mRNA_E-siliculosus-1a_F_contig1412.2441.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2441.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE) HSP 1 Score: 374 bits (960), Expect = 5.300e-120 Identity = 198/395 (50.13%), Postives = 262/395 (66.33%), Query Frame = 3
Query: 9 AMAKVLKGIVSVLVVAACAGDHPTKVRLAETSFEPALEPRRVNFDLDVRDTSVQRKSDVSLSTVANDGLNTRLLEEPHEETSIRPIDRPFVYTPGPSAMGKQYTGVSLLSLGEPKSATTWMGRLVPALAIEICGSHNNPWCQVGALVVHDNVPAPCYEFELLLNRTTDGIDHTELFLHFYGRHKHKIPGISHNLPPECRNGGRIHGDTFMDLPPCESDEPPTRELLTSCLWDTSPSCTQRMSMVRPSVR-SLVIMRDPRSVVLSEYKMRSKLGRKPAGVGNRSLDEFIKWKFEVLVSWMHQRYMWHTGLLMERSSHVVIYEDLQESHVGFIAIAAFMGLECSETQAGKVWEAHRQRSRDGGYNTYGLPVDTIRWMNTTMATLLPPVLALRWEVQP 1190
AM +L+ +V V V AC G + R+ ET E A+ RR+N + + ++ +V D N P E SI+P+ PF P G++ G+SL++LGEPKS TTW+GR+VP+LAIE+CGS NNPWCQ+G + V + PAP YEFELL T G LFLHF GR KH IPG+ +P +CRNGGR+H + FMDL PC+S E PTRE L SCLW+T+ C M+ P+VR S+V+ RDPR VV+SEYKMR+++ + + + SL+EF+++KFEVLVSW+HQRYMWHTG LM SSHV Y++LQ+S VGF+ IA MGLECSE QA KVW+AH+Q S +GG+ T L TI++MN TMA LLPP +A++W + P
Sbjct: 12 AMGTILRRLVLVCVATACTGRDSSDPRVPETEAE-AMPGRRMNHPARIH---ARNAKILAQQSVLRDQANITAEPVPEEADSIKPVAIPFKQKP--DEFGERGHGLSLVALGEPKSGTTWLGRMVPSLAIELCGSENNPWCQLGGVEVFPHPPAPSYEFELLNISTPTG--RPRLFLHFQGRIKHIIPGMDLGIPLKCRNGGRLHKEGFMDLQPCDSGESPTRERLESCLWNTTKRCVNYMTSTDPAVRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGLTP 397
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2441.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE) HSP 1 Score: 345 bits (885), Expect = 2.700e-110 Identity = 168/280 (60.00%), Postives = 202/280 (72.14%), Query Frame = 3
Query: 354 SATTWMGRLVPALAIEICGSHNNPWCQVGALVVHDNVPAPCYEFELLLNRTTDGIDHTELFLHFYGRHKHKIPGISHNLPPECRNGGRIHGDTFMDLPPCESDEPPTRELLTSCLWDTSPSCTQRMSMVRPSVR-SLVIMRDPRSVVLSEYKMRSKLGRKPAGVGNRSLDEFIKWKFEVLVSWMHQRYMWHTGLLMERSSHVVIYEDLQESHVGFIAIAAFMGLECSETQAGKVWEAHRQRSRDGGYNTYGLPVDTIRWMNTTMATLLPPVLALRWEVQP 1190
S TTW+GR+VPALA+E+CGS NN WCQVG + + + PA +EFELL R G ELFLHF G HKH IPG+ +P CRNGGR+H D F+DL PC SDE PTR+ L SCL+DTS SC + M P+VR S+VIMRDPR+VV+SEY MR+++ + SLDEFI WKFEVLVSW+HQRYMWHTG LM SSH+ +YE+LQ SH+G I IA FMGL+CSE QA KVW R S GGY + GL V+T+ +MN TMA LLPP LALRW+V P
Sbjct: 17 SGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELL-KRNIGGSGSPELFLHFKGIHKHIIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSASCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRTFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTP 295
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2441.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE) HSP 1 Score: 326 bits (836), Expect = 7.880e-101 Identity = 169/323 (52.32%), Postives = 217/323 (67.18%), Query Frame = 3
Query: 243 EETSIRPIDRPFVYTPGPSAMGKQY--TGVSLLSLGEPKSATTWMGRLVPALAIEICGSHNNPWCQVGALVVHDNVPAPCYEFELLLNRTTDGIDHTELFLHFYGRHKHKIPGISHNLPPECRNGGRIHGDTFMDLPPC-ESDEPPTRELLTSCLWDTSPSCTQRMSMVRPSVR-SLVIMRDPRSVVLSEYKMRSKLGRKPAGVGNRSLDEFIKWKFEVLVSWMHQRYMWHTGLLMERSSHVVIYEDLQESHVGFIAIAAFMGLECSETQAGKVWEAHRQRSRDGGYNTYGLPVDTIRWMNTTMATLLPPVLALRWEVQPMNV 1199
E++SI+PID PF+ PG G Q G+S+ + GEPKS TTW+GRLVP LA+ +CG+ NN WC +G L V DN+PAP Y FE++ +G LFLHF G KH IPG+ P C NGGR H + F D PPC + +E PTRE L +CL++TS C Q M+ V P VR S+VI+RDPR V +SE +MR K R+PA + + D F + +FE+LVSW HQRY+WHT +M SSHVV YEDL++ H GFI +A FMGL CSE A +VW AHR + G Y+T+GL ++TI+WMN TMA LLPP LA RW V P ++
Sbjct: 136 EKSSIQPIDIPFLQEPG----GWQLPGNGISMDATGEPKSGTTWLGRLVPDLALHLCGNANNSWCGMGGLAVLDNLPAPKYVFEMVNKTAGEGA----LFLHFDGNGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEETPTRERLRACLFNTSALCVQYMASVDPDVRRSMVIIRDPRDVAMSEREMRIKYYREPAWIRKTTPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTPTDL 450
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2441.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI) HSP 1 Score: 320 bits (819), Expect = 3.300e-99 Identity = 171/339 (50.44%), Postives = 220/339 (64.90%), Query Frame = 3
Query: 195 TVANDGLNTRLLEEPHEETSIRPIDRPFVYTPGPSAMGKQY--TGVSLLSLGEPKSATTWMGRLVPALAIEICGSHNNPWCQVGALVVHDNVPAPCYEFELLLNRTTDGIDHTELFLHFYGRHKHKIPGISHNLPPECRNGGRIHGDTFMDLPPC-ESDEPPTRELLTSCLWDTSPSCTQRMSMVRPSVR-SLVIMRDPRSVVLSEYKMRSKLGRKPAGVGNRSLDEFIKWKFEVLVSWMHQRYMWHTGLLMERSSHVVIYEDLQESHVGFIAIAAFMGLECSETQAGKVWEAHRQRSRDGGYNTYGLPVDTIRWMNTTMATLLPPVLALRWEVQPMNV 1199
+ +NDG + L E +SI+ ID P + PG G Q G+S+ + GEPKS TTW+GRLVP LA+ +CG+ NN WC +G LVV DN+PAP Y FE++ +G LFLHF G KH IPG+ P C NGGR H + F D PPC + ++ PTRE L +CL++TS C Q M V P VR S+VI+RDPR V +SE +MR K R PA + + D F + +FE+LVSW HQRY+WHT +M SSHVV YEDL++ H GFI +A FMGL CSE A +VW AHR + G Y+T+GL +T++WMN TMA LLPP LALRW V P ++
Sbjct: 57 SASNDGDHQPELPE---MSSIQLIDTPLLQEPG----GWQLPGNGISMDATGEPKSGTTWLGRLVPDLALHLCGNANNSWCGMGGLVVLDNIPAPKYVFEMVNKTAGEGA----LFLHFDGNGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEDTPTRERLRACLFNTSALCVQYMPSVDPDVRRSMVIIRDPRDVAMSEREMRMKYYRDPAWIRKATPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTPTDL 384
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2441.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE) HSP 1 Score: 243 bits (619), Expect = 5.660e-71 Identity = 135/301 (44.85%), Postives = 177/301 (58.80%), Query Frame = 3
Query: 381 VPALAIEICGSHNNPWCQVGALVVHDNVPAPCYEFELLLNRTTDGIDHTELFLHFYGRHKHKIPGISHNLPPE-CRNGGRIHGDTFMDLPPCESDEPPTRELLTSCLWDTSPSCTQRMSMV-RPSVRSLVIMRDPRSVVLSEYKMRSKLGRKPAGVGNRSLDEFIKWKFEVLVSWMHQRYMWHTGLLMERSSHVVIYEDLQ-----------------------------ESHVGFIAIAAFMGLECSETQAGKVWEAHRQRSRDGGYNTYGLPVDTIRWMNTTMATLLPPVLALRWEVQP 1190
+P LA+E+CGS N WC++G L V+ + P+P YEFELL T +G T LFLH+ G +KH IPG+S PE C GGR H + F D PPC S TRE LT CLW+TS C M V S R+ V++RDPR VVLSE++MR + V S+D+FI +F+ +VSW HQR++WHT ++ SSHV+ Y+DLQ + +G I +AAFMGLECSE QA VWE+H+ G Y T+GL + TI WMN TMA+LLP ++L W + P
Sbjct: 1 MPQLALELCGSSTNTWCEMGGLAVYPSEPSPWYEFELLKRGTGEGSGPT-LFLHYKGSNKHVIPGMSWKGHPEGCNQGGRRHRNFFEDYPPCISGPASTREQLTGCLWNTSSRC---MGFVPSESRRTAVMLRDPRDVVLSEFRMRRDYYHQEE-VMAISVDDFIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTP 296
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2441.1 vs. uniprot
Match: D8LSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW1_ECTSI) HSP 1 Score: 191 bits (484), Expect = 1.980e-53 Identity = 90/154 (58.44%), Postives = 108/154 (70.13%), Query Frame = 3
Query: 294 PSAMGKQYTGVSLLSLGEPKSATTWMGRLVPALAIEICGSHNNPWCQVGALVVHDNVPAPCYEFELLLNRTTDGIDHTELFLHFYGRHKHKIPGISHNLPPECRNGGRIHGDTFMDLPPCESDEPPTRELLTSCLWDTSPSCTQRMSMVRPSVR 755
P GK G+SL +LGEPKS TTW+GR+VPALA+E+CGS NN WCQVG + + + PA +EFELL R DG ELFLHF G HKH IPG+ +P CRNGGR+H D F+DL PC SDE PTR+ L SCL+DTSPSC + M P+VR
Sbjct: 4 PDGFGKPGQGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELL-KRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVR 156 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1412.2441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1412.2441.1 >prot_E-siliculosus-1a_F_contig1412.2441.1 ID=prot_E-siliculosus-1a_F_contig1412.2441.1|Name=mRNA_E-siliculosus-1a_F_contig1412.2441.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=398bp MAKVLKGIVSVLVVAACAGDHPTKVRLAETSFEPALEPRRVNFDLDVRDTback to top mRNA from alignment at E-siliculosus-1a_F_contig1412:8210..21229- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1412.2441.1 ID=mRNA_E-siliculosus-1a_F_contig1412.2441.1|Name=mRNA_E-siliculosus-1a_F_contig1412.2441.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=13020bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1412:8210..21229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1412:8210..21229- >mRNA_E-siliculosus-1a_F_contig1412.2441.1 ID=mRNA_E-siliculosus-1a_F_contig1412.2441.1|Name=mRNA_E-siliculosus-1a_F_contig1412.2441.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2388bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1412:8210..21229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |