mRNA_E-siliculosus-1a_F_contig1412.2442.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE) HSP 1 Score: 433 bits (1114), Expect = 8.870e-145 Identity = 216/225 (96.00%), Postives = 218/225 (96.89%), Query Frame = 1
Query: 1 MYVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVAELYHATVSKFSYSIRQAITGAGGAVLHANFDPWTSKLSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSEQLSDILLIWVQEVLKEFGLDTNHRFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNPGARQVIDTVKKVVEHLNKSTLMKVR 675
MYVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFV ELY ATVSKFSYSIR+AITGAGGAVLHANFD WTSK SNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSS+QLSDILLIWVQEVLKEFGLDTNH FCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKN GARQVIDTVKKVVEHLNKSTLMK R
Sbjct: 172 MYVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVVELYDATVSKFSYSIRKAITGAGGAVLHANFDLWTSKWSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSKQLSDILLIWVQEVLKEFGLDTNHLFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNLGARQVIDTVKKVVEHLNKSTLMKAR 396
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Match: A0A2V3ILY8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILY8_9FLOR) HSP 1 Score: 166 bits (420), Expect = 2.040e-47 Identity = 81/216 (37.50%), Postives = 129/216 (59.72%), Query Frame = 1
Query: 22 ISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVAELYHATVSKFSYSIRQAITGAGGAVLHANFDPWTSKLSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSEQLSDILLIWVQEVLKEFGLDTNHRFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNPGARQVIDTVKKVVEHLNKSTLMK 669
+ L FS+ + R F V + + + L P I+ V ++Y T S +R+ I+ A LH N + WTS+LS +++ G++LF+ + + + + L+AV+ F PS +L LSDIL +W +++ EF + + + +D GSDVKRLC ++ +WEWC PHMLNCVLV AFGT + +N GAR+++ +KKV+ H+NKS++MK
Sbjct: 20 VKKFLPFSMVSFSEFRTFIGVLDQKSELNNQLQPGSIRKLVVKIYIGTTSSLMKKLRKEISVTPLAFLHINVNLWTSRLSKDRFFGIQLFYVSREWEVKAVLLAVRHFCPSGNLLPGRSLSDILQLWTNKIILEFNVSYDKILSSTSDTGSDVKRLCSVLIPESWEWCLPHMLNCVLVGAFGTGLNCVNIRNNGARRLLKDLKKVIRHVNKSSVMK 235
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Match: A0A6H5KWS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS6_9PHAE) HSP 1 Score: 169 bits (429), Expect = 9.790e-47 Identity = 91/222 (40.99%), Postives = 132/222 (59.46%), Query Frame = 1
Query: 4 YVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVAELYHATVSKFSYSIRQAITGAGGAVLHANFDPWTSKLSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSEQLSDILLIWVQEVLKEFGLDTNHRFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNPGARQVIDTVKKVVEHLNKSTLMK 669
+VK +I S + + VRA ++ FP + ++ + +K V E+Y AT S+F + I G +LH + D W K S+ KY+G+ LF+ T+VL S L+AV+ F P+ +L +LS ++ ++ VL+E+GLD + F +D+GSDVKRLC +L WEWC HM+NC LVEAFGT+ A +NPGAR+VI KKVVEH+ KS K
Sbjct: 167 WVKCNMIEGFCPVSHGEKEWVRASLKLTALKNFPITGIHNEAVKQMVVEMYAATASQFKMEMAAQIGGM--RLLHLSLDLWVDKFSSLKYVGIPLFYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSALVQKHLESVLEEYGLDVSLVFSATSDSGSDVKRLCDVLLPGLWEWCVCHMINCALVEAFGTHVDSAKSRNPGARKVITMGKKVVEHIPKSPRAK 386
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Match: A0A6H5KEC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC8_9PHAE) HSP 1 Score: 156 bits (395), Expect = 3.560e-43 Identity = 84/203 (41.38%), Postives = 119/203 (58.62%), Query Frame = 1
Query: 4 YVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVAELYHATVSKFSYSIRQAITGAGGAVLHANFDPWTSKLSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSEQLSDILLIWVQEVLKEFGLDTNHRFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNPGARQ 612
+VK II S + + VRA ++ FP + ++ + +K V E+Y AT S+F + I G +LH N D W K S+ KYIG+RLF+ T+VL S L+AV+ F P+ +L +LS +L +++ VL+E+GLD + F +DAGSDVKRLC +L WEWC HM+NC LVEAFGT+ + A NP Q
Sbjct: 14 WVKCNIIQGFCPLSHGEKEWVRASLQLTALKNFPITGIHNKAVKQMVVEMYAATASQFKMEMAAQIGGM--RLLHLNLDLWVDKFSSLKYIGIRLFYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMINCALVEAFGTHVNPAKSINPRCTQ 214
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 163 bits (413), Expect = 6.200e-43 Identity = 91/222 (40.99%), Postives = 125/222 (56.31%), Query Frame = 1
Query: 4 YVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVAELYHATVSKFSYSIRQAITGAGGAVLHANFDPWTSKLSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSEQLSDILLIWVQEVLKEFGLDTNHRFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNPGARQVIDTVKKVVEHLNKSTLMK 669
+VK II S + + VRA ++ FP + ++ + +K + G +LH N D W K S+ KYIG+RLF+ T+VL S L+AV+ F P+ +L +LS +L +++ VL+E+GLD + F +DAGSDVKRLC +L WEWC HM+NC LVEAFGT+ A NPGAR+VI TVKKVVEH+ KS K
Sbjct: 112 WVKCNIIEGFCPLSHGEKEWVRASLKLTALKNFPITGIHNKAVKQMIG---------------------GMRLLHHNLDLWVDKFSSLKYIGIRLFYADRTWVLRSRLIAVRQFNPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGLWEWCVCHMINCALVEAFGTHVDPAKSGNPGARKVITTVKKVVEHIRKSPRAK 312
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Match: D7G3L2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L2_ECTSI) HSP 1 Score: 127 bits (319), Expect = 2.030e-30 Identity = 73/225 (32.44%), Postives = 121/225 (53.78%), Query Frame = 1
Query: 4 YVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVAELYHATVSKFSYSIRQAITGAGGAVLHANFDPWTSKLSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSEQLSDILLIWVQEVLKEFGLDTNHRFCTVTDAGSDVKRLCLKVLTSAW--EWCFPHMLNCVLVEAFGTNASRAACKNPGARQVIDTVKKVVEHLNKSTLMKV 672
YVK + I F+ + VR + + +D F + + + +K +AE+YHAT +F+ S+++ + A +L+ N D WTS +S KYIG+R+F+ + + L+A++ F+P Q D++ WV++VL + G+ VTDAGSDV+ K ++ AW EWC PH LN ++ G + KNP R +++ +K +V H NKS K+
Sbjct: 75 YVKAYPIDSAEPFNRVERSSVRRLYSLLNKD-FDVTGINNKAVKKVIAEMYHATTQEFNASMQKTLRNATIPILYVNCDLWTSHVSGLKYIGVRVFYLDEKMNVKTHLLAIRGFRPPG-----AQTGDVVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVR----KGVSQAWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKI 289
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE) HSP 1 Score: 122 bits (307), Expect = 8.790e-30 Identity = 75/215 (34.88%), Postives = 112/215 (52.09%), Query Frame = 1
Query: 49 SDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVAELYHATVSKFSYSIRQAITGAGGAVLHANFDPWTSKLSNEKYIGLRLFWCTSTFVLDSAL--VAVKLFQPSADLTSSEQLSDILLIWVQEVLKEFGLDTNHRFCTVTDAGSDVKRLCLKVLTS----AWEWCFPHMLNCVLVEAFGTNASRAACKNPGARQVIDTVKKVVEHLNKSTLMKVR 675
S ++R + + FP L P+ +KH + ELY AT ++ + + A VLH D WT K S K++G+ L++ T++F + AL V VK + P S + S++LL V+ +L E GL + TD+GSDVK + + L W WC HM+ +AFG + KNPGAR VI V KVVE+LNKS+ ++ +
Sbjct: 55 SSGDELRTLLALIGDSDFPP--LRPRRVKHLLTELYVATKKVVVGNMLEEVRKAPLPVLHHMIDIWTEKGSGRKFLGVHLYYVTASFEMKHALLCVGVKRYSPDQGALSEARASEVLLEIVKSILVEVGLSPSDLASGTTDSGSDVKAVSVNGLHPHYGVLWNWCACHMMVKAAEQAFGVHPDPTKSKNPGARDVIKVVIKVVENLNKSSYLRAK 267
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI) HSP 1 Score: 124 bits (312), Expect = 4.160e-29 Identity = 71/225 (31.56%), Postives = 121/225 (53.78%), Query Frame = 1
Query: 4 YVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVAELYHATVSKFSYSIRQAITGAGGAVLHANFDPWTSKLSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSEQLSDILLIWVQEVLKEFGLDTNHRFCTVTDAGSDVKRLCLKVLTSAW--EWCFPHMLNCVLVEAFGTNASRAACKNPGARQVIDTVKKVVEHLNKSTLMKV 672
