mRNA_E-siliculosus-1a_F_contig14092.2420.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14092.2420.1
Unique NamemRNA_E-siliculosus-1a_F_contig14092.2420.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14092.2420.1 vs. uniprot
Match: D7FUZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ9_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 6.060e-57
Identity = 118/149 (79.19%), Postives = 121/149 (81.21%), Query Frame = 1 
Query:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPPSAGAAAAXXXXXXXXXXGA---GASLGVPPVAGLQHVDLTGGAGARGSXXXXXXXXXADPAA-NARDDAELIKLLDSPQPAMNAE 435
            MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEP SA   A+XXXXXXXXXX     GAS  VP +AGLQHVDLTGG GARGS         AD AA  ARDDAELIKLLDSP  A NA+
Sbjct:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVPLMAGLQHVDLTGGMGARGSTVSGASGSGADTAAAKARDDAELIKLLDSPPTATNAK 149
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BLAST of mRNA_E-siliculosus-1a_F_contig14092.2420.1 vs. uniprot
Match: D7FZQ8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ8_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 2.920e-55
Identity = 121/150 (80.67%), Postives = 124/150 (82.67%), Query Frame = 1 
Query:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPPSAGAAAAXXXXXXXXXXGA---GASLGVPPVAGLQHVDLTGGAGARGSXXXXXXXXXADPAA-NARDDAELIKLLDSPQPAMNAEV 438
            MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHH VLLVSGEHVLLHGAKEVQPEP SA   A+XXXXXXXXXX     GAS  VPP+AGLQHVDLTGG GARGS   XX    AD AA  ARDDAELIKLLDSP  A NAE+
Sbjct:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHDVLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVPPMAGLQHVDLTGGMGARGSTVSXXSGSGADTAAAKARDDAELIKLLDSPPTATNAEI 150
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BLAST of mRNA_E-siliculosus-1a_F_contig14092.2420.1 vs. uniprot
Match: A0A6H5KEJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ6_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 3.850e-45
Identity = 94/107 (87.85%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPPSAGAAAAXXXXXXXXXX---GAGASLGVPPVAGLQHVDLTGGA 312
            MDVLRDAEKT KSTGVGSPTFR+LSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPPSA   A+XXXXXXXXX    GAGAS  VPP+AGLQHVDLTGGA
Sbjct:    1 MDVLRDAEKTGKSTGVGSPTFRQLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPPSAAGGASXXXXXXXXXSVGSGAGASASVPPMAGLQHVDLTGGA 107
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14092.2420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUZ9_ECTSI6.060e-5779.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZQ8_ECTSI2.920e-5580.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KEJ6_9PHAE3.850e-4587.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14092contigE-siliculosus-1a_F_contig14092:334..780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size447
Model size447
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927923.9571145-CDS-E-siliculosus-1a_F_contig14092:333..7801622927923.9571145-CDS-E-siliculosus-1a_F_contig14092:333..780Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14092 334..780 +
1696318738.8663068-CDS-E-siliculosus-1a_F_contig14092:333..7801696318738.8663068-CDS-E-siliculosus-1a_F_contig14092:333..780Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14092 334..780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14092.2420.1prot_E-siliculosus-1a_F_contig14092.2420.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14092 334..780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14092.2420.1

>prot_E-siliculosus-1a_F_contig14092.2420.1 ID=prot_E-siliculosus-1a_F_contig14092.2420.1|Name=mRNA_E-siliculosus-1a_F_contig14092.2420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp
MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEH
VLLHGAKEVQPEPPSAGAAAAGGAAAGGSSAGAGASLGVPPVAGLQHVDL
TGGAGARGSTGSGASGSGADPAANARDDAELIKLLDSPQPAMNAEVRL*
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mRNA from alignment at E-siliculosus-1a_F_contig14092:334..780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14092.2420.1 ID=mRNA_E-siliculosus-1a_F_contig14092.2420.1|Name=mRNA_E-siliculosus-1a_F_contig14092.2420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=447bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14092:334..780+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGTCCTGCGGGACGCCGAGAAGACCGAAAAGTCGACTGGCGTGGG
GTCTCCTACCTTCCGCCGGTTGAGCGCGGTGAAGCAGGTGGTGGAGCATG
TCGTCGACCTAGTCCACCATCACGGCGTGCTCCTTGTGTCAGGAGAGCAT
GTGCTGCTACACGGGGCTAAGGAAGTGCAGCCGGAGCCCCCTTCCGCGGG
GGCGGCCGCGGCCGGAGGAGCAGCCGCGGGAGGATCGAGCGCGGGAGCTG
GGGCGTCCCTTGGCGTGCCTCCGGTAGCGGGTCTGCAGCATGTAGACCTC
ACAGGGGGAGCGGGAGCCCGAGGCTCGACCGGGAGCGGAGCGAGTGGGAG
TGGAGCGGACCCAGCCGCTAACGCCCGTGACGATGCGGAGCTCATCAAGC
TTTTGGACTCCCCGCAGCCCGCCATGAACGCGGAGGTGCGTCTTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14092:334..780+

>mRNA_E-siliculosus-1a_F_contig14092.2420.1 ID=mRNA_E-siliculosus-1a_F_contig14092.2420.1|Name=mRNA_E-siliculosus-1a_F_contig14092.2420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14092:334..780+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGTCCTGCGGGACGCCGAGAAGACCGAAAAGTCGACTGGCGTGGG
GTCTCCTACCTTCCGCCGGTTGAGCGCGGTGAAGCAGGTGGTGGAGCATG
TCGTCGACCTAGTCCACCATCACGGCGTGCTCCTTGTGTCAGGAGAGCAT
GTGCTGCTACACGGGGCTAAGGAAGTGCAGCCGGAGCCCCCTTCCGCGGG
GGCGGCCGCGGCCGGAGGAGCAGCCGCGGGAGGATCGAGCGCGGGAGCTG
GGGCGTCCCTTGGCGTGCCTCCGGTAGCGGGTCTGCAGCATGTAGACCTC
ACAGGGGGAGCGGGAGCCCGAGGCTCGACCGGGAGCGGAGCGAGTGGGAG
TGGAGCGGACCCAGCCGCTAACGCCCGTGACGATGCGGAGCTCATCAAGC
TTTTGGACTCCCCGCAGCCCGCCATGAACGCGGAGGTGCGTCTTTGAATG
GACGTCCTGCGGGACGCCGAGAAGACCGAAAAGTCGACTGGCGTGGGGTC
TCCTACCTTCCGCCGGTTGAGCGCGGTGAAGCAGGTGGTGGAGCATGTCG
TCGACCTAGTCCACCATCACGGCGTGCTCCTTGTGTCAGGAGAGCATGTG
CTGCTACACGGGGCTAAGGAAGTGCAGCCGGAGCCCCCTTCCGCGGGGGC
GGCCGCGGCCGGAGGAGCAGCCGCGGGAGGATCGAGCGCGGGAGCTGGGG
CGTCCCTTGGCGTGCCTCCGGTAGCGGGTCTGCAGCATGTAGACCTCACA
GGGGGAGCGGGAGCCCGAGGCTCGACCGGGAGCGGAGCGAGTGGGAGTGG
AGCGGACCCAGCCGCTAACGCCCGTGACGATGCGGAGCTCATCAAGCTTT
TGGACTCCCCGCAGCCCGCCATGAACGCGGAGGTGCGTCTTTGA
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