mRNA_E-siliculosus-1a_F_contig14113.2439.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: D7G3X7_ECTSI (MFS family transporter: sugar n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X7_ECTSI) HSP 1 Score: 141 bits (356), Expect = 2.060e-40 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1
Query: 4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVAS+GREDAFTLAILGWLACGTMLLAMALTVHRDEQKV
Sbjct: 178 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASRGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 248
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A6H5KP69_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP69_9PHAE) HSP 1 Score: 141 bits (356), Expect = 4.240e-38 Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1
Query: 4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVAS+GREDAFTLAILGWLACGTMLLAMALTVHRDEQKV
Sbjct: 388 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASRGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 458
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S2YSC7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSC7_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.120e-17 Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 1 RNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVS-LVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
+NV LP RG AF +FN+FDDLGKGLGP V+ L+V GR AF + +LGW CG L ++ TV DEQKV
Sbjct: 54 QNVCLPQHRGQAFALFNLFDDLGKGLGPVFVAFLIVQLGGRLPAFNVTVLGWAVCGIFNLGISFTVSADEQKV 126
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A448ZEQ4_9STRA (MFS domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ4_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.150e-17 Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSL-VVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
NVTLP RG AF +FN+FDDLGKGLGP +VSL +V GR AF +LGW+ CG LAM TV RDE+ V
Sbjct: 461 NVTLPRARGQAFALFNLFDDLGKGLGPYLVSLLIVGCGGRRAAFNTGVLGWVLCGVANLAMFFTVARDERAV 532
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S3R0Z2_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R0Z2_DUNTE) HSP 1 Score: 79.3 bits (194), Expect = 1.250e-16 Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDE 207
NV P RG AF + V DDLGKGLGPA+V++V+ GR AF +A LGW+ CG +LL++A T+ +DE
Sbjct: 73 NVNEPEVRGVAFALQTVTDDLGKGLGPAVVAVVINLVGRRSAFNIATLGWIPCGLLLLSLAFTMRKDE 140
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S1JBL5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JBL5_9EUGL) HSP 1 Score: 76.3 bits (186), Expect = 1.970e-16 Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
N LP RGT FG+F + DD+GKG GP + + +++S GR AFT W C +LLAMALT+ +DE+++
Sbjct: 24 NCNLPEARGTVFGIFCIMDDVGKGFGPFLAAWMISSYGRRGAFTKCTWLWAVCAVLLLAMALTLEKDEKRM 94
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A1E7ENH1_9STRA (MFS family transporter: metabolite n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENH1_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.420e-16 Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVAS-KGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
NVTLP+TRG AF +FNVFDD+GKGLGP VSL++ GR AF + + W+ CG L + TV RDEQ+V
Sbjct: 365 NVTLPNTRGKAFALFNVFDDVGKGLGPYFVSLLIVKFGGRTRAFNIGVSFWILCGLANLVIFFTVVRDEQRV 436
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S4GK10_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GK10_9EUGL) HSP 1 Score: 78.6 bits (192), Expect = 2.330e-15 Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
NV LP TRGT FG+F V DD+GKG GP ++++ GR AF + WL CG +LL +A T+ +DEQK+
Sbjct: 410 NVNLPETRGTVFGIFCVMDDVGKGFGPFFAAVLIQGLGRTVAFNICTCFWLFCGVVLLCIAFTLDKDEQKM 480
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S4N0S4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0S4_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 4.060e-15 Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
NVTLP +RG A + ++ DDLGKGLGPA+VSL++ + R+ AF L++LGW+ G + +A V DE V
Sbjct: 111 NVTLPKSRGRANSMLSIVDDLGKGLGPAIVSLIITATDRQTAFNLSLLGWIVAGVLSFLIACFVRTDENHV 181
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Match: A0A7S0FUK5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FUK5_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 4.860e-15 Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 4 NVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKG-REDAFTLAILGWLACGTMLLAMALTVHRDEQKV 216
NVTLP TRG AF + FDD+G+GLGP V++++++ G R AF +A+ GW+ CG L + TV RDE V
Sbjct: 94 NVTLPKTRGQAFALQTTFDDVGRGLGPVFVAMLISNLGGRTAAFNIAVFGWILCGAFNLLLFFTVERDEAAV 165 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14113.2439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14113.2439.1 >prot_E-siliculosus-1a_F_contig14113.2439.1 ID=prot_E-siliculosus-1a_F_contig14113.2439.1|Name=mRNA_E-siliculosus-1a_F_contig14113.2439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=72bp RNVTLPSTRGTAFGVFNVFDDLGKGLGPAMVSLVVASKGREDAFTLAILGback to top mRNA from alignment at E-siliculosus-1a_F_contig14113:121..336+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14113.2439.1 ID=mRNA_E-siliculosus-1a_F_contig14113.2439.1|Name=mRNA_E-siliculosus-1a_F_contig14113.2439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14113:121..336+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14113:121..336+ >mRNA_E-siliculosus-1a_F_contig14113.2439.1 ID=mRNA_E-siliculosus-1a_F_contig14113.2439.1|Name=mRNA_E-siliculosus-1a_F_contig14113.2439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14113:121..336+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |