mRNA_E-siliculosus-1a_F_contig141.2428.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig141.2428.1
Unique NamemRNA_E-siliculosus-1a_F_contig141.2428.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Match: D8LE80_ECTSI (60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE80_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.530e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
            MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Match: A0A836CFJ6_9STRA (60S ribosomal protein L41 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.120e-25
Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGC-LADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
            MQIFVKTL   SL L+V+P +++  V A VE +EFLPAAL RL+ G+ QL+S   L  AGIEEADTLTLLL V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKTLARDSLVLDVAPTSTVGDVMAMVEDREFLPAALQRLSCGSTQLASTTTLEAAGIEEADTLTLLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Match: A0A7S4DB66_HETAK (60S ribosomal protein L41 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB66_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 4.040e-18
Identity = 61/100 (61.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
            MQIFVK   G S    VS   S+    A VE Q FLPA L+R    + QL++G LAD G+EE  T+++LL V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKDPSGRSTAYTVSKDASVEGFNAQVENQTFLPADLVRFVCESKQLTTGSLADFGVEEGVTISMLLHVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Match: A0A7S2HF29_9STRA (60S ribosomal protein L41 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF29_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.040e-18
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
            MQIF+    G S    V    S+ +VKA +E +EF+P+ L+RL +G   L  G L   G++E DT+T+LL+V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFIAGAQGPSTAYTVDSDASVESVKAMIENREFVPSELIRLVNGATALEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Match: A0A7S4T8Y9_9STRA (60S ribosomal protein L41 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8Y9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.240e-17
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
            MQIF+    G S    V    SI +VKA +E +EF+PA L+RL +G + L  G L   G++E DT+T+LL+V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   89 MQIFIAGAQGPSTAYTVDSDASIESVKAMIENKEFVPADLIRLVNGASVLEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 188
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Match: A0A7S4T995_9STRA (60S ribosomal protein L41 n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S4T995_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.490e-17
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
            MQI V +  G S    V   T++T +K+ +E QEF+P  L++L  G+A+L  G LA  G+EE + L L L++ GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   17 MQIIVNSPAGTSTAYAVEATTTVTDLKSMIENQEFIPGHLIKLVSGDAELLEGTLAGNGVEEDEELDLCLEIAGGMRAKWRKKRXXXXXXXXXXXRQRAR 116
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Match: A0A6A4FFT9_9STRA (60S ribosomal protein L41 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FFT9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.190e-17
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
            MQ+FV+TL G+ L L V+   S+ +VK AVE  E++P    RL     QL+SG LAD  + E DTL +LLDV GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:  831 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIPN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 928
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Match: A0A7S0KA44_9STRA (60S ribosomal protein L41 n=2 Tax=Leptocylindrus TaxID=163515 RepID=A0A7S0KA44_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 9.590e-17
Identity = 60/101 (59.41%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQ-LSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
            MQIFV    G++   EV   TS+ ++K  VE Q F+P+ L RL   N+  L+ G LA  GIEE DT+TL+LDV GGMR KWRKK XXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVSYPQGSTRAYEVDSDTSVESLKLMVENQTFIPSGLCRLVDANSTTLTGGSLAAMGIEEDDTVTLMLDVEGGMRRKWRKKXXXXXXXXXXXXRQRAR 101
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Match: A0A6G0NVC9_9STRA (60S ribosomal protein L41 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NVC9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.310e-16
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
            MQ+FV+TL G+ L L V+   S+ +VK AVE  E++P    RL     QL+SG LAD  + E DTL +LLDV GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:  710 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIPN--FRLVCAGKQLTSGSLADYVVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 807
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Match: A0A7S1DCU7_CYCTE (60S ribosomal protein L41 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCU7_CYCTE)

HSP 1 Score: 77.4 bits (189), Expect = 1.880e-16
Identity = 57/100 (57.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
            MQIFV    G+S    V    S+  +K  +E +EF+P+ L++L +G   L  G LA  GIE  DTLT+LLDV GGMR KWRKK XXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVACADGSSTAYTVESDASVETLKLMIENKEFVPSDLIKLVNGADSLEGGSLAANGIEAEDTLTMLLDVNGGMRRKWRKKXXXXXXXXXXXXRQRAR 100
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig141.2428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE80_ECTSI1.530e-50100.0060S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CFJ6_9STRA6.120e-2571.2960S ribosomal protein L41 n=1 Tax=Tribonema minus ... [more]
A0A7S4DB66_HETAK4.040e-1861.0060S ribosomal protein L41 n=1 Tax=Heterosigma akas... [more]
A0A7S2HF29_9STRA4.040e-1857.0060S ribosomal protein L41 n=1 Tax=Helicotheca tame... [more]
A0A7S4T8Y9_9STRA1.240e-1759.0060S ribosomal protein L41 n=3 Tax=Ditylum brightwe... [more]
A0A7S4T995_9STRA2.490e-1756.0060S ribosomal protein L41 n=2 Tax=Ochrophyta TaxID... [more]
A0A6A4FFT9_9STRA5.190e-1762.0060S ribosomal protein L41 n=9 Tax=Phytophthora Tax... [more]
A0A7S0KA44_9STRA9.590e-1759.4160S ribosomal protein L41 n=2 Tax=Leptocylindrus T... [more]
A0A6G0NVC9_9STRA1.310e-1662.0060S ribosomal protein L41 n=1 Tax=Phytophthora fra... [more]
A0A7S1DCU7_CYCTE1.880e-1657.0060S ribosomal protein L41 n=1 Tax=Cyclophora tenui... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig141contigE-siliculosus-1a_F_contig141:43939..44241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size303
Model size303
Exons1
Ec32 orthologEc-00_001240.1
Ec32 ortholog descriptionRibosomal protein L41
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGsCOG5272@1,KOG0001@2759
EggNOG free text desc.ubiquitin
GOsGO:0000122,GO:0000165,GO:0000187,GO:0000209,GO:0000715,GO:0000731,GO:0000902,GO:0001666,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002755,GO:0002756,GO:0002757,GO:0002758,GO:0002764,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006296,GO:0006297,GO:0006301,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006605,GO:0006625,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007031,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007249,GO:0007254,GO:0007267,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010008,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010970,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016055,GO:0016192,GO:0016197,GO:0016310,GO:0016567,GO:0016579,GO:0017015,GO:0018130,GO:0019058,GO:0019068,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019867,GO:0019941,GO:0019985,GO:0022008,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030139,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030512,GO:0030522,GO:0030659,GO:0030666,GO:0030705,GO:0031090,GO:0031098,GO:0031145,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031347,GO:0031349,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033036,GO:0033365,GO:0033554,GO:0033674,GO:0033683,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0034643,GO:0034645,GO:0034654,GO:0035556,GO:0035666,GO:0035872,GO:0036211,GO:0036293,GO:0036294,GO:0036297,GO:0036477,GO:0042175,GO:0042176,GO:0042221,GO:0042276,GO:0042325,GO:0042327,GO:0042391,GO:0042769,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043487,GO:0043488,GO:0043549,GO:0043574,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044297,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0045088,GO:0045089,GO:0045184,GO:0045859,GO:0045860