YVK + I F+ ++ VR + + +D F + + + +K +A++YH T +F+ S+++ + A +L+ N D WTS +S KYIG+R+F+ + + L+A++ F+P Q D++ WV++VL + G+ VTDAGSDV+ K ++ AW EWC PH LN ++ G + KNP R +++ +K +V H NKS K+
Sbjct: 75 YVKAYPIDSAEPFNRAERASVRRLYSLLNKD-FDVTGINNKAVKKVIAKMYHVTTREFNASMQKTLRNATIPILYVNCDLWTSHVSGLKYIGVRVFYLDEKMNVKTHLLAIRGFRPPG-----AQTGDVVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVR----KGVSQAWPWEWCLPHALNRATIDGTGMTQVKEKSKNPLCRDLLELIKGIVGHFNKSAADKI 289
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE) HSP 1 Score: 124 bits (310), Expect = 7.950e-29 Identity = 74/228 (32.46%), Postives = 120/228 (52.63%), Query Frame = 1
Query: 4 YVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQ---MIKHFVAELYHATVSKFSYSIRQAITGAGGAVLHANFDPWTSKLSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPS--ADLTSSEQLSDILLIWVQEVLKEFGLDTNHRFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNPGARQVIDTVKKVVEHLNKSTLMKV 672
+ K FII AFSL+D VR C D + + + IK + E+Y AT F+ + + + A +L+ N D WTS++S EKYIG+R+ + V+ S ++ VKLF+P + + ++L W +VL + GL + V+D+GSDV K EWC PHM+N V ++ G + S A+ KN R +++ +KK+++H N+S+ K+
Sbjct: 211 FTKAFIIHAGCAFSLADHDRVRRCLATMCPDHLDVAAINARGATCIKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIGVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSGSDVSTGIAKAFRR--EWCIPHMINRVTIDGTGMSNSPASSKNHLCRDLLEKMKKIIQHFNRSSGDKI 436
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE) HSP 1 Score: 124 bits (310), Expect = 8.110e-29 Identity = 74/228 (32.46%), Postives = 120/228 (52.63%), Query Frame = 1
Query: 4 YVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQ---MIKHFVAELYHATVSKFSYSIRQAITGAGGAVLHANFDPWTSKLSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPS--ADLTSSEQLSDILLIWVQEVLKEFGLDTNHRFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRAACKNPGARQVIDTVKKVVEHLNKSTLMKV 672
+ K FII AFSL+D VR C D + + + IK + E+Y AT F+ + + + A +L+ N D WTS++S EKYIG+R+ + V+ S ++ VKLF+P + + ++L W +VL + GL + V+D+GSDV K EWC PHM+N V ++ G + S A+ KN R +++ +KK+++H N+S+ K+
Sbjct: 132 FTKAFIIHAGCAFSLADHDRVRRCLATMCPDHLDVAAINARGATCIKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIGVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSGSDVSTGIAKAFRR--EWCIPHMINRVTIDGTGMSNSPASSKNHLCRDLLEKMKKIIQHFNRSSGDKI 357 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1412.2442.1 >prot_E-siliculosus-1a_F_contig1412.2442.1 ID=prot_E-siliculosus-1a_F_contig1412.2442.1|Name=mRNA_E-siliculosus-1a_F_contig1412.2442.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=230bp MYVKVFIISHLLAFSLSDSQDVRAFFEVCCEDTFPKSTLYPQMIKHFVAEback to top mRNA from alignment at E-siliculosus-1a_F_contig1412:29401..31281+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1412.2442.1 ID=mRNA_E-siliculosus-1a_F_contig1412.2442.1|Name=mRNA_E-siliculosus-1a_F_contig1412.2442.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1881bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1412:29401..31281+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1412:29401..31281+ >mRNA_E-siliculosus-1a_F_contig1412.2442.1 ID=mRNA_E-siliculosus-1a_F_contig1412.2442.1|Name=mRNA_E-siliculosus-1a_F_contig1412.2442.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1380bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1412:29401..31281+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |