mRNA_E-siliculosus-1a_F_contig1407.2410.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Match: D8LFT9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT9_ECTSI) HSP 1 Score: 515 bits (1326), Expect = 2.350e-173 Identity = 264/267 (98.88%), Postives = 266/267 (99.63%), Query Frame = 3
Query: 21 MSEQPSFLASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALDPDSPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMTGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAERRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWLMGLGA 821
MSEQPSF+ASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALDPDSPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGM GFYTGYLTTVVREIPFSFIQFPIYEGLKAAWA+RRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWLMGLGA
Sbjct: 1 MSEQPSFVASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALDPDSPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMMGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAKRRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWLMGLGA 267
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Match: A0A835YJ97_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ97_9STRA) HSP 1 Score: 346 bits (888), Expect = 2.670e-108 Identity = 178/269 (66.17%), Postives = 212/269 (78.81%), Query Frame = 3
Query: 21 MSEQPSFLASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHAL-DPDSPLAHMAAASVAETMACLVRVPTENVKQKMQAGL---HGTATETMNAILKNSGMTGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAERRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWLMGL 815
M QPSF+ +L++GG+AGT+VDVAL+PLDTIKTRLQS +GF+K+GG +GVYNGLSAAAVGSAPGAA FFS+YE K L DP +P HMAAAS AE +ACLVRVPTENVKQKMQAG+ +A T +IL SG GFY GY+TT++REIPFS IQFP+YE +KA W RRG P+ Y+AA CGS+SGAFA A+TTP DVVKTRLMLG DKHG Y+G+ TF+R+ +EGAAAL G+ PRV WIGIGGFVFFG YE +K L G+
Sbjct: 1 MPHQPSFVLALVSGGIAGTSVDVALFPLDTIKTRLQSSQGFIKAGGFKGVYNGLSAAAVGSAPGAAAFFSTYEGLKVRLGDPSAPSTHMAAASGAEIVACLVRVPTENVKQKMQAGVGTSSSSAVATCRSILSASGARGFYAGYMTTIMREIPFSLIQFPLYERMKAVWGRRRGAPVHSYQAAVCGSLSGAFAGALTTPFDVVKTRLMLGADKHGLPYKGMVPTFQRIVADEGAAALFGGIVPRVMWIGIGGFVFFGAYEASKRTLAGV 269
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Match: A0A7S2Y3T2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3T2_9STRA) HSP 1 Score: 319 bits (818), Expect = 5.100e-98 Identity = 169/264 (64.02%), Postives = 203/264 (76.89%), Query Frame = 3
Query: 27 EQPSFLASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKH----ALDPD-SPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMTGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAERRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLG-TDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKT 800
E+ SFL +LL+GG AGT+VDVAL+PLDTIKTRLQS EGFVK+GG RG+Y GLSAAA GSAPGAALFFSSYEA+K D +PL HM +ASV ET+ACLVRVPTE VKQ+MQ G +G+ E ++ I+K G GFYTGYLTTV REIPFSFIQFP+YEGLK W+E +G + P ++A CGS+SG AA +TTP+DVVKTRLMLG D HG Y G+ T +++Y +EG L +G +PRVTWI IGGFVFFG YE AK+
Sbjct: 5 EKNSFLVNLLSGGCAGTSVDVALFPLDTIKTRLQSSEGFVKAGGFRGIYRGLSAAAAGSAPGAALFFSSYEASKEWGTKTFDEKYAPLVHMGSASVGETVACLVRVPTEVVKQRMQTGQYGSFREAVSTIMKTEGPGGFYTGYLTTVAREIPFSFIQFPMYEGLKKYWSEWQGKEVGPSQSALCGSISGGIAAGITTPLDVVKTRLMLGQADLHGVKYEGMLSTLQKIYVQEGMPKLFAGFSPRVTWISIGGFVFFGSYEAAKS 268
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Match: A0A7S1UH46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH46_9STRA) HSP 1 Score: 317 bits (812), Expect = 5.140e-97 Identity = 166/260 (63.85%), Postives = 197/260 (75.77%), Query Frame = 3
Query: 48 SLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALDP---DSPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMTGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWA-ERRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWLMGL 815
SL++GG+AGT VDV L+PLDTIKTRLQ+PEGF+KSGG G++ G+SAAAVGSAPGA+LFF SYE AK L+P +P+AHMAAAS+ E AC+VRVPTE +KQ+MQA + TA + +L G+ G + GY +TV REIPFS IQFP+YE LK WA + G L PYE+A CGSVSGAF+AAVTTP+DVVKTRLMLG DK G Y G+ TFRRV +EGAAAL GV PRV WI IGGF FFG YEG K LMG+
