mRNA_E-siliculosus-1a_F_contig1407.2411.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1407.2411.1
Unique NamemRNA_E-siliculosus-1a_F_contig1407.2411.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: D8LFT7_ECTSI (Plastid phosphoglycerate mutase protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT7_ECTSI)

HSP 1 Score: 638 bits (1646), Expect = 3.280e-230
Identity = 319/321 (99.38%), Postives = 319/321 (99.38%), Query Frame = 1
Query:  166 MRRPGRPRPAPGGFLIALATARKSFTRAFCFGGGSSSSVGKRLFRSTAAESSAKAGTGPRGLATATPPESPFPPPGDDDELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL 1128
            MRRPGRPRPAPGGFLIALATARKSFTRAFCFGGGSSSSVGKRLFRSTAAESSAKAGTGPRGLATATPPESPFPP GDD ELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL
Sbjct:    1 MRRPGRPRPAPGGFLIALATARKSFTRAFCFGGGSSSSVGKRLFRSTAAESSAKAGTGPRGLATATPPESPFPPAGDDGELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL 321          
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: Q00GN2_KARBR (Plastid phosphoglycerate mutase protein (Fragment) n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GN2_KARBR)

HSP 1 Score: 180 bits (457), Expect = 4.420e-50
Identity = 111/267 (41.57%), Postives = 152/267 (56.93%), Query Frame = 1
Query:  343 RGLATATPPESPFPPPGDDDELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPR-----TLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVP--EASGFVEAADAARLLKDGEDDNRY 1122
            R LAT   P    P   +    + + +LRHG+TNFNA G +QG+ D S LTE+G +QA +AG  LA+ +DL +   V VSP+ RA  TLE V Q L  S           +P++REI+L+ W+G+ KED+ +  P+ Y +W +   +F   G YP  +LW+RA  AW  IR+ +   D  R     TL+V HN I QAL ++A+G D +YFR+LS+PN   LE  W  GE  A R+RW +P  EAS    +A AA L      D RY
Sbjct:   78 RRLAT---PACMCPSAAEQAPSKRYLILRHGETNFNAKGILQGSSDISRLTEKGQAQANKAGMELATLSDLPI-EQVFVSPLTRATSTLELVAQSLPCS-----LPEAITLPELREIDLYSWEGKQKEDLKREMPDTYQAWKSADPDFVVDGHYPLVELWQRAKEAWAAIRASE---DGKRDIDGVTLIVCHNGIGQALFFSAIGLDASYFRQLSFPNAGALECDWPLGELHASRWRWRLPLDEASSEWRSATAASL---DASDGRY 329          
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A7S0F1H7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F1H7_9CRYP)

HSP 1 Score: 175 bits (443), Expect = 1.980e-47
Identity = 97/217 (44.70%), Postives = 138/217 (63.59%), Query Frame = 1
Query:  415 FFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVAD-PSNFNF-SGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEAS 1059
            F +LRHG+TN+NA GRIQG+ D S LTEEG +QA   G  L S   +D   +V VSP+ RA++TLE     L ++          ++ D+RE++L+EW+G LK++I +  P+ Y+ W  + P  F   SG+YP RDLWKRASN WD +R  +   +   TL+VAHN INQALL T LG    +FRKL +PNC + E+    G+++A+++RW+ P  S
Sbjct:  158 FLILRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGGIL-SEIHID---SVFVSPLTRARRTLELAEAGLGRNLSGSAI----VLDDLREVDLYEWEGMLKKEIKEMYPDIYSLWRGENPRQFKLDSGKYPIRDLWKRASNVWDVLR--RDATNGKTTLIVAHNGINQALLCTTLGLSEEFFRKLEFPNCGIAEVIIPHGQSKAKQWRWLYPTPS 364          
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A7S4C0X0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0X0_CHRCT)

HSP 1 Score: 160 bits (406), Expect = 3.990e-43
