mRNA_E-siliculosus-1a_F_contig14075.2414.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14075.2414.1
Unique NamemRNA_E-siliculosus-1a_F_contig14075.2414.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14075.2414.1 vs. uniprot
Match: D8LNQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ4_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.080e-47
Identity = 85/113 (75.22%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:   31 MADSQGTAGSATTAVHQVVTGPDITTLLCTQPKHNYWRMQEEVEMDLGLEKNAISVFFMGLGGRGSGTTKRRQVQDRLEKAGVFRWLGSNSPRRVWWLAFRGKDATRPRFEDR 369
            MAD QGTAGS  TA   V TGPDI TLLCTQP H  WR QEEVE  LGLEKNAISVF+ GLGGRGSG TK +++QD+LEKAGVFR  G   P RVWWLAFRGKDATRPRFEDR
Sbjct:    1 MADPQGTAGSDATAFPAVATGPDIVTLLCTQPVHCCWRHQEEVETALGLEKNAISVFYQGLGGRGSGATKGKRIQDQLEKAGVFRSQGDTKPHRVWWLAFRGKDATRPRFEDR 113
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BLAST of mRNA_E-siliculosus-1a_F_contig14075.2414.1 vs. uniprot
Match: D7FPI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI0_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 3.190e-47
Identity = 82/113 (72.57%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:   31 MADSQGTAGSATTAVHQVVTGPDITTLLCTQPKHNYWRMQEEVEMDLGLEKNAISVFFMGLGGRGSGTTKRRQVQDRLEKAGVFRWLGSNSPRRVWWLAFRGKDATRPRFEDR 369
            MAD QGTAGS  TA   V  GPDI TLLCTQP H  WR QEEVE  LGLEK AISVF+ GLGGRGSG TK +++QD+LEKAGVFR  G   P RVWWLAFRGKDATRPR EDR
Sbjct:    1 MADPQGTAGSDATAFPAVAIGPDIVTLLCTQPVHCCWRHQEEVETALGLEKYAISVFYQGLGGRGSGATKGKRIQDQLEKAGVFRSQGDTKPHRVWWLAFRGKDATRPRLEDR 113
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BLAST of mRNA_E-siliculosus-1a_F_contig14075.2414.1 vs. uniprot
Match: A0A6H5KB44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB44_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.400e-21
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:  205 MGLGGRGSGTTKRRQVQDRLEKAGVFRWLGSNSPRRVWWLAFRGKDATRPRFEDR 369
            MGLGGRGS  T  R+V DRLE+AGVFRWLG+NS R VWWLAF GKDATRPRFEDR
Sbjct:    1 MGLGGRGSRATNGRRVLDRLEEAGVFRWLGTNSLRSVWWLAFTGKDATRPRFEDR 55
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig14075.2414.1 vs. uniprot
Match: A0A6H5K0V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.140e-20
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:  205 MGLGGRGSGTTKRRQVQ-DRLEKAGVFRWLGSNSPRRVWWLAFRGKDATRPRFEDR 369
            MGL GRGSG TK R+V  +RLE+AGVFRWLG+NSPRRVWWLA+RGKDATRPRFEDR
Sbjct:    1 MGLRGRGSGATKGRRVLINRLEEAGVFRWLGTNSPRRVWWLAYRGKDATRPRFEDR 56
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14075.2414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LNQ4_ECTSI1.080e-4775.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPI0_ECTSI3.190e-4772.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB44_9PHAE3.400e-2180.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0V0_9PHAE1.140e-2082.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14075contigE-siliculosus-1a_F_contig14075:2..1087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size339
Model size370
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14075.2414.1prot_E-siliculosus-1a_F_contig14075.2414.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14075 32..1087 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927922.5189588-UTR-E-siliculosus-1a_F_contig14075:1..311622927922.5189588-UTR-E-siliculosus-1a_F_contig14075:1..31Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14075 2..31 +
1696318738.3820515-UTR-E-siliculosus-1a_F_contig14075:1..311696318738.3820515-UTR-E-siliculosus-1a_F_contig14075:1..31Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14075 2..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927922.52933-CDS-E-siliculosus-1a_F_contig14075:31..471622927922.52933-CDS-E-siliculosus-1a_F_contig14075:31..47Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14075 32..47 +
1696318738.3909116-CDS-E-siliculosus-1a_F_contig14075:31..471696318738.3909116-CDS-E-siliculosus-1a_F_contig14075:31..47Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14075 32..47 +
1622927922.5406427-CDS-E-siliculosus-1a_F_contig14075:764..10871622927922.5406427-CDS-E-siliculosus-1a_F_contig14075:764..1087Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14075 765..1087 +
1696318738.3992248-CDS-E-siliculosus-1a_F_contig14075:764..10871696318738.3992248-CDS-E-siliculosus-1a_F_contig14075:764..1087Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14075 765..1087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14075.2414.1

>prot_E-siliculosus-1a_F_contig14075.2414.1 ID=prot_E-siliculosus-1a_F_contig14075.2414.1|Name=mRNA_E-siliculosus-1a_F_contig14075.2414.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=113bp
MADSQGTAGSATTAVHQVVTGPDITTLLCTQPKHNYWRMQEEVEMDLGLE
KNAISVFFMGLGGRGSGTTKRRQVQDRLEKAGVFRWLGSNSPRRVWWLAF
RGKDATRPRFEDR
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mRNA from alignment at E-siliculosus-1a_F_contig14075:2..1087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14075.2414.1 ID=mRNA_E-siliculosus-1a_F_contig14075.2414.1|Name=mRNA_E-siliculosus-1a_F_contig14075.2414.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1086bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14075:2..1087+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCCGTGGCGCCGTCTGCTCCAGCGTCATCATGGCGGACTCACAAGGTAA
GGAGTCGACCATGGTACCCAGATAGACCCTTCCTGAAGTTTTGGTGCCAT
GTGGGTGGCTGTGAGTAGAGTTCGCACCACACGATTTTGGCATGCCGACC
ACGCTGGCTGCACCCGTTTTAGGCCTTACCATAGAGGCCACATTTCGGGC
TTGCCACTTAGCAGACAGCAGTTACACCAGGTTAGTGTTTGATGCCCACG
GCGAGCCTATGCTGGGTCTAGGAATCGCCCGCTATGATGTTGGTAATGAC
GTTCAACATCGAGTAGAGACCAAAATGTCGATTTTTGGACTAAAAACCGG
CCCGCGGGATGGCAAGGGCCAGGTACGCATGAAGTTCCACGAACGGCGAG
TGCAGGCTGCCGATCATTGCGAGTTTTTGGCGCAGCATATAACTGCTGTA
TGCCGTGCAAAGTACGAAAGAATGGGCGAATTTGGTTCAAAACAGCAGTA
GGCCGCTCTGTTTTTGTGAGCATCAGCGTCATTTTTGGAAACAGCCGCAG
ACCCCCCCCCCCCGAAAGTACCCTTTATTCAGGCAGGGAGGGCTTTGTAG
GGGTCAAACCTTGTCAAAAGTGCCCCGAGAGTGAAAGATAGCTGAGGTGA
AGGCCTTTCATATGAACTATTAAGCTGGCGTAATAGCAGTGTTCAGCGGG
CGGTTAATTTCAATACCGCAAAATTAGGAATGACCCAAAATGCGTGTTTT
CCTTCGCGCGCAGGCACAGCAGGAAGCGCAACAACCGCTGTCCATCAGGT
CGTCACTGGTCCAGACATCACGACCCTGTTGTGCACCCAGCCAAAGCACA
ATTACTGGCGTATGCAGGAAGAAGTAGAGATGGATCTGGGGCTAGAGAAA
AATGCTATTAGCGTTTTTTTTATGGGCCTAGGGGGGAGGGGTAGTGGGAC
GACCAAGCGGCGACAGGTTCAAGACCGACTGGAGAAGGCTGGGGTTTTCC
GCTGGCTGGGGTCCAATTCACCGCGCAGGGTTTGGTGGTTGGCTTTTAGG
GGGAAGGACGCGACACGACCCAGGTTTGAGGACAGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14075:2..1087+

>mRNA_E-siliculosus-1a_F_contig14075.2414.1 ID=mRNA_E-siliculosus-1a_F_contig14075.2414.1|Name=mRNA_E-siliculosus-1a_F_contig14075.2414.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14075:2..1087+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGACTCACAAGATGGCGGACTCACAAGGCACAGCAGGAAGCGCAA
CAACCGCTGTCCATCAGGTCGTCACTGGTCCAGACATCACGACCCTGTTG
TGCACCCAGCCAAAGCACAATTACTGGCGTATGCAGGAAGAAGTAGAGAT
GGATCTGGGGCTAGAGAAAAATGCTATTAGCGTTTTTTTTATGGGCCTAG
GGGGGAGGGGTAGTGGGACGACCAAGCGGCGACAGGTTCAAGACCGACTG
GAGAAGGCTGGGGTTTTCCGCTGGCTGGGGTCCAATTCACCGCGCAGGGT
TTGGTGGTTGGCTTTTAGGGGGAAGGACGCGACACGACCCAGGTTTGAGG
ACAGAGCACAGCAGGAAGCGCAACAACCGCTGTCCATCAGGTCGTCACTG
GTCCAGACATCACGACCCTGTTGTGCACCCAGCCAAAGCACAATTACTGG
CGTATGCAGGAAGAAGTAGAGATGGATCTGGGGCTAGAGAAAAATGCTAT
TAGCGTTTTTTTTATGGGCCTAGGGGGGAGGGGTAGTGGGACGACCAAGC
GGCGACAGGTTCAAGACCGACTGGAGAAGGCTGGGGTTTTCCGCTGGCTG
GGGTCCAATTCACCGCGCAGGGTTTGGTGGTTGGCTTTTAGGGGGAAGGA
CGCGACACGACCCAGGTTTGAGGACAGA
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