mRNA_E-siliculosus-1a_F_contig141.2426.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig141.2426.1
Unique NamemRNA_E-siliculosus-1a_F_contig141.2426.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig141.2426.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.700e-17
Identity = 45/75 (60.00%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:  105 TSYNAGAPSNHVAGVGRGAVDFTNRSDIGPAGTPLAELGAAGPPARPARLAALL*SQIRARARGVHPDFGPAPAG 329
            ++YNAGAPSN+VAG+GRGAV FT RSDIGPA TPLAE GAAGPP  P            +      PDFGPAP G
Sbjct:   12 STYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGA----------SSGAAKDPDFGPAPVG 76
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BLAST of mRNA_E-siliculosus-1a_F_contig141.2426.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.250e-14
Identity = 47/81 (58.02%), Postives = 52/81 (64.20%), Query Frame = 3 
Query:  105 TSYNAGAPSNHVAGVGRGAVDFTNRSDIGPAGTPLAELGAAGPPARPARLAALL*SQIRARARGVHPDFGPAPAGMWPAVG 347
            +S   GAPSNHVAG+GRGAV FTNRSDIGPA T +AELGA GP  R A  A+   S+         PDFGP P    PAVG
Sbjct:   11 SSRGEGAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGP--RGATGASCGVSK--------DPDFGPVPVDTSPAVG 81
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BLAST of mRNA_E-siliculosus-1a_F_contig141.2426.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 51.6 bits (122), Expect = 3.570e-5
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 3 
Query:  111 YNAGAPSNHVAGVGRGAVDFTNRSDIGPAGTPLAELGAAGP 233
            Y +GAP+N+V G+GRGAV FT RSDIGPA  P+A  G+  P
Sbjct:   12 YASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAP 52
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BLAST of mRNA_E-siliculosus-1a_F_contig141.2426.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 9.060e-5
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 3 
Query:  111 YNAGAPSNHVAGVGRGAVDFTNRSDIGPAGTPLAELG-------------AAGPPARPA 248
            Y +GAP+N+V G+GRGAV FT RSDIGPA +PL   G              AGPP  PA
Sbjct:   12 YASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGPPA 70
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BLAST of mRNA_E-siliculosus-1a_F_contig141.2426.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)

HSP 1 Score: 49.7 bits (117), Expect = 9.660e-5
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 3 
Query:  114 NAGAPSNHVAGVGRGAVDFTNRSDIGPAGTPLAELGAAGPPARP 245
            N   PSN+VAG+GRGAV FT RSDIGPA T   + GAA  PA+P
Sbjct:   14 NVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAA--PAQP 55
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig141.2426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L0M8_9PHAE5.700e-1760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU3_9PHAE1.250e-1458.02PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
K3WCC0_GLOUD3.570e-560.98PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A5D6YDN0_9STRA9.060e-550.85Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S4D952_HETAK9.660e-563.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig141contigE-siliculosus-1a_F_contig141:39001..39837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size348
Model size350
Exons2
Ec32 orthologEc-00_001270.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927924.7582552-CDS-E-siliculosus-1a_F_contig141:39000..391201622927924.7582552-CDS-E-siliculosus-1a_F_contig141:39000..39120Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig141 39001..39120 +
1696318739.357834-CDS-E-siliculosus-1a_F_contig141:39000..391201696318739.357834-CDS-E-siliculosus-1a_F_contig141:39000..39120Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig141 39001..39120 +
1622927924.7701674-CDS-E-siliculosus-1a_F_contig141:39607..398351622927924.7701674-CDS-E-siliculosus-1a_F_contig141:39607..39835Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig141 39608..39835 +
1696318739.3690865-CDS-E-siliculosus-1a_F_contig141:39607..398351696318739.3690865-CDS-E-siliculosus-1a_F_contig141:39607..39835Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig141 39608..39835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig141.2426.1prot_E-siliculosus-1a_F_contig141.2426.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig141 39001..39835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig141.2426.1

>prot_E-siliculosus-1a_F_contig141.2426.1 ID=prot_E-siliculosus-1a_F_contig141.2426.1|Name=mRNA_E-siliculosus-1a_F_contig141.2426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=116bp
GRHTLTTCSDSDTHTPGLEHEANVAMRGVGKKTRAQATMPVLLRTTSLVS
AAVPWISPTGPTSVPPAPLSPNSGPPARLRGRRVLRRCSRARFGPAPVGY
TQTSDPRQRVCGRPWA
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mRNA from alignment at E-siliculosus-1a_F_contig141:39001..39837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig141.2426.1 ID=mRNA_E-siliculosus-1a_F_contig141.2426.1|Name=mRNA_E-siliculosus-1a_F_contig141.2426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=837bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig141:39001..39837+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGAGGCATACACTGACAACCTGCAGCGACTCTGATACACACACACCCGG
CCTGGAGCACGAAGCAAACGTGGCGATGCGAGGGGTGGGAAAGAAAACTC
GTGCACAAGCTACAATGCCGGTGAGATGGTAATTCACAAGGTTCGGGCAG
GAATAAAGCGGAGATCCGTTTGGGACAAACAATGTTGGTACCGTATACCG
CACACCCTCCTCGTCTCTTCGAGGGGAAAAGGAAAGAGTGTATTGTGCTA
CCCGTCGTAAGACGTGGATCCGCATGGACTGAAACGAACAATGTTCACCG
TGCTTCCCTCCTACGTGCTAAGAAAAAATATAAATGCCGTATCATTGTAC
CCCTTTGTAAAAACCTTTTGCTGTGGCACAGAGAGGGGCCCCTAACAGGC
CTCCGATGATGAGGGCTCTGCCTCTGTCCAACCAGTGTATTTGCCTGCCC
CTGCACTATAGCAACACCAGCAGCAGACATGCTTTGACTATGCATTGGCG
ATAAATGCCATGCAAAGAAGTCGACTGCATTGGCATATATCCCACATTCG
CAGCGAGTCAAAGAGCGCCACAGCAACCGCCGTCCCGCCCGCCCCCCAAT
GAAACAGGTGCTCCTTCGAACCACGTCGCTGGTGTCGGCCGCGGTGCCGT
GGATTTCACCAACCGGTCCGACATCGGTCCCGCCGGCACCCCTCTCGCCG
AACTCGGGGCCGCCGGCCCGCCTGCGCGGCCGGCGCGTCTTGCGGCGTTG
CTCTAGAGCCAGATTCGGGCCCGCGCCCGTGGGGTACACCCAGACTTCGG
ACCCGCGCCAGCGGGTATGTGGCCGGCCGTGGGCGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig141:39001..39837+

>mRNA_E-siliculosus-1a_F_contig141.2426.1 ID=mRNA_E-siliculosus-1a_F_contig141.2426.1|Name=mRNA_E-siliculosus-1a_F_contig141.2426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig141:39001..39837+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGAGGCATACACTGACAACCTGCAGCGACTCTGATACACACACACCCGG
CCTGGAGCACGAAGCAAACGTGGCGATGCGAGGGGTGGGAAAGAAAACTC
GTGCACAAGCTACAATGCCGGGGAGGCATACACTGACAACCTGCAGCGAC
TCTGATACACACACACCCGGCCTGGAGCACGAAGCAAACGTGGCGATGCG
AGGGGTGGGAAAGAAAACTCGTGCACAAGCTACAATGCCGGTGCTCCTTC
GAACCACGTCGCTGGTGTCGGCCGCGGTGCCGTGGATTTCACCAACCGGT
CCGACATCGGTCCCGCCGGCACCCCTCTCGCCGAACTCGGGGCCGCCGGC
CCGCCTGCGCGGCCGGCGCGTCTTGCGGCGTTGCTCTAGAGCCAGATTCG
GGCCCGCGCCCGTGGGGTACACCCAGACTTCGGACCCGCGCCAGCGGGTA
TGTGGCCGGCCGTGGGCGGTGCTCCTTCGAACCACGTCGCTGGTGTCGGC
CGCGGTGCCGTGGATTTCACCAACCGGTCCGACATCGGTCCCGCCGGCAC
CCCTCTCGCCGAACTCGGGGCCGCCGGCCCGCCTGCGCGGCCGGCGCGTC
TTGCGGCGTTGCTCTAGAGCCAGATTCGGGCCCGCGCCCGTGGGGTACAC
CCAGACTTCGGACCCGCGCCAGCGGGTATGTGGCCGGCCGTGGGCG
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