Sbjct: 25 SLISGGVAGTTVDVVLFPLDTIKTRLQAPEGFMKSGGFNGLFKGVSAAAVGSAPGASLFFMSYETAKQNLEPRMESAPVAHMAAASLGEVAACVVRVPTEIIKQRMQANMFPTAQGALRNVLDTEGVLGLWRGYGSTVAREIPFSLIQFPLYEHLKKVWAASKASGELRPYESALCGSVSGAFSAAVTTPLDVVKTRLMLGADKAGVAYDGMASTFRRVVADEGAAALFKGVQPRVMWISIGGFFFFGAYEGTKASLMGM 284
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Match: A0A1V9ZD58_9STRA (S-adenosylmethionine mitochondrial carrier protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZD58_9STRA) HSP 1 Score: 315 bits (806), Expect = 2.630e-96 Identity = 161/267 (60.30%), Postives = 197/267 (73.78%), Query Frame = 3
Query: 24 SEQPSFLASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALD------PDSPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMTGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAERRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWL 806
S SF SL+AGG+AGT+VDVAL+PLDTIKTRLQS +GF+K+GG +GVY GLSAAA GSAPGAALFFS+YE +K L +SPL HM+AA+ ET ACLVRVPTE VKQ MQ G ++ + +G+ GFY GY + + REIPFSFIQFP++EGLKA W+++RG + P++ A CGS+SG AA++TTP+DVVKTRLMLG D HG YRG+ DTF RVYT+EG L SG+ PR WI IGGFVFFG YE A +L
Sbjct: 5 SSSKSFFTSLIAGGIAGTSVDVALFPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGAALFFSTYETSKEVLQNKLPHLSNSPLIHMSAAACGETAACLVRVPTEIVKQNMQTGALSGFQHSIKTLYAANGIAGFYRGYWSMLAREIPFSFIQFPLWEGLKATWSKQRGEQVSPFQGAICGSISGGIAASITTPLDVVKTRLMLGKDAHGVEYRGMKDTFMRVYTDEGWQTLFSGIKPRTMWISIGGFVFFGAYESASAFL 271
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Match: A0A024U5F9_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024U5F9_9STRA) HSP 1 Score: 314 bits (804), Expect = 5.480e-96 Identity = 164/263 (62.36%), Postives = 193/263 (73.38%), Query Frame = 3
Query: 36 SFLASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALDP------DSPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMTGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAERRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWL 806
SFL SL+AGGMAGT VDVALYPLDTIKTRLQS +GF+K+GG +GVY GLSAAA GSAPGAALFFS+YE K L DSP+ HMA+A++ ET CLVRVPTE VKQ +Q G + E++ +I SG+ GFY GY + + REIPFSFIQFP++EG+K AW +G + P + A CGS+SG FAA VTTP+DV+KTRLMLG D G YRG+ D F RVYT+EG L SGV PR TWI IGGFVFFGVYE A L
Sbjct: 11 SFLTSLIAGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGAALFFSTYETTKRFLQQLQPHLADSPVVHMASAAMGETAGCLVRVPTEIVKQNLQTGAFQSFQESIRSIYGTSGVAGFYRGYWSLLAREIPFSFIQFPLWEGMKTAWGHHQGEIVSPVQGAVCGSISGGFAAFVTTPLDVIKTRLMLGKDAQGVEYRGMRDAFTRVYTQEGWQTLFSGVKPRTTWITIGGFVFFGVYEQASATL 273
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Match: A0A067C9P7_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C9P7_SAPPC) HSP 1 Score: 303 bits (777), Expect = 4.430e-92 Identity = 160/263 (60.84%), Postives = 191/263 (72.62%), Query Frame = 3
Query: 36 SFLASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALDP------DSPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMTGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAERRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWL 806
SF SL+AGG+AGT+VDVAL+PLDTIKTRLQS +GF+K+GG +GVY GLSAAA GSAPGAALFFS+YE AK AL +SP HM AA+ ET ACLVRVPTE VKQ MQ G ++ + +G+ GFY GY + + REIPFSFIQFP++EGLKA W+ ++G + + A CGS+SG AA++TTP+DVVKTRLMLG D +G YRG+ DTF RVYTEEG L SGV PR WI IGGFVFFG YE A L
Sbjct: 10 SFFTSLVAGGIAGTSVDVALFPLDTIKTRLQSSQGFIKAGGFKGVYKGLSAAAAGSAPGAALFFSTYETAKEALQTHLPHMANSPFIHMGAAACGETAACLVRVPTEIVKQNMQTGALNGFQHSIKTLHAANGIAGFYRGYWSMLAREIPFSFIQFPLWEGLKATWSAKQGEQVSALQGALCGSISGGIAASITTPLDVVKTRLMLGKDANGVEYRGMKDTFMRVYTEEGWQRLFSGVKPRTMWISIGGFVFFGAYETASASL 272
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Match: W7TQP7_9STRA (S-adenosylmethionine mitochondrial carrier protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQP7_9STRA) HSP 1 Score: 302 bits (774), Expect = 2.430e-91 Identity = 158/255 (61.96%), Postives = 186/255 (72.94%), Query Frame = 3
