mRNA_E-siliculosus-1a_F_contig1407.2409.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1407.2409.1
Unique NamemRNA_E-siliculosus-1a_F_contig1407.2409.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1407.2409.1 vs. uniprot
Match: D8LCY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY9_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 8.850e-126
Identity = 198/214 (92.52%), Postives = 203/214 (94.86%), Query Frame = 1 
Query:    1 MGAFLCLEEREYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLHESGTEESPAYDFDPVTDAMLAITKTSSEGRGDGGTDVFGETSDEDAKTQLLDLVVLLNEALPEGLSCPGSLHFVRILADQSGLSDTCTDQELEDFFDQTDKGVRTAVLNGLLRTLSPSDIARGAF 642
            MGAFLCLEE EYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPG MD LTNEQICLLPAACV DSI RL ESGTEESPAYDF+  TDAMLAITKTSSEGRGDGG+D+FGETSDEDAKTQLL LVVLLNEALPEGLSCPGSLHF+RILADQSGLSDT TDQELE+FFDQTDK VRTAVLNGLLRTLSPSDIARGAF
Sbjct:  808 MGAFLCLEEMEYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGFMDGLTNEQICLLPAACVGDSICRLQESGTEESPAYDFNTATDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLLALVVLLNEALPEGLSCPGSLHFIRILADQSGLSDTRTDQELENFFDQTDKRVRTAVLNGLLRTLSPSDIARGAF 1021
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BLAST of mRNA_E-siliculosus-1a_F_contig1407.2409.1 vs. uniprot
Match: D8LFU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFU0_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.000e-103
Identity = 158/177 (89.27%), Postives = 162/177 (91.53%), Query Frame = 1 
Query:   31 EYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLHESGTEESPAYDFDPVTDAMLAITKTSSEGRGDGGTDVFGETSDEDAKTQLLDLVVLLNEALPEGLSCPGSLHFVRILADQSGLSDTCTDQELEDFFDQ 561
            EYPR RAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPG MD LTNEQICLLPAACV DSI RL ESGTEESPA DF+ VTDAMLAITKTSSEGRGDGG+D+FGETSDEDAKTQL  LVVLLN ALPEGLSCP SLHF+RILADQSGL  T TDQELEDFFDQ
Sbjct:    2 EYPRYRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGFMDGLTNEQICLLPAACVGDSICRLLESGTEESPACDFNTVTDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLFALVVLLNNALPEGLSCPESLHFIRILADQSGLCGTRTDQELEDFFDQ 178
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BLAST of mRNA_E-siliculosus-1a_F_contig1407.2409.1 vs. uniprot
Match: A0A6H5JXL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL9_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 9.020e-72
Identity = 137/214 (64.02%), Postives = 143/214 (66.82%), Query Frame = 1 
Query:    1 MGAFLCLEEREYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLHESGTEESPAYDFDPVTDAMLAITKTSSEGRGDGGTDVFGETSDEDAKTQLLDLVVLLNEALPEGLSCPGSLHFVRILADQSGLSDTCTDQELEDFFDQTDKGVRTAVLNGLLRTLSPSDIARGAF 642
            MG FLCLEEREYPRCRAGYEN+EEGQAKWALSVIGKIADAIDAPTHTVTLAA+TLGVAGGVPGLMDAL+NEQI LLPAACVADSI RL ESGTEESPAYD +  TDAML ITKTSSEGRGDGG                                                           + F+QTDK VRTAVL  LLRTLSPSDIARGAF
Sbjct:  689 MGVFLCLEEREYPRCRAGYENLEEGQAKWALSVIGKIADAIDAPTHTVTLAAITLGVAGGVPGLMDALSNEQIYLLPAACVADSICRLQESGTEESPAYDLNRATDAMLTITKTSSEGRGDGGA---------------------------------------------------------RELFNQTDKRVRTAVLEDLLRTLSPSDIARGAF 845
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BLAST of mRNA_E-siliculosus-1a_F_contig1407.2409.1 vs. uniprot
