mRNA_E-siliculosus-1a_F_contig14132.2449.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 235 bits (599), Expect = 2.470e-70 Identity = 120/139 (86.33%), Postives = 126/139 (90.65%), Query Frame = -3
Query: 7 ALEKLRPPNLPDMAAVPSGAFELPRSSYVERAAVQEVADGLTAPEDPRAPYIVVGMGGGGKSVLASAVVRKPSVREHFRGGIIWLRVGRGAKNSLLALLQGLAREIGAAPTDTPHGVPHVLDSLEQVKQHLGTVASTGT 423
AL L PP+LPDMAAVP+GA ELP SSYVERAAVQEVADGLT+PEDPRAPY VVGMGGGGKSVLASAVVRKPSVREHFRGGI W+RVGRGAK+SLLALLQGLARE+GAA TD PH VPHVLD LEQVKQHL VASTGT
Sbjct: 193 ALPSLLPPSLPDMAAVPAGALELPCSSYVERAAVQEVADGLTSPEDPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGT 331
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 232 bits (591), Expect = 3.260e-67 Identity = 117/140 (83.57%), Postives = 125/140 (89.29%), Query Frame = -3
Query: 4 ALEKLRPPNLPDMAAVPSGAFELPRSSYVERAAVQEVADGLTAPEDPRAPYIVVGMGGGGKSVLASAVVRKPSVREHFRGGIIWLRVGRGAKNSLLALLQGLAREIGAAPTDTPHGVPHVLDSLEQVKQHLGTVASTGTS 423
AL L PP+LPDMAAVP+GA ELP SSYVERAAVQEVADGLT PE+ RAPY VVGMGGGGKSVLASA VRKPSVREHFRGGI W+RVGRGAK+SLLALLQGLA ++GAAPTD PHGVPHVLD LEQV+QHL VASTGTS
Sbjct: 247 ALPSLLPPSLPDMAAVPTGALELPSSSYVERAAVQEVADGLTTPEESRAPYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTS 386
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 232 bits (591), Expect = 3.470e-67 Identity = 118/141 (83.69%), Postives = 127/141 (90.07%), Query Frame = -3
Query: 1 ALEKLRPPNLPDMAAVPSGAFELPRSSYVERAAVQEVADGLTAPEDPRAPYIVVGMGGGGKSVLASAVVRKPSVREHFRGGIIWLRVGRGAKNSLLALLQGLAREIGAAPTDTPHGVPHVLDSLEQVKQHLGTVASTGTSR 423
AL L PP+LPDMAAVP+GA ELP SSYVERAAVQEVADGLTAPE+ RAPY VVGMGGGGKSVLASAVVRKPSVREHFRGGI W+RVGRGAK+SLLALLQGLAR++GAAPTD P GVP VLDSLEQV+QHL V STGTS+
Sbjct: 230 ALPSLLPPSLPDMAAVPAGALELPSSSYVERAAVQEVADGLTAPEESRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQ 370
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 229 bits (585), Expect = 2.200e-66 Identity = 123/174 (70.69%), Postives = 132/174 (75.86%), Query Frame = -3
Query: 4 KSIGEALDAIDRDVVRQFTAIAAKASINMEVVKIALEKLRPPNLPDMAAVPSGAFELPRSSYVERAAVQEVADGLTAPEDPRAPYIVVGMGGGGKSVLASAVVRKPSVREHFRGGIIWLRVGRGAKNSLLALLQGLAREIGAAPTDTPHGVPHVLDSLEQVKQHLGTVASTGTS 525
K + + L I DV R AIAAK + PP+LPDMA VP GA ELP SSYVERAAVQEVADGLT PE+PR PY VVG+GGGGKSVLASAVVR PSVREHFRGGI W+RVGRGAKNSLL LLQGLARE+GAAPTD PHGVPH LDSLEQV+QHL VAST S
Sbjct: 7 KKLEKKLQEIGGDVCRVVDAIAAKRIFT---------DILPPSLPDMAEVPVGALELPHSSYVERAAVQEVADGLTNPEEPRTPYTVVGIGGGGKSVLASAVVRMPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNS 171
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 223 bits (568), Expect = 3.280e-64 Identity = 119/183 (65.03%), Postives = 137/183 (74.86%), Query Frame = -3
Query: 4 KRVNRGTQHKSIGEALDAIDRDVVRQFTAIAAKASINMEVVKIALEKLRPPNLPDMAAVPSGAFELPRSSYVERAAVQEVADGLTAPEDPRAPYIVVGMGGGGKSVLASAVVRKPSVREHFRGGIIWLRVGRGAKNSLLALLQGLAREIGAAPTDTPHGVPHVLDSLEQVKQHLGTVASTGTS 552
K + R ++HK + + L ID DV R AI+AK + + PP+LPDMA VP+ A L S YVERAAV++VADG+T PE+PRAPY V GMGGGGKSVLASAVVRK SVREHFRGGI WL VGRGAK LL LLQGL ++GAAPTDTPHGVPHVLDSLEQV++HLG VASTGTS
Sbjct: 90 KSITRCSRHKELEKQLQGIDGDVRRVLDAISAKGATGTVL---------PPSLPDMAKVPAEAVALSDSLYVERAAVRKVADGITNPEEPRAPYTVFGMGGGGKSVLASAVVRKSSVREHFRGGIFWLTVGRGAKKRLLPLLQGLTGDMGAAPTDTPHGVPHVLDSLEQVQRHLGAVASTGTS 263
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 222 bits (565), Expect = 1.110e-63 Identity = 117/141 (82.98%), Postives = 124/141 (87.94%), Query Frame = -3
Query: 4 ALEKLRPPNLPDMAAVPSGAFELPRSSYVERAAVQEVADGLTAPEDPRAPYIVVGMGGGGKSVLASAVVRKPSVREHFRGGIIWLRVGRGAKNSLLALLQGLAREIGAAPTDTPHGVPHVLDSLEQVKQHLGTV-ASTGTS 423
AL LRPP L DMAAVP+GA +LPR YVERAAVQEVADGLTAPE+PRAPY VVG+GGGGKSVLASAVVRKPSVREHFRGGI W+RVGRGAKNSLL LLQGLARE+G APTD PH VP VLDSLEQV+QHL V ASTGTS
Sbjct: 205 ALPSLRPPRLLDMAAVPAGALDLPRG-YVERAAVQEVADGLTAPEEPRAPYTVVGLGGGGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTS 344
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 206 bits (525), Expect = 1.130e-60 Identity = 104/128 (81.25%), Postives = 115/128 (89.84%), Query Frame = -3
Query: 4 MAAVPSGAFELPRSSYVERAAVQEVADGLTAPEDPRAPYIVVGMGGGGKSVLASAVVRKPSVREHFRGGIIWLRVGRGAKNSLLALLQGLAREIGAAPTDTPHGVPHVLDSLEQVKQHLGTVASTGTS 387
MAAVP+GA LP+S YVERAAVQEVADGL PE+PRAPY VVGMGGGGK++L SAVVRK +VREHFRGG+ W+RVGR AKNSLL+LLQGLARE+ AAPTDTPHGVPHVL+SLEQVKQHL TVAS GTS
Sbjct: 1 MAAVPAGALTLPQS-YVERAAVQEVADGLIKPEEPRAPYAVVGMGGGGKTMLVSAVVRKSNVREHFRGGVFWMRVGRHAKNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTS 127
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 185 bits (469), Expect = 8.480e-51 Identity = 121/279 (43.37%), Postives = 139/279 (49.82%), Query Frame = -3
Query: 4 KRVNRGTQHKSIGEALDAIDRDVVRQFTAIAAKASINM----------------------------------------------------EVVKIALEKLR--------------------------------------------PPNLPDMAAVPSGAFELPRSSYVERAAVQEVADGLTAPEDPRAPYIVVGMGGGGKSVLASAVVRKPSVREHFRGGIIWLRVGRGAKNSLLALLQGLAREIGAAPTDTPHGVPHVLDSLEQVKQHLGTVASTGTS 552
K+VNRGTQHKSI E LDAID++ + F IA K+SI+ EVV + L+ L+ PP LP AAVP+GA LPRS YVER VQE L PE APY++VGMGGGGK+VLASA+VRK SV EHFRGGI W+ +GRGA SLL LQGLARE+GAAPTD PHGVPHV DSLEQV QHL V S G+S
Sbjct: 86 KKVNRGTQHKSIEEDLDAIDKEARQLFGIIATKSSIDTRKTIKQILELQRGPNTVGTPVAIAGGVFAALLVAFAAVILSHRNEISHIDMGEVVGLVLQDLQLEGVRITFASHVSIVAVFGALLVVSSAVIWAQRKAFSTMIRDVLPPTLPQRAAVPTGALALPRS-YVERPGVQEAMGDLMDPEKALAPYMIVGMGGGGKTVLASALVRKSSVLEHFRGGIFWMEMGRGANKSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSS 363
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Match: A0A6H5KQU6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU6_9PHAE) HSP 1 Score: 148 bits (374), Expect = 3.380e-38 Identity = 87/181 (48.07%), Postives = 108/181 (59.67%), Query Frame = -3
Query: 4 VNRGTQHKSIGEALDAIDRDVVRQFTAIAAKASINMEVVKIALEKLRPPNLPDMAAVPSGAFELPRSSYVERAAVQEVADGLTAPEDPRAPYIVVGMGGGGKSVLASAVVRKPSVREHFRGGIIWLRVGRGAKNSLLALLQGLAREIGAAPTDTPHGVPHVLDSLEQVKQHLGTVASTGTS 546
R ++ + L+ IDR+V R +L + AAVP+GA LP YV R+ V++ +GL E+P AP++VVGM G GK+VL SAVVR VREHF GGI W+RVGRGAK SLL L+Q LARE+GA HGVP+VLD LEQV QH+ VASTGTS
Sbjct: 65 TTRAANYEHVESKLEEIDREVARS-------------------------SLSNRAAVPAGAHGLPHY-YVARSVVRKAVEGLINAEEPSAPFVVVGMSGAGKTVLVSAVVRHLRVREHFHGGIFWMRVGRGAKTSLLPLMQTLAREMGA------HGVPYVLDGLEQVGQHVAAVASTGTS 213
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Match: A0A6H5KFQ0_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ0_9PHAE) HSP 1 Score: 138 bits (348), Expect = 1.360e-35 Identity = 101/241 (41.91%), Postives = 118/241 (48.96%), Query Frame = -3
Query: 28 KRVNRGTQHKSIGEALDAIDRDVVRQFTAIAAKASI-NMEVVKIALEKLR--------------------------------------PPNL------------PDMAAVPSGA------------FELPRSSYVERAAVQEV---ADGLTAPEDPRAPYIVVGMGGGGKSVLASAVVRKPSVREHFRGGIIWLRVGRGAKNSLLALLQGLAREIGAAPTDTPHGVPHVLDSLEQVKQHLG 552
K+VNRGTQHKSI E LDAID ++ TAIAAK+SI N + ++ L+ L+ P ++ PD V G + +R AV + ADG PE AP VVGMGGGGK+VLASA+VR PSVREHF GGI W+ VGR K SL LLQ LAREI APTD PHGVPH LD LEQV G
Sbjct: 87 KKVNRGTQHKSIEEDLDAIDGQALQLITAIAAKSSIGNSKAIRQILQDLKLEGRRVSGGSTLLVAGGVFGAVFVEIAALALAHRDGEAPVDVFEAVELVLRDFGPDGLRVSDGTQLFVVGLIGALVVAFGAVTTAQRNAVFSMIRAADGPINPETALAPSTVVGMGGGGKTVLASAIVRDPSVREHFLGGISWVSVGRNGKRSLPPLLQTLAREITTAPTDAPHGVPHALDGLEQVVTRCG 327 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14132.2449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14132.2449.1 >prot_E-siliculosus-1a_F_contig14132.2449.1 ID=prot_E-siliculosus-1a_F_contig14132.2449.1|Name=mRNA_E-siliculosus-1a_F_contig14132.2449.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=124bp SGGARGCHCAQVLLNLLQAVQDVRHPVRSIRRCCAYLPGQALEESQEAVLback to top mRNA from alignment at E-siliculosus-1a_F_contig14132:589..1142+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14132.2449.1 ID=mRNA_E-siliculosus-1a_F_contig14132.2449.1|Name=mRNA_E-siliculosus-1a_F_contig14132.2449.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14132:589..1142+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14132:589..1142+ >mRNA_E-siliculosus-1a_F_contig14132.2449.1 ID=mRNA_E-siliculosus-1a_F_contig14132.2449.1|Name=mRNA_E-siliculosus-1a_F_contig14132.2449.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14132:589..1142+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |