mRNA_E-siliculosus-1a_F_contig1407.2411.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: D8LFT7_ECTSI (Plastid phosphoglycerate mutase protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT7_ECTSI) HSP 1 Score: 638 bits (1646), Expect = 3.280e-230 Identity = 319/321 (99.38%), Postives = 319/321 (99.38%), Query Frame = 1
Query: 166 MRRPGRPRPAPGGFLIALATARKSFTRAFCFGGGSSSSVGKRLFRSTAAESSAKAGTGPRGLATATPPESPFPPPGDDDELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL 1128
MRRPGRPRPAPGGFLIALATARKSFTRAFCFGGGSSSSVGKRLFRSTAAESSAKAGTGPRGLATATPPESPFPP GDD ELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL
Sbjct: 1 MRRPGRPRPAPGGFLIALATARKSFTRAFCFGGGSSSSVGKRLFRSTAAESSAKAGTGPRGLATATPPESPFPPAGDDGELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL 321
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: Q00GN2_KARBR (Plastid phosphoglycerate mutase protein (Fragment) n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GN2_KARBR) HSP 1 Score: 180 bits (457), Expect = 4.420e-50 Identity = 111/267 (41.57%), Postives = 152/267 (56.93%), Query Frame = 1
Query: 343 RGLATATPPESPFPPPGDDDELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPR-----TLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVP--EASGFVEAADAARLLKDGEDDNRY 1122
R LAT P P + + + +LRHG+TNFNA G +QG+ D S LTE+G +QA +AG LA+ +DL + V VSP+ RA TLE V Q L S +P++REI+L+ W+G+ KED+ + P+ Y +W + +F G YP +LW+RA AW IR+ + D R TL+V HN I QAL ++A+G D +YFR+LS+PN LE W GE A R+RW +P EAS +A AA L D RY
Sbjct: 78 RRLAT---PACMCPSAAEQAPSKRYLILRHGETNFNAKGILQGSSDISRLTEKGQAQANKAGMELATLSDLPI-EQVFVSPLTRATSTLELVAQSLPCS-----LPEAITLPELREIDLYSWEGKQKEDLKREMPDTYQAWKSADPDFVVDGHYPLVELWQRAKEAWAAIRASE---DGKRDIDGVTLIVCHNGIGQALFFSAIGLDASYFRQLSFPNAGALECDWPLGELHASRWRWRLPLDEASSEWRSATAASL---DASDGRY 329
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A7S0F1H7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F1H7_9CRYP) HSP 1 Score: 175 bits (443), Expect = 1.980e-47 Identity = 97/217 (44.70%), Postives = 138/217 (63.59%), Query Frame = 1
Query: 415 FFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVAD-PSNFNF-SGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEAS 1059
F +LRHG+TN+NA GRIQG+ D S LTEEG +QA G L S +D +V VSP+ RA++TLE L ++ ++ D+RE++L+EW+G LK++I + P+ Y+ W + P F SG+YP RDLWKRASN WD +R + + TL+VAHN INQALL T LG +FRKL +PNC + E+ G+++A+++RW+ P S
Sbjct: 158 FLILRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGGIL-SEIHID---SVFVSPLTRARRTLELAEAGLGRNLSGSAI----VLDDLREVDLYEWEGMLKKEIKEMYPDIYSLWRGENPRQFKLDSGKYPIRDLWKRASNVWDVLR--RDATNGKTTLIVAHNGINQALLCTTLGLSEEFFRKLEFPNCGIAEVIIPHGQSKAKQWRWLYPTPS 364
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A7S4C0X0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0X0_CHRCT) HSP 1 Score: 160 bits (406), Expect = 3.990e-43 Identity = 99/257 (38.52%), Postives = 138/257 (53.70%), Query Frame = 1
Query: 352 ATATPPESPFPPPGDDDELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIV-PDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRT---LVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRG--------------EARAERYRWVVPEASGFV 1068
A PP S P G F +LRHG+TN NA G IQG+ D S+LT++G QA AG+ LA V VSP+ RA+ TLE R+ + T EIV D+RE++L++W+G+ K D+ + P++Y +W P F+ SG+ P DLW RA N W +I S + + P + LVV H+ I QALL TALG D FR+ + PNC +EL+W G + A R+RW++P S +