Match: A0A6H5K4P3_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P3_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 2.850e-59
Identity = 114/214 (53.27%), Postives = 145/214 (67.76%), Query Frame = 1 
Query:    1 MGAFLCLEEREYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLHESGTEESPAYDFDPVTDAMLAITKTSSEGRGDGGTDVFGETSDEDAKTQLLDLVVLLNEALPEGLSCPGSLHFVRILADQSGLSDTCTDQELEDFFDQTDKGVRTAVLNGLLRTLSPSDIARGAF 642
            + A LCLEE+ YPRCR GYE++ EG+ +WALSVI +I D I+ PT  V LAA+TLGV   +PG +   ++E +CLLPAACV+ +I RL +   +ES + D   + D MLAITK +SEGRG  G  VFG+    D KT LL L   L   LPE L+CPG + ++ + A+QSGL  T T QEL   +D+ D+ VR   LNGLLRTLSPSDIARGAF
Sbjct:  838 VDAHLCLEEKAYPRCREGYESIPEGKVRWALSVIREITDTINVPTPIVALAAITLGVTAAIPGFLSRRSDEDLCLLPAACVSHAISRLDK--LDES-SVDLYGIMDQMLAITKAASEGRGKNGGPVFGQPGAGDPKTILLALFFYLMLTLPEELTCPGPMDYMEVFAEQSGLDHTLTGQELGCVYDEYDRFVRAVALNGLLRTLSPSDIARGAF 1048
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BLAST of mRNA_E-siliculosus-1a_F_contig1407.2409.1 vs. uniprot
Match: D7G7D9_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D9_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.050e-29
Identity = 80/214 (37.38%), Postives = 102/214 (47.66%), Query Frame = 1 
Query:    1 MGAFLCLEEREYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLHESGTEESPAYDFDPVTDAMLAITKTSSEGRGDGGTDVFGETSDEDAKTQLLDLVVLLNEALPEGLSCPGSLHFVRILADQSGLSDTCTDQELEDFFDQTDKGVRTAVLNGLLRTLSPSDIARGAF 642
            + A+LCLEER YPRCR GY+++ EG+                                                          + +L ES        D     D ML ITK +SEGRG  G  VFG+   +D KT LL L   L   +PE L+CPG + ++ + A+QSG+  T T QEL   +D+ D+ VR A LNGLLRTLSPSDIARGAF
Sbjct:  777 VDAYLCLEERAYPRCREGYKSIPEGKVS-------------------------------------------------------RLDKLDESSV------DLYGTMDQMLVITKAASEGRGKNGGPVFGQPGADDPKTILLALFYYLMLTMPEELTCPGPMDYMEVFAEQSGIDHTLTGQELGGVYDEYDRFVRAAALNGLLRTLSPSDIARGAF 929
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1407.2409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCY9_ECTSI8.850e-12692.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFU0_ECTSI2.000e-10389.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXL9_9PHAE9.020e-7264.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4P3_9PHAE2.850e-5953.27Protein kinase domain-containing protein n=2 Tax=E... [more]
D7G7D9_ECTSI2.050e-2937.38N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1407contigE-siliculosus-1a_F_contig1407:1152..1793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size642
Model size644
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927921.9371924-CDS-E-siliculosus-1a_F_contig1407:1151..17931622927921.9371924-CDS-E-siliculosus-1a_F_contig1407:1151..1793Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1407 1152..1793 +
1696318738.1093-CDS-E-siliculosus-1a_F_contig1407:1151..17931696318738.1093-CDS-E-siliculosus-1a_F_contig1407:1151..1793Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1407 1152..1793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1407.2409.1prot_E-siliculosus-1a_F_contig1407.2409.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1407 1152..1793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1407.2409.1

>prot_E-siliculosus-1a_F_contig1407.2409.1 ID=prot_E-siliculosus-1a_F_contig1407.2409.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=214bp
MGAFLCLEEREYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTL
AAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLHESGTEESPAYD
FDPVTDAMLAITKTSSEGRGDGGTDVFGETSDEDAKTQLLDLVVLLNEAL
PEGLSCPGSLHFVRILADQSGLSDTCTDQELEDFFDQTDKGVRTAVLNGL
LRTLSPSDIARGAF
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mRNA from alignment at E-siliculosus-1a_F_contig1407:1152..1793+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1407.2409.1 ID=mRNA_E-siliculosus-1a_F_contig1407.2409.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1407:1152..1793+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCGCCTTCCTCTGCCTCGAAGAGAGAGAGTACCCCAGATGCAGGGC
GGGTTACGAGAACGTTGAGGAAGGCCAGGCTAAGTGGGCTCTGTCGGTCA
TCGGAAAGATCGCGGACGCGATCGATGCGCCGACGCACACCGTCACGCTT
GCGGCCATGACCCTCGGAGTGGCCGGCGGCGTGCCGGGACTCATGGACGC
GCTGACCAATGAGCAGATCTGCCTCCTTCCCGCGGCGTGTGTGGCGGACT
CCATCTATCGACTGCACGAATCTGGGACTGAGGAGAGCCCCGCCTATGAC
TTCGACCCGGTGACAGACGCGATGCTGGCGATCACGAAGACCTCGTCGGA
GGGCAGGGGTGACGGCGGTACGGACGTGTTTGGCGAGACAAGCGACGAAG
ACGCCAAGACTCAGTTGCTCGATCTCGTCGTCCTTCTGAACGAAGCCTTG
CCGGAAGGCCTCTCCTGCCCGGGGTCCCTGCACTTTGTACGCATCCTCGC
CGACCAGTCAGGCCTCTCCGACACCTGCACCGACCAGGAGCTCGAGGACT
TCTTCGACCAGACCGACAAGGGCGTTCGTACCGCGGTCTTGAACGGTTTG
CTCCGCACGCTTTCGCCGTCGGACATAGCGCGCGGCGCCTTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1407:1152..1793+

>mRNA_E-siliculosus-1a_F_contig1407.2409.1 ID=mRNA_E-siliculosus-1a_F_contig1407.2409.1|Name=mRNA_E-siliculosus-1a_F_contig1407.2409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1284bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1407:1152..1793+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCGCCTTCCTCTGCCTCGAAGAGAGAGAGTACCCCAGATGCAGGGC
GGGTTACGAGAACGTTGAGGAAGGCCAGGCTAAGTGGGCTCTGTCGGTCA
TCGGAAAGATCGCGGACGCGATCGATGCGCCGACGCACACCGTCACGCTT
GCGGCCATGACCCTCGGAGTGGCCGGCGGCGTGCCGGGACTCATGGACGC
GCTGACCAATGAGCAGATCTGCCTCCTTCCCGCGGCGTGTGTGGCGGACT
CCATCTATCGACTGCACGAATCTGGGACTGAGGAGAGCCCCGCCTATGAC
TTCGACCCGGTGACAGACGCGATGCTGGCGATCACGAAGACCTCGTCGGA
GGGCAGGGGTGACGGCGGTACGGACGTGTTTGGCGAGACAAGCGACGAAG
ACGCCAAGACTCAGTTGCTCGATCTCGTCGTCCTTCTGAACGAAGCCTTG
CCGGAAGGCCTCTCCTGCCCGGGGTCCCTGCACTTTGTACGCATCCTCGC
CGACCAGTCAGGCCTCTCCGACACCTGCACCGACCAGGAGCTCGAGGACT
TCTTCGACCAGACCGACAAGGGCGTTCGTACCGCGGTCTTGAACGGTTTG
CTCCGCACGCTTTCGCCGTCGGACATAGCGCGCGGCGCCTTCATGGGCGC
CTTCCTCTGCCTCGAAGAGAGAGAGTACCCCAGATGCAGGGCGGGTTACG
AGAACGTTGAGGAAGGCCAGGCTAAGTGGGCTCTGTCGGTCATCGGAAAG
ATCGCGGACGCGATCGATGCGCCGACGCACACCGTCACGCTTGCGGCCAT
GACCCTCGGAGTGGCCGGCGGCGTGCCGGGACTCATGGACGCGCTGACCA
ATGAGCAGATCTGCCTCCTTCCCGCGGCGTGTGTGGCGGACTCCATCTAT
CGACTGCACGAATCTGGGACTGAGGAGAGCCCCGCCTATGACTTCGACCC
GGTGACAGACGCGATGCTGGCGATCACGAAGACCTCGTCGGAGGGCAGGG
GTGACGGCGGTACGGACGTGTTTGGCGAGACAAGCGACGAAGACGCCAAG
ACTCAGTTGCTCGATCTCGTCGTCCTTCTGAACGAAGCCTTGCCGGAAGG
CCTCTCCTGCCCGGGGTCCCTGCACTTTGTACGCATCCTCGCCGACCAGT
CAGGCCTCTCCGACACCTGCACCGACCAGGAGCTCGAGGACTTCTTCGAC
CAGACCGACAAGGGCGTTCGTACCGCGGTCTTGAACGGTTTGCTCCGCAC
GCTTTCGCCGTCGGACATAGCGCGCGGCGCCTTC
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