mRNA_E-siliculosus-1a_F_contig14113.2439.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14113.2439.1
Unique NamemRNA_E-siliculosus-1a_F_contig14113.2439.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: D7G3X7_ECTSI (MFS family transporter: sugar n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X7_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.060e-40
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1
Query:    4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
            NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVAS+GREDAFTLAILGWLACGTMLLAMALTVHRDEQKV
Sbjct:  178 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASRGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 248          
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A6H5KP69_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP69_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.240e-38
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1
Query:    4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
            NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVAS+GREDAFTLAILGWLACGTMLLAMALTVHRDEQKV
Sbjct:  388 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASRGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 458          
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S2YSC7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSC7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.120e-17
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 RNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVS-LVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
            +NV LP  RG AF +FN+FDDLGKGLGP  V+ L+V   GR  AF + +LGW  CG   L ++ TV  DEQKV
Sbjct:   54 QNVCLPQHRGQAFALFNLFDDLGKGLGPVFVAFLIVQLGGRLPAFNVTVLGWAVCGIFNLGISFTVSADEQKV 126          
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A448ZEQ4_9STRA (MFS domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.150e-17
Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSL-VVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
            NVTLP  RG AF +FN+FDDLGKGLGP +VSL +V   GR  AF   +LGW+ CG   LAM  TV RDE+ V
Sbjct:  461 NVTLPRARGQAFALFNLFDDLGKGLGPYLVSLLIVGCGGRRAAFNTGVLGWVLCGVANLAMFFTVARDERAV 532          
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S3R0Z2_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R0Z2_DUNTE)

HSP 1 Score: 79.3 bits (194), Expect = 1.250e-16
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDE 207
            NV  P  RG AF +  V DDLGKGLGPA+V++V+   GR  AF +A LGW+ CG +LL++A T+ +DE
Sbjct:   73 NVNEPEVRGVAFALQTVTDDLGKGLGPAVVAVVINLVGRRSAFNIATLGWIPCGLLLLSLAFTMRKDE 140          
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S1JBL5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JBL5_9EUGL)

HSP 1 Score: 76.3 bits (186), Expect = 1.970e-16
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
            N  LP  RGT FG+F + DD+GKG GP + + +++S GR  AFT     W  C  +LLAMALT+ +DE+++
Sbjct:   24 NCNLPEARGTVFGIFCIMDDVGKGFGPFLAAWMISSYGRRGAFTKCTWLWAVCAVLLLAMALTLEKDEKRM 94          
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A1E7ENH1_9STRA (MFS family transporter: metabolite n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENH1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.420e-16
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVAS-KGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
            NVTLP+TRG AF +FNVFDD+GKGLGP  VSL++    GR  AF + +  W+ CG   L +  TV RDEQ+V
Sbjct:  365 NVTLPNTRGKAFALFNVFDDVGKGLGPYFVSLLIVKFGGRTRAFNIGVSFWILCGLANLVIFFTVVRDEQRV 436          
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S4GK10_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GK10_9EUGL)