Sbjct: 19 AALQPPTSAAPGAGC-----KFVILRHGETNHNADGIIQGSSDVSVLTDKGKEQARRAGEQLAELYQEGSISKVFVSPLSRARDTLELCRK-------TAPLPTGEIVLADLREVDLWDWEGRNKADLRRERPDEYEAWKGQPLLFSVSGKKPIVDLWARARNVWREIHS--QVPEDPSSGTILVVCHSGIGQALLSTALGEDERSFRRRALPNCGAVELEWIDGYVASTDGGVASMDSDCLANRWRWLIPNTSEWT 261
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A7S4I552_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I552_9STRA) HSP 1 Score: 160 bits (404), Expect = 6.870e-43 Identity = 93/249 (37.35%), Postives = 138/249 (55.42%), Query Frame = 1
Query: 388 PGDDDELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYAD----LDLGPT--VVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASW-VADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSI-------QDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARL 1092
P L +F+LRHG+T+ NA GRIQG+ D S LTE G SQA G + +D +D GP V SP+ RAQ+TL+ +R+ S I + E V + ++REI+L++W+G+ +I +N+PE YA+W + D SG P ++W RA W+ IRS ++ ++ TL+V H + Q LL +ALG D T+FR+ +PNC + E+ W E A +RW P S ++ D L
Sbjct: 33 PPSSASLHRYFILRHGETDANASGRIQGSADFSRLTERGQSQAARVGSVVFGGSDGEGSID-GPIRHVYASPLTRAQETLQIIREHADPSLIPGEGEIV--LDELREIDLYDWEGRHTSEIEENDPEAYAAWTMGDAHGMEVSGCKPIVEMWARAGRVWEIIRSANAVAGRTDSDENPSSTLLVCHGTLGQGLLSSALGLDETHFRRHDFPNCGMAEIVWYHDEEIARNWRWHHPSRSELMQPFDQTVL 278
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: L1ISC6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ISC6_GUITC) HSP 1 Score: 150 bits (379), Expect = 4.840e-40 Identity = 88/198 (44.44%), Postives = 124/198 (62.63%), Query Frame = 1
Query: 415 FFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNN-PEQYASWVAD-PSNFNF-SGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLEL 999
F LRHG+TN+NA GRIQG+ D S LTEEG +QA G+ L+ D+ + +V VSP+ RA+ TLE ++ +S ++ ++ D+RE++L EW+G LK+ IK P+ Y+ W + P F SG+YP RDLWKRA W+ +R + + +L+VAHN INQALL T LG YFRKL +PNC + E+
Sbjct: 17 FLFLRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGRILS---DIPID-SVFVSPLTRARMTLELAAAGSGRN-LS---DSAMVLDDLREVDLHEWEGMLKKQEIKEMYPDIYSLWRGENPREFKLDSGKYPIRDLWKRAGKVWEVLR--RDAANGKTSLIVAHNGINQALLCTTLGLSEEYFRKLEFPNCGIAEV 204
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A812MB86_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812MB86_9DINO) HSP 1 Score: 143 bits (360), Expect = 9.310e-37 Identity = 92/231 (39.83%), Postives = 133/231 (57.58%), Query Frame = 1
Query: 409 ESFFLLRHGQTNFNAIGRIQGTLDS-SILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLK 1098
+ F L+RHGQT FNA R QG++D S+LT +GISQA E G+ L V VSP+ RA+QTLE R E+ ET + ++REI+L+EWQG+ +++I +PE W + N SGRY RDLW+R+ AW ++R + ++ R+LVVAH AI +AL+ TALG FR L+ N V+E+ W EA+ +R + P+ + AD + +K
Sbjct: 20 QRFLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVARTVA--GEVLPPTETK--LSELREIDLYEWQGRTQDEIRAEDPELMRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQVAPSGEE-RSLVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAWSGSEAK---WRKLHPDKGPWRCLADEEQAMK 238
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: R1DPI0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DPI0_EMIHU) HSP 1 Score: 141 bits (355), Expect = 8.610e-36 Identity = 92/248 (37.10%), Postives = 131/248 (52.82%), Query Frame = 1
Query: 415 FFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPAR-----DLWKRA-SNAWDQIRSLQSI---QDQPRTLVVAHNAINQALLWTALGCDTTYFRKLS------------WPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLL 1095
F +LRHGQT+ N G IQG+ D S L++ G +QA E G LA D+ + T + SP+ RAQQT E + + D T + +REI+L W+G+ K ++ P+ YA+W DP GR P +LW+RA S AW +R++ + D+ TLVV H ++ QALL TALG D T +R+ +PNC + E+ W RA R+RW +PE G ++ AAR L
Sbjct: 22 FLVLRHGQTDHNRDGIIQGSSDVSRLSDRGRTQAREVGAALARLGDVRVARTFL-SPLARAQQTHEILLLD------RPDLPTPTTLDGLREIDLGSWEGRAKAELRAEQPDVYAAWQCDPLAMVVDGRRPRCRKPIVELWERARSAAWPTLRAVDTAAAEDDEGATLVVCHGSLGQALLCTALGLDATAWRRHRLARCTAERARHPFPNCGMAEIDWPADAPRATRWRWRLPE-EGCWQSGTAARAL 261
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A2J6K5X6_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6K5X6_LACSA) HSP 1 Score: 141 bits (355), Expect = 8.660e-34 Identity = 84/190 (44.21%), Postives = 113/190 (59.47%), Query Frame = 1
Query: 421 LLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAV 990
L+RHGQ+ +NA GRIQG+ D SILT++G +QA E + + D+ SP+ R+++T E + R+ EI D D+REI+L+ +QG LK + I E +A W D NFN G YP R+LW+RASN W++I I D LVVAHNA+NQAL+ TA+G T YFR L NC V
Sbjct: 84 LVRHGQSTWNAEGRIQGSSDFSILTQKGEAQA-ETSRQMLIDDSFDI---CFSSPLRRSKRTAEVIWGS-RQEEILTD-------SDLREIDLYSFQGLLKHEGISKYGEAFAQWQKDAPNFNIDGHYPVRELWERASNCWNKIL----IHDSRSVLVVAHNAVNQALVATAMGLGTEYFRILLQSNCGV 257
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A812LVJ0_9DINO (NEK1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812LVJ0_9DINO) HSP 1 Score: 140 bits (353), Expect = 1.020e-33 Identity = 91/231 (39.39%), Postives = 132/231 (57.14%), Query Frame = 1
Query: 409 ESFFLLRHGQTNFNAIGRIQGTLDS-SILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLK 1098
+ F L+RHGQT FNA R QG++D S+LT +GISQA E G+ L V VSP+ RA+QTLE R E+ ET + ++REI+L+EWQG+ +++I +PE W + N SGRY RDLW+R+ AW ++R + + + +LVVAH AI +AL+ TALG FR L+ N V+E+ W EA+ +R + P+ + AD + +K
Sbjct: 253 QRFLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVARTVA--GEVLPPTETK--LSELREIDLYEWQGRTQDEIRAEDPEFIRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQVAPSRGET-SLVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAWSGSEAK---WRKLHPDKGPWRCLADEEQAMK 471 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1407.2411.1 >prot_E-siliculosus-1a_F_contig1407.2411.1 ID=prot_E-siliculosus-1a_F_contig1407.2411.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2411.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=322bp MRRPGRPRPAPGGFLIALATARKSFTRAFCFGGGSSSSVGKRLFRSTAAEback to top mRNA from alignment at E-siliculosus-1a_F_contig1407:23337..27074+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1407.2411.1 ID=mRNA_E-siliculosus-1a_F_contig1407.2411.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2411.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3738bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1407:23337..27074+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1407:23337..27074+ >mRNA_E-siliculosus-1a_F_contig1407.2411.1 ID=mRNA_E-siliculosus-1a_F_contig1407.2411.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2411.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1932bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1407:23337..27074+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |