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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1406.2406.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE) HSP 1 Score: 110 bits (276), Expect = 2.380e-24 Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 2
Query: 461 GVRTGYSGAANGAREANGRGARLPARGTPTGLQVRVRPGAGPVVAPTASAATVPRASGGRGKGKES 658
GVRTGYSGAANGA EANGRGARLPA+GTPTGLQVR+RPGA PVVAP+ASAATVPRASGG GKGKES
Sbjct: 65 GVRTGYSGAANGASEANGRGARLPAKGTPTGLQVRIRPGAAPVVAPSASAATVPRASGGMGKGKES 130
BLAST of mRNA_E-siliculosus-1a_F_contig1406.2406.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI) HSP 1 Score: 103 bits (258), Expect = 5.960e-22 Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1
Query: 193 LNPDSNNNQARSLSPYHGGYRAFPASLDALAVTDPPPALPVVSKFAASGQG 345
LNPDSNNNQARSLSPYHGGYRAFPASLDALAVTDPPPALPVVSKFAASGQG
Sbjct: 36 LNPDSNNNQARSLSPYHGGYRAFPASLDALAVTDPPPALPVVSKFAASGQG 86
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 570 |
| Model size | 661 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko00001,ko01000,ko03036 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | K |
| EggNOG OGs | COG1231@1,COG2940@1,KOG0029@2759,KOG1084@2759 |
| EggNOG free text desc. | SET domain |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006476,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016575,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0022622,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0035601,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0051276,GO:0051568,GO:0071704,GO:0071840,GO:0098732,GO:0099402,GO:1901564 |
| KEGG Pathway | ko04714,map04714 |
| KEGG ko | ko:K11450 |
| Seed eggNOG ortholog | 2880.D8LQQ1 |
| Seed ortholog evalue | 1.6e-20 |
| Seed ortholog score | 106.3 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927921.3352232-UTR-E-siliculosus-1a_F_contig1406:7974..8064 | 1622927921.3352232-UTR-E-siliculosus-1a_F_contig1406:7974..8064 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1406 7975..8064 - |
| 1696318737.7707036-UTR-E-siliculosus-1a_F_contig1406:7974..8064 | 1696318737.7707036-UTR-E-siliculosus-1a_F_contig1406:7974..8064 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1406 7975..8064 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1406.2406.1 >prot_E-siliculosus-1a_F_contig1406.2406.1 ID=prot_E-siliculosus-1a_F_contig1406.2406.1|Name=mRNA_E-siliculosus-1a_F_contig1406.2406.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=190bp
MDAARKAAAARKGGAAAQSSADRSRGGGGGGAASLNPDSNNNQARSLSPY
HGGYRAFPASLDALAVTDPPPALPVVSKFAASGQGGPPPSRAASLAAAAA
AAEAAAKASSSARSIAAHGGGDIGGEDGLQRRRQRGEGGERTWRTPPGKR
DTNGPPSQSPARRWACRRPYRLRRHRAEGKRRQGQGEREQ back to topmRNA from alignment at E-siliculosus-1a_F_contig1406:6113..8064- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1406.2406.1 ID=mRNA_E-siliculosus-1a_F_contig1406.2406.1|Name=mRNA_E-siliculosus-1a_F_contig1406.2406.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1952bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1406:6113..8064- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGTGCTGCCATTGTTGATAGTAAAAAGGCAAGAGGGGGGGGTTCTTGAC
CGTGGTCACTACTTCACGGCGTCCTCGATTGGCGGTTCCCATGGACGCGG
CGAGGAAAGCAGCCGCGGCGAGGAAAGGAGGAGCTGCGGCTCAATCTTCT
GCTGACAGGTCCCGCGGAGGAGGAGGCGGCGGAGCGGCATCTTTGAATCC
TGACAGCAACAACAACCAGGCCCGGTCTCTCTCGCCGTACCACGGCGGAT
ACAGGGCCTTCCCCGCCTCTCTCGATGCTCTCGCCGTTACCGATCCCCCG
CCAGCTCTTCCTGTGGTGTCGAAGTTCGCGGCTTCTGGGCAGGGCGGCCC
TCCCCCGTCCAGGGCTGCTTCCCTAGGTATAACGCTTTTTGGTCCCTCCC
GTCGTCGTCGGACACACAGTTCCAATTTCCAATCAAGAAGACTGGAAGGA
CTCTGTTCTTTTGAAATTTGCTGCCACTCTGGCGTGCGTGCTCTCGCGCA
CTCGACCTTGGTGGTTGCTCTGCCCTCTCCTCCCATGCTAGCGGCGAAGA
AGTTGGCGGTAGGTTTTGTGGATAGAAGCTTCTCGGCCTCGGGGCAAGCC
GATCTTGAATGTGTGCCTTTTAGACTGTGCTTGCTGAAAGAAGACGGAGG
TCATGCCTTGCAAGAGTGCGATGTACGTACACTGTAGTTGCGCGGTAAAT
ACCACAGCTGCGTGCTTGGTTTCGAAGCGCTGGCACAGACAGGCGTGACA
GTTCTGGCTCATGGGCAGAGGCACCCCGGTTACTTTTGATCAACCGCTGT
ACACTATATTCTTCAAGGCTTTGTTGCTTACATGCACACCTCTCATGACA
TTGTTTGGAGACCCACACGCGCGGGCTCCATCGTCTCTCGCTGCGATTCA
AATTTTAATTTTCGTATCATGTTCTTGATTGCGCACCCCCTTGCCCCCCA
CCTTTGCCCACTACTGGTTTTCCCACGGGCCCGCGCCCATCCATCCACGG
ATGGATGTGGAATCTCAACGGGCGGTATATCCTGTCTCAGTAGCTGCTGT
AGGGCTTGCGCTAACCTGCTGCCAGTTTGGGGCAAGGCTAGATAGTGCTG
TAGAGATTTTTTTTTTTGAGTTGCACCACTTTTGACCGCCCCCGGACTGA
GTGCGTTCCATACCAGGGTGTTCACCCACCTTATCAAATCGATCGTATCT
ATGATAAGTCATCTCCACGAAAGTAAAAAAAAACTAGACGGGGGGCGCTG
TCACGCCTCTCTCGATCCACTAAAAGCACAAACAGCATGGAATCCAAACA
AATCGTATTTTTGACGAGCGCAACCAATACCAACCCCCGGGCTAGACCGA
CTCAACCAAATGACTCTCTACTGCTGTATTTTACAAACGCAACAAACAAA
CACAGCGGCGGCGGCGGCCGCGGCAGAAGCAGCGGCCAAGGCGTCTTCCT
CGGCGAGATCCATCGCCGCACACGGCGGCGGTGCCGCCGCCGCCGCCGCC
GCCGCCGCCGCCGCCTCTTCTTCTCTGCGAGGGGGCGGCGGCGCTCAGCC
CCCGGCCTTCATGTCGGTACCGTACGCGCTCCTGCGGCCGCAGCCCGCCC
CGTTCTCCGCCCCTCGGCCGGCGGCGCTGTCCGCCGGATACCAGGGCGAC
GGCGGCAGCGGGGTAGAAGCGGGCCCGACACGAGCGGCAGCACATGCAGC
GGCGGCTGCGGCGGCTGCGGCGACGGCGGCGGCGGCGGCGGCGGCGACAT
CGGGGGTGAGGACGGGCTACAGCGGCGCCGCCAACGGGGCGAGGGAGGCG
AACGGACGTGGCGCACGCCTCCCGGCAAGAGGGACACCAACGGGCCTCCA
AGTCAGAGTCCGGCCCGGCGCTGGGCCTGTCGTCGCCCCTACCGCCTCCG
CCGCCACCGTGCCGAGGGCAAGCGGCGGCAGGGGCAAGGGGAAAGAGAGC
AG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1406:6113..8064- >mRNA_E-siliculosus-1a_F_contig1406.2406.1 ID=mRNA_E-siliculosus-1a_F_contig1406.2406.1|Name=mRNA_E-siliculosus-1a_F_contig1406.2406.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1406:6113..8064- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGCGGCGAGGAAAGCAGCCGCGGCGAGGAAAGGAGGAGCTGCGGC
TCAATCTTCTGCTGACAGGTCCCGCGGAGGAGGAGGCGGCGGAGCGGCAT
CTTTGAATCCTGACAGCAACAACAACCAGGCCCGGTCTCTCTCGCCGTAC
CACGGCGGATACAGGGCCTTCCCCGCCTCTCTCGATGCTCTCGCCGTTAC
CGATCCCCCGCCAGCTCTTCCTGTGGTGTCGAAGTTCGCGGCTTCTGGGC
AGGGCGGCCCTCCCCCGTCCAGGGCTGCTTCCCTAGATGGACGCGGCGAG
GAAAGCAGCCGCGGCGAGGAAAGGAGGAGCTGCGGCTCAATCTTCTGCTG
ACAGGTCCCGCGGAGGAGGAGGCGGCGGAGCGGCATCTTTGAATCCTGAC
AGCAACAACAACCAGGCCCGGTCTCTCTCGCCGTACCACGGCGGATACAG
GGCCTTCCCCGCCTCTCTCGATGCTCTCGCCGTTACCGATCCCCCGCCAG
CTCTTCCTGTGGTGTCGAAGTTCGCGGCTTCTGGGCAGGGCGGCCCTCCC
CCGTCCAGGGCTGCTTCCCTAGCGGCGGCGGCGGCCGCGGCAGAAGCAGC
GGCCAAGGCGTCTTCCTCGGCGAGATCCATCGCCGCACACGGCGGCGGCG
GCGGCGGCGGCCGCGGCAGAAGCAGCGGCCAAGGCGTCTTCCTCGGCGAG
ATCCATCGCCGCACACGGCGGCGGCGACATCGGGGGTGAGGACGGGCTAC
AGCGGCGCCGCCAACGGGGCGAGGGAGGCGAACGGACGTGGCGCACGCCT
CCCGGCAAGAGGGACACCAACGGGCCTCCAAGTCAGAGTCCGGCCCGGCG
CTGGGCCTGTCGTCGCCCCTACCGCCTCCGCCGCCACCGTGCCGAGGGCA
AGCGGCGGCAGGGGCAAGGGGAAAGAGAGCAGCGACATCGGGGGTGAGGA
CGGGCTACAGCGGCGCCGCCAACGGGGCGAGGGAGGCGAACGGACGTGGC
GCACGCCTCCCGGCAAGAGGGACACCAACGGGCCTCCAAGTCAGAGTCCG
GCCCGGCGCTGGGCCTGTCGTCGCCCCTACCGCCTCCGCCGCCACCGTGC
CGAGGGCAAGCGGCGGCAGGGGCAAGGGGAAAGAGAGCAG back to top
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