Query: 57 AGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALDPD-----SPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMTGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAERRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWL 806
AGG AGTAVD++L+PLDTIKTRLQ+ EGF K+GG RGVY GL AAA GSAPGAALFFS YE K +P +PL HM AASV ET ACL+RVPTENVKQ +QAG + T E + I K G+ GFY G+L+TV REIPFSF+QFP+YE KA WA+ +G P+ P +AA CGSV+GA AAAVTTP+DV+KTRL+L D G Y G+ D FRRV EEG L +GV PRV WI IGGFV+FG YE + L
Sbjct: 19 AGGAAGTAVDMSLFPLDTIKTRLQASEGFWKAGGFRGVYKGLGAAAAGSAPGAALFFSIYETIKIEAEPLVSDRLAPLVHMVAASVGETGACLIRVPTENVKQNLQAGRYNTNAEALRTIWKQEGVMGFYKGFLSTVFREIPFSFLQFPMYEAAKAFWAQEQGRPVSPLQAAACGSVAGAVAAAVTTPLDVIKTRLILEKDMQGRKYHGIVDVFRRVVAEEGPMTLFAGVAPRVMWITIGGFVYFGAYEEVRRLL 273
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Match: A0A6G0XXM9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXM9_9STRA) HSP 1 Score: 300 bits (768), Expect = 4.800e-91 Identity = 155/253 (61.26%), Postives = 187/253 (73.91%), Query Frame = 3
Query: 66 MAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHALDP------DSPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMTGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAERRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWL 806
MAGT VDVALYPLDTIKTRLQS +GF+K+GG +GVY GLSAAA GSAPGAALFFS+YE+ K L DSP HMA+A++ ET CL+RVPTE VKQ +Q G + T E++++I N G+ GFY GY + + REIPFSFIQFP++EGLKA+W + +G P+ P + A CGS+SG AA +TTP+DVVKTRLMLG D G Y+G+ D F RVYT+EG L SGV PR WI IGGFVFFGVYE A L
Sbjct: 1 MAGTGVDVALYPLDTIKTRLQSSQGFIKAGGFKGVYKGLSAAAAGSAPGAALFFSTYESTKSFLQKQNPHLADSPAIHMASAAMGETAGCLIRVPTEIVKQNLQTGAYKTFQESVSSIYANKGIAGFYRGYWSLLAREIPFSFIQFPLWEGLKASWGKYQGEPVSPVQGAICGSISGGIAAFITTPLDVVKTRLMLGKDAQGVEYKGMRDAFTRVYTQEGWQTLFSGVKPRTMWITIGGFVFFGVYEQASASL 253
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Match: A0A7S1EJZ1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EJZ1_HEMAN) HSP 1 Score: 296 bits (757), Expect = 3.290e-89 Identity = 156/265 (58.87%), Postives = 188/265 (70.94%), Query Frame = 3
Query: 27 EQPSFLASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALFFSSYEAAKHAL-----DPDSPLAHMAAASVAETMACLVRVPTENVKQKMQAGLHGTATETMNAILKNSGMTGFYTGYLTTVVREIPFSFIQFPIYEGLKAAWAERRGGPLEPYEAAGCGSVSGAFAAAVTTPMDVVKTRLMLGTDKHGETYRGLGDTFRRVYTEEGAAALMSGVTPRVTWIGIGGFVFFGVYEGAKTWL 806
++ SF +L+AGG AGTAVDVAL+P+DTIKTRLQ+PEGF+KSGG RG+YNGL++AA GSAPGAALFFS+YE K + + P +M A+S E AC+VRVPTENVKQKMQAG T E +++I GM GFY GY+ TV REIPF IQFP+YEGLK WA +G P ++A CGS++G AAA TTP+DVVKTRLMLG D G Y G+ +TF RVY E G L +GV PR WI IGG VFFG YE +K L
Sbjct: 9 KETSFRVALVAGGAAGTAVDVALFPIDTIKTRLQAPEGFLKSGGFRGIYNGLASAAAGSAPGAALFFSTYEMMKKRMMDRIEERYHPACYMGASSCGEIAACMVRVPTENVKQKMQAGHFATNGEALSSIWNARGMMGFYQGYMMTVFREIPFVLIQFPLYEGLKKRWANHQGHASTPLQSALCGSLAGGIAAAATTPLDVVKTRLMLGKDSEGVAYDGIANTFSRVYAEGGVGRLFAGVGPRTMWISIGGCVFFGAYEKSKQLL 273 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1407.2410.1 >prot_E-siliculosus-1a_F_contig1407.2410.1 ID=prot_E-siliculosus-1a_F_contig1407.2410.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=268bp MSEQPSFLASLLAGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVback to top mRNA from alignment at E-siliculosus-1a_F_contig1407:3014..11539- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1407.2410.1 ID=mRNA_E-siliculosus-1a_F_contig1407.2410.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8526bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1407:3014..11539- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1407:3014..11539- >mRNA_E-siliculosus-1a_F_contig1407.2410.1 ID=mRNA_E-siliculosus-1a_F_contig1407.2410.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1608bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1407:3014..11539- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |