATGGCGGC
CAAAATTGCGTTAGTGGGCGGGTGCTTGTTAATTGCAGCAGGCTACTTTG
TACCGCCGTTCACACTGCTTCCCCAGATCATGCATGAGTTCCACTTTGTA
GCGCTGGTCTTTGTGCTGCTAGTGGTAATGATGCTGATTATTGGCAAGCT
GCGCCCGCGTGAGACAGATTGGGTGCAAGAGCATAGCGGTGATGTGGATC
TCACGCCATGGAAGGGGGCAGTACCTGCCGGTATCGTACTGGTGGTGTTG
GTGATCGTTATGTATATAAGCTTCGCCGGTTAACATTTAGTATTTAACGT
ACTACCGCCTTATTTAACGGGGTTTTTCGCTGCGGTGATGGTCGGTGCGA
TTCTGTCGTCATTTAACTCGGCGCTCAACAGCACCACGACGATTTTCAGC
CTGGGTATCTATAAAGGCGTGCTGAATAAAAATGCTACTGAAGCGCAAGT
TGTTAAATCGGGCAAGGTGTTTGGCTGGATCATGGCTATCCTCACCATGA
TTATTGCGCCGCTGCTGGCTGGCCAGGATAGCCTGTTTGGTTATCTGCAG
AAGATGAACGCGATCTATTTTATTCCCATTCTGGCGGTCGTTATCGTTGG
CCTACTCACTAAGCGAGTGCCGCCTATGGCGGCCAAAATTGCGTTAGTGG
GCGGGTGCTTGTTAATTGCAGCAGGCTACTTTGTACCGCCGTTCACACTG
CTTCCCCAGATCATGCATGAGTTCCACTTTGTAGCGCTGGTCTTTGTGCT
GCTAGTGGTAATGATGCTGATTATTGGCAAGCTGCGCCCGCGTGAGACAG
ATTGGGTGCAAGAGCATAGCGGTGATGTGGATCTCACGCCATGGAAGGGG
GCAGTACCTGCCGGTATCGTACTGGTGGTGTTGGTGATCGTTATGTATAT
AAGCTTCGCCGGTTAA
back to top