,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046794,GO:0046907,GO:0047497,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051603,GO:0051606,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0051881,GO:0055085,GO:0060255,GO:0060548,GO:0061013,GO:0061024,GO:0061136,GO:0061418,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070423,GO:0070482,GO:0070498,GO:0070555,GO:0070646,GO:0070647,GO:0070727,GO:0070848,GO:0070887,GO:0070911,GO:0070987,GO:0071310,GO:0071345,GO:0071347,GO:0071363,GO:0071453,GO:0071456,GO:0071495,GO:0071559,GO:0071560,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071900,GO:0071902,GO:0071944,GO:0072384,GO:0072594,GO:0072662,GO:0072663,GO:0075733,GO:0080090,GO:0080134,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090305,GO:0097458,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099111,GO:0120025,GO:0120036,GO:0120039,GO:0198738,GO:1901214,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902525,GO:1902527,GO:1902531,GO:1902533,GO:1902579,GO:1902679,GO:1902680,GO:1903050,GO:1903311,GO:1903320,GO:1903322,GO:1903362,GO:1903506,GO:1903507,GO:1903508,GO:1903844,GO:1903845,GO:1905114,GO:2000112,GO:2000113,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,ko03320,ko04137,ko04144,ko05012,ko05167,map03010,map03320,map04137,map04144,map05012,map05167
KEGG koko:K02927,ko:K02977,ko:K04551,ko:K08770
Preferred nameUBB
Seed eggNOG ortholog2880.D8LE80
Seed ortholog evalue3.4e-38
Seed ortholog score164.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927924.9874463-CDS-E-siliculosus-1a_F_contig141:43938..442411622927924.9874463-CDS-E-siliculosus-1a_F_contig141:43938..44241Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig141 43939..44241 -
1696318739.4352825-CDS-E-siliculosus-1a_F_contig141:43938..442411696318739.4352825-CDS-E-siliculosus-1a_F_contig141:43938..44241Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig141 43939..44241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig141.2428.1prot_E-siliculosus-1a_F_contig141.2428.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig141 43939..44241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig141.2428.1

>prot_E-siliculosus-1a_F_contig141.2428.1 ID=prot_E-siliculosus-1a_F_contig141.2428.1|Name=mRNA_E-siliculosus-1a_F_contig141.2428.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp
MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQL
SSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRMRRLRRKRRKMRQRAR
*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig141:43939..44241-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig141.2428.1 ID=mRNA_E-siliculosus-1a_F_contig141.2428.1|Name=mRNA_E-siliculosus-1a_F_contig141.2428.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=303bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig141:43939..44241- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGATCTTCGTGAAGACCCTCGGCGGGGCCAGCCTCCCCCTGGAGGT
GTCCCCCGCCACCTCCATCACGGCCGTCAAGGCCGCGGTGGAGGCGCAGG
AGTTCCTCCCCGCCGCCCTCATGCGCCTCAACCACGGCAACGCCCAGCTC
AGCTCGGGCTGCCTGGCTGACGCCGGCATCGAGGAGGCCGACACCCTGAC
CCTTCTCCTGGACGTCAGGGGCGGCATGCGCGCCAAGTGGCGCAAGAAGC
GCATGCGCCGCCTCAGGCGCAAGCGCCGCAAGATGCGCCAGCGCGCGCGT
TAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig141:43939..44241-

>mRNA_E-siliculosus-1a_F_contig141.2428.1 ID=mRNA_E-siliculosus-1a_F_contig141.2428.1|Name=mRNA_E-siliculosus-1a_F_contig141.2428.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig141:43939..44241- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGATCTTCGTGAAGACCCTCGGCGGGGCCAGCCTCCCCCTGGAGGT
GTCCCCCGCCACCTCCATCACGGCCGTCAAGGCCGCGGTGGAGGCGCAGG
AGTTCCTCCCCGCCGCCCTCATGCGCCTCAACCACGGCAACGCCCAGCTC
AGCTCGGGCTGCCTGGCTGACGCCGGCATCGAGGAGGCCGACACCCTGAC
CCTTCTCCTGGACGTCAGGGGCGGCATGCGCGCCAAGTGGCGCAAGAAGC
GCATGCGCCGCCTCAGGCGCAAGCGCCGCAAGATGCGCCAGCGCGCGCGT
TAAATGCAGATCTTCGTGAAGACCCTCGGCGGGGCCAGCCTCCCCCTGGA
GGTGTCCCCCGCCACCTCCATCACGGCCGTCAAGGCCGCGGTGGAGGCGC
AGGAGTTCCTCCCCGCCGCCCTCATGCGCCTCAACCACGGCAACGCCCAG
CTCAGCTCGGGCTGCCTGGCTGACGCCGGCATCGAGGAGGCCGACACCCT
GACCCTTCTCCTGGACGTCAGGGGCGGCATGCGCGCCAAGTGGCGCAAGA
AGCGCATGCGCCGCCTCAGGCGCAAGCGCCGCAAGATGCGCCAGCGCGCG
CGTTAA
back to top