HSP 1 Score: 78.6 bits (192), Expect = 2.330e-15
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
            NV LP TRGT FG+F V DD+GKG GP   ++++   GR  AF +    WL CG +LL +A T+ +DEQK+
Sbjct:  410 NVNLPETRGTVFGIFCVMDDVGKGFGPFFAAVLIQGLGRTVAFNICTCFWLFCGVVLLCIAFTLDKDEQKM 480          
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S4N0S4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0S4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.060e-15
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
            NVTLP +RG A  + ++ DDLGKGLGPA+VSL++ +  R+ AF L++LGW+  G +   +A  V  DE  V
Sbjct:  111 NVTLPKSRGRANSMLSIVDDLGKGLGPAIVSLIITATDRQTAFNLSLLGWIVAGVLSFLIACFVRTDENHV 181          
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S0FUK5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FUK5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.860e-15
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKG-REDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
            NVTLP TRG AF +   FDD+G+GLGP  V++++++ G R  AF +A+ GW+ CG   L +  TV RDE  V
Sbjct:   94 NVTLPKTRGQAFALQTTFDDVGRGLGPVFVAMLISNLGGRTAAFNIAVFGWILCGAFNLLLFFTVERDEAAV 165          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3X7_ECTSI2.060e-4098.59MFS family transporter: sugar n=1 Tax=Ectocarpus s... [more]
A0A6H5KP69_9PHAE4.240e-3898.59MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2YSC7_9STRA1.120e-1754.79Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A448ZEQ4_9STRA1.150e-1759.72MFS domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7S3R0Z2_DUNTE1.250e-1652.94Hypothetical protein (Fragment) n=1 Tax=Dunaliella... [more]
A0A7S1JBL5_9EUGL1.970e-1646.48Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A1E7ENH1_9STRA4.420e-1655.56MFS family transporter: metabolite n=1 Tax=Fragila... [more]
A0A7S4GK10_9EUGL2.330e-1549.30Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4N0S4_9STRA4.060e-1547.89Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S0FUK5_9STRA4.860e-1548.61Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14113contigE-siliculosus-1a_F_contig14113:121..336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size216
Model size216
Exons1
Hectar predicted targeting categorysignal anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.EGP
EggNOG OGs2QTPT@2759,COG0477@1
EggNOG free text desc.Major Facilitator Superfamily
Seed eggNOG ortholog2880.D7G3X7
Seed ortholog evalue3.4e-32
Seed ortholog score143.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927927.2045045-CDS-E-siliculosus-1a_F_contig14113:120..3361622927927.2045045-CDS-E-siliculosus-1a_F_contig14113:120..336Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14113 121..336 +
1696318740.5955083-CDS-E-siliculosus-1a_F_contig14113:120..3361696318740.5955083-CDS-E-siliculosus-1a_F_contig14113:120..336Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14113 121..336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14113.2439.1prot_E-siliculosus-1a_F_contig14113.2439.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14113 121..336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14113.2439.1

>prot_E-siliculosus-1a_F_contig14113.2439.1 ID=prot_E-siliculosus-1a_F_contig14113.2439.1|Name=mRNA_E-siliculosus-1a_F_contig14113.2439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=72bp
RNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILG
WLACGTMLLAMALTVHRDEQKV
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mRNA from alignment at E-siliculosus-1a_F_contig14113:121..336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14113.2439.1 ID=mRNA_E-siliculosus-1a_F_contig14113.2439.1|Name=mRNA_E-siliculosus-1a_F_contig14113.2439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14113:121..336+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGAACGTCACCCTTCCCTCCACGCGAGGGACAGCTTTCGGAGTCTTCAA TGTCTTCGACGACCTGGGCAAGGGCCTCGGCCCGGCAATGGTGAGCCTTG TCGTGGCGAGCAAGGGGAGGGAGGACGCCTTCACGCTGGCCATCCTTGGG TGGCTCGCCTGCGGGACGATGCTCCTGGCCATGGCTCTCACGGTACATCG CGACGAGCAAAAGGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14113:121..336+

>mRNA_E-siliculosus-1a_F_contig14113.2439.1 ID=mRNA_E-siliculosus-1a_F_contig14113.2439.1|Name=mRNA_E-siliculosus-1a_F_contig14113.2439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14113:121..336+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGAACGTCACCCTTCCCTCCACGCGAGGGACAGCTTTCGGAGTCTTCAA
TGTCTTCGACGACCTGGGCAAGGGCCTCGGCCCGGCAATGGTGAGCCTTG
TCGTGGCGAGCAAGGGGAGGGAGGACGCCTTCACGCTGGCCATCCTTGGG
TGGCTCGCCTGCGGGACGATGCTCCTGGCCATGGCTCTCACGGTACATCG
CGACGAGCAAAAGGTGAGGAACGTCACCCTTCCCTCCACGCGAGGGACAG
CTTTCGGAGTCTTCAATGTCTTCGACGACCTGGGCAAGGGCCTCGGCCCG
GCAATGGTGAGCCTTGTCGTGGCGAGCAAGGGGAGGGAGGACGCCTTCAC
GCTGGCCATCCTTGGGTGGCTCGCCTGCGGGACGATGCTCCTGGCCATGG
CTCTCACGGTACATCGCGACGAGCAAAAGGTG
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