Identity = 99/257 (38.52%), Postives = 138/257 (53.70%), Query Frame = 1
Query:  352 ATATPPESPFPPPGDDDELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIV-PDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRT---LVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRG--------------EARAERYRWVVPEASGFV 1068
            A   PP S  P  G       F +LRHG+TN NA G IQG+ D S+LT++G  QA  AG+ LA          V VSP+ RA+ TLE  R+       +    T EIV  D+RE++L++W+G+ K D+ +  P++Y +W   P  F+ SG+ P  DLW RA N W +I S   + + P +   LVV H+ I QALL TALG D   FR+ + PNC  +EL+W  G              +  A R+RW++P  S + 
Sbjct:   19 AALQPPTSAAPGAGC-----KFVILRHGETNHNADGIIQGSSDVSVLTDKGKEQARRAGEQLAELYQEGSISKVFVSPLSRARDTLELCRK-------TAPLPTGEIVLADLREVDLWDWEGRNKADLRRERPDEYEAWKGQPLLFSVSGKKPIVDLWARARNVWREIHS--QVPEDPSSGTILVVCHSGIGQALLSTALGEDERSFRRRALPNCGAVELEWIDGYVASTDGGVASMDSDCLANRWRWLIPNTSEWT 261          
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A7S4I552_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I552_9STRA)

HSP 1 Score: 160 bits (404), Expect = 6.870e-43
Identity = 93/249 (37.35%), Postives = 138/249 (55.42%), Query Frame = 1
Query:  388 PGDDDELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYAD----LDLGPT--VVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASW-VADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSI-------QDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARL 1092
            P     L  +F+LRHG+T+ NA GRIQG+ D S LTE G SQA   G  +   +D    +D GP   V  SP+ RAQ+TL+ +R+    S I  + E V  + ++REI+L++W+G+   +I +N+PE YA+W + D      SG  P  ++W RA   W+ IRS  ++       ++   TL+V H  + Q LL +ALG D T+FR+  +PNC + E+ W   E  A  +RW  P  S  ++  D   L
Sbjct:   33 PPSSASLHRYFILRHGETDANASGRIQGSADFSRLTERGQSQAARVGSVVFGGSDGEGSID-GPIRHVYASPLTRAQETLQIIREHADPSLIPGEGEIV--LDELREIDLYDWEGRHTSEIEENDPEAYAAWTMGDAHGMEVSGCKPIVEMWARAGRVWEIIRSANAVAGRTDSDENPSSTLLVCHGTLGQGLLSSALGLDETHFRRHDFPNCGMAEIVWYHDEEIARNWRWHHPSRSELMQPFDQTVL 278          
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: L1ISC6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ISC6_GUITC)

HSP 1 Score: 150 bits (379), Expect = 4.840e-40
Identity = 88/198 (44.44%), Postives = 124/198 (62.63%), Query Frame = 1
Query:  415 FFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNN-PEQYASWVAD-PSNFNF-SGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLEL 999
            F  LRHG+TN+NA GRIQG+ D S LTEEG +QA   G+ L+   D+ +  +V VSP+ RA+ TLE       ++ +S   ++  ++ D+RE++L EW+G LK+  IK   P+ Y+ W  + P  F   SG+YP RDLWKRA   W+ +R  +   +   +L+VAHN INQALL T LG    YFRKL +PNC + E+
Sbjct:   17 FLFLRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGRILS---DIPID-SVFVSPLTRARMTLELAAAGSGRN-LS---DSAMVLDDLREVDLHEWEGMLKKQEIKEMYPDIYSLWRGENPREFKLDSGKYPIRDLWKRAGKVWEVLR--RDAANGKTSLIVAHNGINQALLCTTLGLSEEYFRKLEFPNCGIAEV 204          
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A812MB86_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812MB86_9DINO)

HSP 1 Score: 143 bits (360), Expect = 9.310e-37
Identity = 92/231 (39.83%), Postives = 133/231 (57.58%), Query Frame = 1
Query:  409 ESFFLLRHGQTNFNAIGRIQGTLDS-SILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLK 1098
            + F L+RHGQT FNA  R QG++D  S+LT +GISQA E G+ L           V VSP+ RA+QTLE  R      E+    ET   + ++REI+L+EWQG+ +++I   +PE    W  +  N   SGRY  RDLW+R+  AW ++R +    ++ R+LVVAH AI +AL+ TALG     FR L+  N  V+E+ W   EA+   +R + P+   +   AD  + +K
Sbjct:   20 QRFLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVARTVA--GEVLPPTETK--LSELREIDLYEWQGRTQDEIRAEDPELMRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQVAPSGEE-RSLVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAWSGSEAK---WRKLHPDKGPWRCLADEEQAMK 238          
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: R1DPI0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DPI0_EMIHU)

HSP 1 Score: 141 bits (355), Expect = 8.610e-36
Identity = 92/248 (37.10%), Postives = 131/248 (52.82%), Query Frame = 1
Query:  415 FFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPAR-----DLWKRA-SNAWDQIRSLQSI---QDQPRTLVVAHNAINQALLWTALGCDTTYFRKLS------------WPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLL 1095
            F +LRHGQT+ N  G IQG+ D S L++ G +QA E G  LA   D+ +  T + SP+ RAQQT E +  +        D  T   +  +REI+L  W+G+ K ++    P+ YA+W  DP      GR P       +LW+RA S AW  +R++ +     D+  TLVV H ++ QALL TALG D T +R+              +PNC + E+ W     RA R+RW +PE  G  ++  AAR L
Sbjct:   22 FLVLRHGQTDHNRDGIIQGSSDVSRLSDRGRTQAREVGAALARLGDVRVARTFL-SPLARAQQTHEILLLD------RPDLPTPTTLDGLREIDLGSWEGRAKAELRAEQPDVYAAWQCDPLAMVVDGRRPRCRKPIVELWERARSAAWPTLRAVDTAAAEDDEGATLVVCHGSLGQALLCTALGLDATAWRRHRLARCTAERARHPFPNCGMAEIDWPADAPRATRWRWRLPE-EGCWQSGTAARAL 261          
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A2J6K5X6_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6K5X6_LACSA)

HSP 1 Score: 141 bits (355), Expect = 8.660e-34
Identity = 84/190 (44.21%), Postives = 113/190 (59.47%), Query Frame = 1
Query:  421 LLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAV 990
            L+RHGQ+ +NA GRIQG+ D SILT++G +QA E  + +      D+      SP+ R+++T E +    R+ EI  D        D+REI+L+ +QG LK + I    E +A W  D  NFN  G YP R+LW+RASN W++I     I D    LVVAHNA+NQAL+ TA+G  T YFR L   NC V
Sbjct:   84 LVRHGQSTWNAEGRIQGSSDFSILTQKGEAQA-ETSRQMLIDDSFDI---CFSSPLRRSKRTAEVIWGS-RQEEILTD-------SDLREIDLYSFQGLLKHEGISKYGEAFAQWQKDAPNFNIDGHYPVRELWERASNCWNKIL----IHDSRSVLVVAHNAVNQALVATAMGLGTEYFRILLQSNCGV 257          
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Match: A0A812LVJ0_9DINO (NEK1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812LVJ0_9DINO)

HSP 1 Score: 140 bits (353), Expect = 1.020e-33
Identity = 91/231 (39.39%), Postives = 132/231 (57.14%), Query Frame = 1
Query:  409 ESFFLLRHGQTNFNAIGRIQGTLDS-SILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLK 1098
            + F L+RHGQT FNA  R QG++D  S+LT +GISQA E G+ L           V VSP+ RA+QTLE  R      E+    ET   + ++REI+L+EWQG+ +++I   +PE    W  +  N   SGRY  RDLW+R+  AW ++R +   + +  +LVVAH AI +AL+ TALG     FR L+  N  V+E+ W   EA+   +R + P+   +   AD  + +K
Sbjct:  253 QRFLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVARTVA--GEVLPPTETK--LSELREIDLYEWQGRTQDEIRAEDPEFIRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQVAPSRGET-SLVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAWSGSEAK---WRKLHPDKGPWRCLADEEQAMK 471          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT7_ECTSI3.280e-23099.38Plastid phosphoglycerate mutase protein n=2 Tax=Ec... [more]
Q00GN2_KARBR4.420e-5041.57Plastid phosphoglycerate mutase protein (Fragment)... [more]
A0A7S0F1H7_9CRYP1.980e-4744.70Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4C0X0_CHRCT3.990e-4338.52Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4I552_9STRA6.870e-4337.35Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
L1ISC6_GUITC4.840e-4044.44Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A812MB86_9DINO9.310e-3739.83Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
R1DPI0_EMIHU8.610e-3637.10Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A2J6K5X6_LACSA8.660e-3444.21Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]
A0A812LVJ0_9DINO1.020e-3339.39NEK1 protein n=1 Tax=Symbiodinium necroappetens Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1407contigE-siliculosus-1a_F_contig1407:23337..27074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size966
Model size1143
Exons5
Ec32 orthologEc-01_000980.1
Ec32 ortholog descriptionplastid phosphoglycerate mutase protein precursor
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EC3.1.3.63
EggNOG OGsCOG0588@1,KOG0235@2759
EggNOG free text desc.regulation of pentose-phosphate shunt
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0047538
KEGG koko:K22200
Seed eggNOG ortholog2880.D8LFT7
Seed ortholog evalue2.3e-181
Seed ortholog score641.3
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927922.1900406-UTR-E-siliculosus-1a_F_contig1407:23336..234181622927922.1900406-UTR-E-siliculosus-1a_F_contig1407:23336..23418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1407 23337..23418 +
1696318738.2083564-UTR-E-siliculosus-1a_F_contig1407:23336..234181696318738.2083564-UTR-E-siliculosus-1a_F_contig1407:23336..23418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1407 23337..23418 +
1622927922.2146158-UTR-E-siliculosus-1a_F_contig1407:23704..237871622927922.2146158-UTR-E-siliculosus-1a_F_contig1407:23704..23787Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1407 23705..23787 +
1696318738.2212539-UTR-E-siliculosus-1a_F_contig1407:23704..237871696318738.2212539-UTR-E-siliculosus-1a_F_contig1407:23704..23787Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1407 23705..23787 +
1622927922.2902462-UTR-E-siliculosus-1a_F_contig1407:27062..270741622927922.2902462-UTR-E-siliculosus-1a_F_contig1407:27062..27074Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1407 27063..27074 +
1696318738.267977-UTR-E-siliculosus-1a_F_contig1407:27062..270741696318738.267977-UTR-E-siliculosus-1a_F_contig1407:27062..27074Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1407 27063..27074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927922.2301579-CDS-E-siliculosus-1a_F_contig1407:23787..240901622927922.2301579-CDS-E-siliculosus-1a_F_contig1407:23787..24090Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1407 23788..24090 +
1696318738.2300062-CDS-E-siliculosus-1a_F_contig1407:23787..240901696318738.2300062-CDS-E-siliculosus-1a_F_contig1407:23787..24090Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1407 23788..24090 +
1622927922.2454042-CDS-E-siliculosus-1a_F_contig1407:24582..248211622927922.2454042-CDS-E-siliculosus-1a_F_contig1407:24582..24821Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1407 24583..24821 +
1696318738.2393975-CDS-E-siliculosus-1a_F_contig1407:24582..248211696318738.2393975-CDS-E-siliculosus-1a_F_contig1407:24582..24821Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1407 24583..24821 +
1622927922.2599134-CDS-E-siliculosus-1a_F_contig1407:26191..262841622927922.2599134-CDS-E-siliculosus-1a_F_contig1407:26191..26284Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1407 26192..26284 +
1696318738.2489982-CDS-E-siliculosus-1a_F_contig1407:26191..262841696318738.2489982-CDS-E-siliculosus-1a_F_contig1407:26191..26284Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1407 26192..26284 +
1622927922.2756772-CDS-E-siliculosus-1a_F_contig1407:26731..270621622927922.2756772-CDS-E-siliculosus-1a_F_contig1407:26731..27062Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1407 26732..27062 +
1696318738.2583916-CDS-E-siliculosus-1a_F_contig1407:26731..270621696318738.2583916-CDS-E-siliculosus-1a_F_contig1407:26731..27062Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1407 26732..27062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1407.2411.1prot_E-siliculosus-1a_F_contig1407.2411.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1407 23788..27062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1407.2411.1

>prot_E-siliculosus-1a_F_contig1407.2411.1 ID=prot_E-siliculosus-1a_F_contig1407.2411.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2411.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=322bp
MRRPGRPRPAPGGFLIALATARKSFTRAFCFGGGSSSSVGKRLFRSTAAE
SSAKAGTGPRGLATATPPESPFPPPGDDDELESFFLLRHGQTNFNAIGRI
QGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLEC
VRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASW
VADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAIN
QALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGF
VEAADAARLLKDGEDDNRYTL*
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mRNA from alignment at E-siliculosus-1a_F_contig1407:23337..27074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1407.2411.1 ID=mRNA_E-siliculosus-1a_F_contig1407.2411.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2411.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3738bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1407:23337..27074+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCGCACAAGGCACGTTTGTTTCTCCATCGTGTGTGTGTCCACTTCAGTC CTTTTGAGTGGGCGTGTGGGCATCTCCCTCAGGTGTGTTGCATTCTCCGG CCTCTTTGGAGTCTTGAGTGTGGTCTGTGTGCTTCGTGTCCCCTATCGGA GCAATAGGGTTGCCGTAAGCGGGTAGCGATTACTTTCGTGTTTCGTTTCA TGTTCGCAGACACTGCAGAGAGCTGTTCAACTTGCATCTCTTTCGTTTCA CTTGCAGTGCCCCACTTTCCGAGCCCGGGAGACATGCCGTGGCTTATTCA AACTCATCCACACCATGCCTGTGGCAACTCTTGCCCGGTGCTTTCAACCC CCACATCCCTCCCCTCAGGGTTCAAACATCAAACCGAGCGGGGCGGAAAC ACAACGAACGAGCGATTTACATACGCTACGATTTGTAGGGTTCATCAGAA GATGCGGAGACCAGGTCGACCGCGACCAGCCCCTGGAGGCTTCCTGATAG CCCTGGCCACCGCCAGGAAGAGCTTCACCCGGGCCTTCTGCTTCGGTGGC GGTAGTAGCAGCAGCGTTGGGAAGCGGCTGTTTCGGAGCACTGCGGCGGA ATCATCTGCGAAAGCTGGCACCGGTCCCCGCGGTCTTGCAACCGCAACGC CGCCAGAGTCGCCCTTTCCGCCCCCCGGAGACGACGACGAGCTCGAGTCG TTCTTCTTGTTACGGCATGGGCAGACCAATTTCAACGCCATAGGGCGTAT CCAGGTGCGTGTTGTGTGCTTGGTTTTTGTGGGCGAGTGTTGTGCCCTCG GGAGCTGCTCTCTATATAGTGCGAGTGTTGTATGATGTATGATACGACTC TTTCCTGTAGCGCATCGACCATGGATACAAGGCCGTGACGACGAGCAGTT GACGACGAGCAGTCAGAGGGTCTTACGCTTGGGGAGTTGACGTCAACGCT TCGCTGTGCGACGCACGGCCCTGTGCGTGAGTGTCGTCAACCTGTGTGGG CCGTGCGTGCGGCGATGCTCTAGGGAGGGACGCGTATGTTGCGATCGAGC CAGCGCTCGCTCGCACCACAGGCTACCTACAGCTTAATAGCAACCACGCA TAGTTTTGTTTGTGGTGTCGAATTCGAGTTGTTCGCGTCCAGCCGAACTC TCGCGGATATTTCCGTCGTGCAATCTGGATTGCCCTTCCCAAAGACGAAC TCTGCTTGGTGCTATGTACCGGCGTGTGTGCTGGTCTCTGCTGCAGGGAA CGTTAGATTCGTCAATCCTGACGGAGGAGGGCATCTCGCAAGCGTTGGAG GCTGGCAAGACGCTTGCCTCATACGCCGACCTAGACCTGGGTCCCACGGT GGTAGTTTCTCCGATGGGCCGGGCTCAGCAGACGCTGGAGTGCGTGCGGC AGGAGCTTAGGAAGAGCGAGATTAGCAAGGACTTCGAGACCGTGGAAATC GTGCCAGACATTCGGGAAATCGAGCTCTTCGAGTGGTGAGTGGCTAACCG TTCGTGCTGACCCACATGTTTCGTACTTCGGAGTTGTAGTCGTCACAGAA AGACGAGCTGTTCGCGATTATTCTCAAGAGGGTGTGTATTGAAGGATAGG ATTGAGAACAACCTGCCGGGTGCGGGGATGTATTGAGTCTGTTAAGGTTA CAGTCCTTACGTATCTACCGTGAGAAACCAGCGATGCCAGCCGGAACCAT ACTTTATGTTAGGCTGTGTTGCGAGGAAGGTGTTCTACGCCCATTGGTAA GCGATCTCTTCTTGTAATGAGTTACAACAGCAGCACCTCACCCAGGGTGT TTTGTGGGGAAGTGCGGTCTTGTTTTTTTACGTACGGCTGTCTCCGCTGT GCTGTTCGTGGCATATCTGACGGCTACGGCATCCAATGGATTTGGGCGTG CGTTTAGCCGCAAACGTTGACGGCACTCACATCTCCACAGAGGTGTTCCT CGTACAGCCCCAGGCTGTCCGAAGGGACTGGACGGCCCTGGTGCAGCAGA ACGCAGGGTACAAAACTTGTTTTCCTGCAGACGTATTCGCGTGTGTTGGG GTGTTGCAAACGTATGCAAGCTAAATAAGCTTTTTTCCAGCTCTGTCAAG AAAGGGCACCCGACGAGCGCTTTCCGCCACAGCTTGTTCACTGCTGGAAC ACTGCAGTAAGCAGACACGGGTCATCGACCGCATCAGAAACCAAACCTCG GTGATGAAACTTTTGGATTATTGCAAGTTCTCGCTCGGGTGTGTTTTCTT TTGGAGGGTGCATGCAGCAACAAGCACACAAAGCAAGAAAACATTTTCAG GTCGAAATCAACGCGTCCTCACAACCACGGCCAACCTTCTCCGGCTTGTA ATCGGTGTCCATTCAACCTTCGCCTCTGGCCATTCGTGTACCTCTTCCGT TCTCTCCCTCTTCCTGATTATTTTTTAGAAAATGTACGTACAATCGTTAC CTCTTTTGTTCAAAGTACGTACATTCACTGCATGCCACCCTTTATCGCAG TTGTGTGTTGCAGGCGATGTTAGTAATACCTACGTACGTCCGGTCGTAGA GGTACCCCCACTAACAACCAAGACTTAACGTATCTCGTAAACTTGCAGGA TGTGCATGGTACAGTACCATGATCCTCCGGCCGCGTCGGCTACAGCAGTC CTCAATGTTTTGTCTAGCTCACAGCAGCTACGGAGTGAAAACTCTTACAA GGCAGCAGCCGTGATTTCCATCCGCGCCTACCTACTACTGCTGTCCAACG GCATCTCTCTGCTCGAATCCCTTGGGTTTTTGTTTTTTCCAGCAAACTGC TCAGCCCGATACATGCTCCCCGGTTTCCGCCCCCACGTGTGTTTTCCCCG CGCAGGCAGGGACAGCTTAAGGAAGACATAATCAAGAATAATCCAGAGCA GTACGCCTCGTGGGTGGCAGACCCGTCCAATTTTAACTTTTCCGGAAGGT AAGCAAGCAATCCCGCCGCGGACGGCCTTGCTCTTTTAGTGGCAGCTGCA CTTAGTTCTGCAAAAGGAAAGGCTCACGATTTGCCGGGGAGTTAGTTGTC TGGGATGGTGGCGCGCCGCGTTCTTTTCCCGGTCGTGTTTCCCTGCTCAT TTTTTTTTGTAGAGAATATGTTTTGTACATGCGATGTCGCCAATGAGAAT GATCATTGTCTCCGTGAGCCGTGATTACTATAGTAAGCTTGTTTTTTAGG AAATATGCATACAATCGAAGAGAGACTTTCCATTGGAGATATAACCACAG TCGAAGTGGATGGGTTGAAGCTTCTTGCTGCGGCGTGACGCATCTCTCCA AATATATGTTTTTCGATATGTTTCCCGTCGGAAACCACCACCATCACCGC CGAAAACCCTGCCAACACCCATATTCCCGCACACCCGGCTGACAGATACC CCGCGAGAGACCTGTGGAAAAGGGCCAGCAACGCCTGGGACCAGATCCGT TCCCTCCAGTCCATCCAGGACCAGCCGCGGACCCTCGTCGTCGCCCACAA CGCCATCAACCAGGCGCTGCTGTGGACCGCCCTCGGCTGCGACACGACCT ACTTCCGAAAGCTGTCGTGGCCGAACTGCGCGGTGCTGGAGCTGCAGTGG CGGCGCGGGGAGGCGAGGGCGGAGCGGTACCGGTGGGTCGTGCCCGAGGC GTCGGGCTTCGTGGAGGCGGCGGACGCGGCGCGGCTTCTCAAGGACGGCG AAGACGACAACAGATACACCCTCTGAGGTTGGATCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1407:23337..27074+

>mRNA_E-siliculosus-1a_F_contig1407.2411.1 ID=mRNA_E-siliculosus-1a_F_contig1407.2411.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2411.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1932bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1407:23337..27074+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGAGACCAGGTCGACCGCGACCAGCCCCTGGAGGCTTCCTGATAGC
CCTGGCCACCGCCAGGAAGAGCTTCACCCGGGCCTTCTGCTTCGGTGGCG
GTAGTAGCAGCAGCGTTGGGAAGCGGCTGTTTCGGAGCACTGCGGCGGAA
TCATCTGCGAAAGCTGGCACCGGTCCCCGCGGTCTTGCAACCGCAACGCC
GCCAGAGTCGCCCTTTCCGCCCCCCGGAGACGACGACGAGCTCGAGTCGT
TCTTCTTGTTACGGCATGGGCAGACCAATTTCAACGCCATAGGGCGTATC
CAGATGCGGAGACCAGGTCGACCGCGACCAGCCCCTGGAGGCTTCCTGAT
AGCCCTGGCCACCGCCAGGAAGAGCTTCACCCGGGCCTTCTGCTTCGGTG
GCGGTAGTAGCAGCAGCGTTGGGAAGCGGCTGTTTCGGAGCACTGCGGCG
GAATCATCTGCGAAAGCTGGCACCGGTCCCCGCGGTCTTGCAACCGCAAC
GCCGCCAGAGTCGCCCTTTCCGCCCCCCGGAGACGACGACGAGCTCGAGT
CGTTCTTCTTGTTACGGCATGGGCAGACCAATTTCAACGCCATAGGGCGT
ATCCAGGGAACGTTAGATTCGTCAATCCTGACGGAGGAGGGCATCTCGCA
AGCGTTGGAGGCTGGCAAGACGCTTGCCTCATACGCCGACCTAGACCTGG
GTCCCACGGTGGTAGTTTCTCCGATGGGCCGGGCTCAGCAGACGCTGGAG
TGCGTGCGGCAGGAGCTTAGGAAGAGCGAGATTAGCAAGGACTTCGAGAC
CGTGGAAATCGTGCCAGACATTCGGGAAATCGAGCTCTTCGAGTGGGAAC
GTTAGATTCGTCAATCCTGACGGAGGAGGGCATCTCGCAAGCGTTGGAGG
CTGGCAAGACGCTTGCCTCATACGCCGACCTAGACCTGGGTCCCACGGTG
GTAGTTTCTCCGATGGGCCGGGCTCAGCAGACGCTGGAGTGCGTGCGGCA
GGAGCTTAGGAAGAGCGAGATTAGCAAGGACTTCGAGACCGTGGAAATCG
TGCCAGACATTCGGGAAATCGAGCTCTTCGAGTGGCAGGGACAGCTTAAG
GAAGACATAATCAAGAATAATCCAGAGCAGTACGCCTCGTGGGTGGCAGA
CCCGTCCAATTTTAACTTTTCCGGAAGGCAGGGACAGCTTAAGGAAGACA
TAATCAAGAATAATCCAGAGCAGTACGCCTCGTGGGTGGCAGACCCGTCC
AATTTTAACTTTTCCGGAAGATACCCCGCGAGAGACCTGTGGAAAAGGGC
CAGCAACGCCTGGGACCAGATCCGTTCCCTCCAGTCCATCCAGGACCAGC
CGCGGACCCTCGTCGTCGCCCACAACGCCATCAACCAGGCGCTGCTGTGG
ACCGCCCTCGGCTGCGACACGACCTACTTCCGAAAGCTGTCGTGGCCGAA
CTGCGCGGTGCTGGAGCTGCAGTGGCGGCGCGGGGAGGCGAGGGCGGAGC
GGTACCGGTGGGTCGTGCCCGAGGCGTCGGGCTTCGTGGAGGCGGCGGAC
GCGGCGCGGCTTCTCAAGGACGGCGAAGACGACAACAGATACACCCTCTG
AATACCCCGCGAGAGACCTGTGGAAAAGGGCCAGCAACGCCTGGGACCAG
ATCCGTTCCCTCCAGTCCATCCAGGACCAGCCGCGGACCCTCGTCGTCGC
CCACAACGCCATCAACCAGGCGCTGCTGTGGACCGCCCTCGGCTGCGACA
CGACCTACTTCCGAAAGCTGTCGTGGCCGAACTGCGCGGTGCTGGAGCTG
CAGTGGCGGCGCGGGGAGGCGAGGGCGGAGCGGTACCGGTGGGTCGTGCC
CGAGGCGTCGGGCTTCGTGGAGGCGGCGGACGCGGCGCGGCTTCTCAAGG
ACGGCGAAGACGACAACAGATACACCCTCTGA
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